genome.fa.s14.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  132  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38727258--38727347	30	3.2	28	81	9	110	31	21	23	24	1.98
38727704--38728011	27	11.4	26	81	6	267	18	16	18	46	1.85
38727704--38728011	54	5.7	55	82	9	332	18	16	18	46	1.85
38727736--38728011	81	3.4	81	84	6	353	19	17	18	45	1.85
38733963--38734028	26	2.5	27	80	2	80	28	34	18	18	1.94
38749477--38749654	27	6.6	27	84	3	205	29	28	15	26	1.96
38749498--38749653	82	1.9	81	88	3	233	29	28	15	26	1.96
38751501--38751611	51	2.2	51	82	6	136	30	29	17	22	1.96
38754551--38754628	29	2.7	29	84	11	106	26	30	15	26	1.96
38756437--38756604	83	2.0	83	100	0	336	28	23	14	32	1.95
38759024--38759156	69	1.9	70	89	1	205	32	13	17	36	1.89
38760544--38760994	47	9.6	47	90	1	697	33	8	29	29	1.86
38762407--38762718	40	7.8	40	93	0	489	23	21	28	26	1.99
38765315--38765447	69	1.9	70	89	1	205	33	13	16	36	1.88
38766834--38767285	47	9.6	47	92	0	733	33	8	28	29	1.86
38777582--38777633	26	2.0	26	85	7	70	36	17	5	40	1.73
38777815--38777888	25	3.0	25	91	0	112	32	10	28	28	1.91
38780304--38780340	18	2.1	18	100	0	74	27	35	0	37	1.57
38780304--38780335	10	3.4	10	83	16	50	31	31	0	37	1.58
38785988--38786018	8	3.8	8	95	4	53	64	0	0	35	0.94
38786081--38786115	17	2.1	17	88	0	52	22	37	2	37	1.69
38787600--38787682	31	2.7	31	90	0	112	36	12	27	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38788991--38789020	6	4.8	6	95	4	51	16	30	0	53	1.44
38793537--38793635	40	2.5	40	83	3	119	40	17	26	16	1.90
38794584--38794616	16	2.0	17	88	5	50	30	0	6	63	1.18
38805783--38805871	26	3.4	25	84	1	88	30	26	8	33	1.87
38805803--38805871	26	2.7	26	90	0	102	33	28	8	28	1.87
38808814--38808871	29	2.0	29	96	0	107	24	18	20	36	1.95
38809537--38809566	15	1.9	16	93	6	53	43	3	0	53	1.17
38809754--38809793	20	2.0	21	85	5	55	57	5	2	35	1.34
38811691--38811723	15	2.1	16	88	5	50	66	3	0	30	1.06
38812122--38812193	31	2.4	30	81	9	83	41	5	8	44	1.58
38812335--38812393	29	2.0	30	83	3	75	50	15	3	30	1.60
38814288--38814637	142	2.5	140	83	3	427	50	11	15	22	1.76
38823724--38823768	19	2.4	19	96	0	81	20	20	42	17	1.90
38831828--38832039	40	5.3	40	82	5	268	24	20	27	27	1.99
38831832--38832039	80	2.6	80	90	0	319	24	21	27	26	1.99
38839894--38840105	40	5.3	40	83	5	277	23	20	28	27	1.99
38839898--38840105	80	2.6	80	92	0	337	23	21	28	26	1.99
38856486--38856547	14	4.4	14	78	15	56	1	9	11	77	1.06
38857848--38857986	72	1.9	71	81	9	167	27	30	0	41	1.61
38859002--38859060	21	2.8	21	78	0	64	11	30	32	25	1.92
38869036--38869564	265	2.0	266	97	0	997	21	15	18	44	1.86
38870513--38870610	52	1.9	49	87	6	142	38	15	11	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38872236--38872314	37	2.1	37	86	4	106	25	27	18	27	1.98
38872433--38872877	47	9.4	47	93	1	737	29	30	8	32	1.87
38872433--38872877	190	2.4	188	94	0	764	29	30	8	32	1.87
38881090--38881166	13	5.9	13	75	6	66	28	5	25	40	1.77
38881090--38881161	26	2.8	26	77	8	83	25	5	27	41	1.77
38883207--38883379	71	2.4	72	81	8	201	54	13	5	26	1.62
38883239--38883372	71	1.9	71	88	1	205	55	14	5	24	1.59
38883801--38883866	18	3.7	18	91	0	114	37	15	13	33	1.86
38885174--38885245	20	3.2	23	69	13	69	12	25	2	59	1.46
38885174--38885360	44	4.2	44	93	2	306	11	27	3	58	1.48
38885214--38885333	24	5.3	24	63	15	85	10	25	4	60	1.47
38886666--38886704	19	2.1	19	90	0	60	51	20	25	2	1.60
38886781--38886822	19	2.2	19	95	0	75	47	19	28	4	1.69
38887108--38887147	21	2.0	20	90	5	62	20	2	5	72	1.15
38887115--38887172	30	2.0	30	86	3	82	15	1	6	75	1.09
38887172--38887224	15	3.5	15	76	20	56	37	1	1	58	1.20
38888720--38888810	46	2.0	45	85	6	121	34	5	4	56	1.43
38889573--38889632	29	2.1	28	90	3	93	58	10	0	31	1.31
38891348--38891417	23	3.0	23	73	10	70	77	2	18	1	0.97
38891351--38891417	35	1.9	35	81	6	82	76	2	19	1	1.00
38891926--38891963	18	2.1	18	90	0	58	63	5	5	26	1.37
38896052--38896077	13	2.0	13	100	0	52	38	23	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38897173--38897251	35	2.2	36	85	10	110	74	10	7	7	1.21
38897199--38897289	30	3.1	29	84	4	119	71	8	7	12	1.31
38899396--38899740	87	4.0	87	84	3	448	29	20	23	25	1.99
38899409--38899740	169	2.0	169	87	0	484	28	21	24	25	1.99
38900138--38900301	50	3.3	50	73	3	159	35	21	18	24	1.95
38900860--38900908	23	2.1	23	81	7	55	75	4	18	2	1.06
38908534--38908665	50	2.6	50	81	0	147	28	22	27	21	1.99
38911277--38911315	19	1.9	19	90	10	60	56	0	0	43	0.99
38912925--38912983	26	2.3	26	84	0	73	44	13	13	28	1.82
38912943--38913000	26	2.2	26	87	0	80	44	13	12	29	1.80
38917082--38917110	14	2.1	14	100	0	58	20	6	27	44	1.77
38918911--38918990	40	2.0	40	90	0	124	31	26	5	37	1.78
38921953--38922061	37	3.0	37	82	4	123	41	24	15	18	1.89
38931247--38931306	19	3.2	19	81	11	70	55	6	0	38	1.27
38931280--38931329	26	1.9	26	87	0	73	48	4	0	48	1.20
38932828--38932870	9	4.8	9	94	0	59	23	37	0	39	1.55
38933088--38933115	9	3.1	9	100	0	56	42	0	0	57	0.99
38948774--38948816	7	6.4	7	92	7	72	13	13	0	72	1.13
38948774--38948816	13	3.2	13	93	6	77	13	13	0	72	1.13
38948801--38948918	57	2.1	58	83	1	148	29	18	4	47	1.68
38951712--38951829	57	2.1	58	87	7	170	26	18	6	48	1.73
38960248--38960425	27	6.6	27	83	3	196	29	28	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38960269--38960424	82	1.9	81	86	3	224	28	28	15	27	1.96
38965840--38965877	16	2.4	16	100	0	76	47	18	0	34	1.49
38977304--38977338	17	2.2	16	90	10	54	54	8	14	22	1.67
38981872--38981903	16	2.0	16	100	0	64	50	25	0	25	1.50
38983406--38983471	13	5.1	13	80	7	80	36	22	7	33	1.83
38987909--38987933	6	4.2	6	100	0	50	20	0	0	80	0.72
38988331--38988370	21	1.9	21	84	0	53	67	0	2	30	1.04
38988622--38988651	15	2.0	15	93	0	51	73	10	0	16	1.09
38989125--38989191	6	11.2	6	100	0	134	16	0	0	83	0.64
38989417--38989504	25	3.4	27	78	12	94	37	0	1	61	1.04
38989417--38989503	28	3.4	25	79	14	88	36	0	1	62	1.03
38989867--38989908	22	2.0	21	86	13	59	57	2	2	38	1.25
38989970--38990002	17	1.9	17	88	11	50	48	3	6	42	1.43
38990497--38990525	15	2.0	15	93	6	51	48	0	0	51	1.00
38996398--38996471	31	2.4	31	79	0	85	40	8	10	40	1.70
39000586--39000615	15	2.0	15	100	0	60	26	13	13	46	1.80
39002219--39002413	42	4.6	42	81	9	202	31	25	14	27	1.95
39009140--39009327	42	4.5	42	79	7	186	31	25	14	28	1.95
39017192--39017219	14	2.0	14	100	0	56	28	21	28	21	1.99
39018920--39018949	14	2.1	14	100	0	60	13	13	36	36	1.84
39022687--39022712	4	6.5	4	100	0	52	23	0	0	76	0.78
39023384--39023479	40	2.4	39	87	1	138	33	14	23	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39023700--39023754	25	2.2	26	78	9	62	61	7	9	21	1.50
39024013--39024047	8	4.5	8	89	7	54	14	0	48	37	1.44
39024031--39024076	22	2.1	22	87	0	65	26	0	32	41	1.56
39024106--39024164	24	2.5	24	83	5	77	38	1	0	59	1.08
39024340--39024380	21	2.0	21	85	4	57	19	0	36	43	1.51
39024672--39024698	9	3.0	9	100	0	54	33	0	11	55	1.35
39026338--39026368	10	3.1	10	95	0	53	16	19	12	51	1.76
39028285--39028557	43	6.3	43	90	0	357	19	16	32	31	1.94
39031428--39031543	61	1.9	59	87	3	169	52	4	3	39	1.38
39042629--39043019	31	12.8	31	76	7	307	44	16	7	31	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213