genome.fa.s14.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  177  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53479937--53480179	45	5.5	44	79	3	186	27	23	20	27	1.99
53479923--53480175	44	5.8	44	78	5	181	27	25	18	28	1.98
53480191--53481070	46	18.3	46	76	10	758	29	23	17	28	1.97
53480204--53481097	97	9.2	98	81	6	754	29	24	17	28	1.97
53480204--53481080	194	4.5	193	80	7	892	29	24	17	28	1.97
53482326--53482361	14	2.5	15	86	9	56	13	8	0	77	0.98
53482348--53482447	50	2.0	50	88	0	146	15	23	18	44	1.86
53488642--53488676	13	2.5	14	90	9	54	62	5	0	31	1.18
53495604--53495657	18	3.0	19	76	13	51	27	5	1	64	1.26
53495632--53495674	24	1.9	24	86	13	65	23	6	2	67	1.27
53511231--53511381	28	5.4	28	88	1	205	25	12	27	33	1.92
53513425--53513480	29	1.9	29	88	0	85	28	25	5	41	1.77
53521288--53521465	27	6.6	27	85	3	205	29	28	14	27	1.95
53521309--53521464	82	1.9	81	88	3	233	29	28	14	27	1.95
53529317--53529494	27	6.6	27	85	3	205	29	28	14	27	1.95
53529338--53529493	82	1.9	81	88	3	233	29	28	14	27	1.95
53535831--53535878	25	1.9	25	100	0	96	37	12	6	43	1.68
53541645--53541690	17	2.6	17	83	13	58	67	0	2	30	1.03
53541654--53541689	16	2.1	18	90	10	58	69	0	0	30	0.89
53542098--53542172	39	1.9	39	94	0	132	32	5	20	42	1.74
53547774--53548252	69	6.9	69	77	3	381	18	23	22	35	1.96
53547826--53548253	138	3.1	138	80	2	450	19	24	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53547826--53548252	207	2.1	207	81	2	491	19	24	21	35	1.96
53552610--53552670	25	2.4	25	83	5	77	34	14	26	24	1.94
53560154--53560245	25	3.7	25	80	8	91	31	16	25	27	1.96
53565418--53565747	111	3.0	111	97	0	617	33	18	7	40	1.79
53567839--53567904	33	2.0	33	100	0	132	45	9	9	36	1.68
53567944--53567987	21	2.1	21	100	0	88	59	9	9	22	1.56
53570431--53570659	84	2.7	82	87	4	323	31	13	12	43	1.81
53570814--53570841	14	2.0	14	100	0	56	50	0	0	50	1.00
53571338--53571419	21	4.0	20	78	7	74	43	35	1	19	1.59
53571338--53571419	7	11.7	7	69	10	51	43	35	1	19	1.59
53572249--53572592	41	8.5	42	78	10	299	33	29	17	19	1.95
53572250--53572592	123	2.8	123	77	12	348	33	29	17	19	1.95
53581694--53581750	26	2.2	26	90	0	87	33	5	17	43	1.71
53581706--53581757	26	2.0	26	100	0	104	30	3	19	46	1.68
53591197--53591228	14	2.1	16	88	11	50	25	3	12	59	1.48
53594560--53594592	3	11.0	3	100	0	66	0	33	0	66	0.92
53599240--53599284	21	2.1	21	100	0	90	60	8	13	17	1.58
53599271--53599295	11	2.3	11	100	0	50	60	0	16	24	1.36
53602124--53602153	10	3.1	10	95	4	53	13	46	10	30	1.75
53609559--53609592	17	2.1	16	88	5	50	76	14	0	8	1.01
53618952--53618989	5	7.6	5	100	0	76	78	0	0	21	0.74
53620300--53620356	10	5.2	11	74	21	57	21	35	0	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53620317--53620372	22	2.5	22	94	2	94	28	30	0	41	1.57
53620344--53620459	51	2.3	51	95	0	205	28	25	0	46	1.53
53621588--53621612	7	3.6	7	100	0	50	28	0	12	60	1.32
53625947--53625991	22	2.0	22	95	0	81	51	20	13	15	1.76
53626357--53626496	41	3.4	41	82	5	167	37	28	16	17	1.91
53626749--53626873	46	2.8	45	80	4	153	25	20	20	33	1.97
53626843--53626958	45	2.6	45	73	2	108	17	17	18	46	1.84
53636438--53636593	45	3.5	45	83	1	143	23	22	13	40	1.89
53641096--53641134	12	3.2	12	85	0	51	20	23	5	51	1.67
53641383--53641630	50	4.8	50	83	3	262	22	28	20	28	1.99
53645598--53645839	41	5.9	41	79	8	260	21	27	15	35	1.94
53654586--53654709	54	2.3	54	78	2	133	19	26	29	25	1.98
53657299--53657338	18	2.2	18	90	0	62	82	7	2	7	0.92
53658638--53658815	88	2.0	88	82	2	214	24	25	24	25	2.00
53658862--53659122	44	5.9	44	85	0	342	22	26	19	31	1.98
53658817--53659122	88	3.5	87	79	4	317	23	26	18	31	1.98
53658873--53659119	132	1.9	132	90	0	395	23	25	19	31	1.98
53670266--53670546	33	8.7	31	68	25	142	20	18	27	33	1.96
53670364--53670415	26	2.0	26	96	0	95	19	17	30	32	1.95
53670254--53670590	100	3.3	100	89	2	496	21	17	27	32	1.96
53670463--53670546	27	2.8	29	82	12	100	20	21	28	29	1.98
53682120--53682200	27	2.7	30	80	14	89	16	20	29	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53682108--53682437	96	3.4	98	87	5	456	21	18	27	32	1.97
53689639--53689720	27	2.7	31	80	10	91	14	20	31	32	1.93
53689741--53689790	26	1.9	26	95	0	91	16	22	32	30	1.95
53689769--53689977	33	5.8	34	68	20	129	21	19	25	34	1.96
53689627--53689864	101	2.4	101	92	1	388	21	18	27	32	1.97
53689765--53689974	74	2.8	74	90	1	321	21	19	25	33	1.96
53697496--53697537	2	21.0	2	100	0	84	50	0	50	0	1.00
53699700--53701292	792	2.0	791	96	0	2875	34	29	13	22	1.92
53703757--53703800	22	2.0	22	86	0	61	43	22	4	29	1.73
53707308--53707337	14	2.2	14	94	5	53	70	6	13	10	1.34
53708898--53709166	132	2.0	132	98	0	520	30	18	15	36	1.92
53710127--53710192	27	2.4	27	84	0	105	24	33	34	7	1.84
53710241--53710292	3	17.7	3	77	18	56	69	0	30	0	0.89
53715371--53715438	11	6.2	11	80	11	68	22	35	1	41	1.63
53715443--53715499	31	1.9	29	82	10	71	40	0	1	57	1.09
53716612--53716637	7	3.7	7	100	0	52	26	0	15	57	1.38
53716633--53716664	7	4.6	7	92	0	55	25	0	18	56	1.42
53716612--53716658	14	3.4	14	88	11	62	25	0	17	57	1.40
53717174--53717247	30	2.5	30	77	0	76	33	45	12	8	1.71
53717297--53717335	18	2.2	18	85	0	51	23	23	10	43	1.84
53718873--53719283	126	3.3	126	90	1	646	28	22	17	31	1.96
53719322--53719594	96	2.9	95	80	6	329	41	15	2	39	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53725078--53725143	27	2.4	28	85	5	82	34	0	0	65	0.93
53728685--53728718	4	8.0	4	87	12	50	50	0	0	50	1.00
53728685--53728718	17	2.0	17	88	11	52	50	0	0	50	1.00
53736910--53737067	44	3.4	44	82	11	199	31	13	24	29	1.94
53736959--53737071	51	2.2	51	93	0	190	34	13	23	29	1.92
53738205--53738231	14	1.9	14	100	0	54	29	18	29	22	1.97
53745479--53745566	42	2.1	42	82	14	103	59	7	2	30	1.39
53745874--53745907	16	2.1	16	88	0	50	73	2	5	17	1.16
53749651--53749693	20	2.2	20	86	0	59	46	25	16	11	1.80
53749959--53750077	48	2.4	48	86	9	150	41	2	3	52	1.31
53749970--53750041	17	4.4	17	73	16	62	43	1	1	54	1.17
53757242--53757326	24	3.6	24	71	25	90	37	10	8	43	1.69
53757164--53757473	159	1.9	160	85	3	419	38	9	15	36	1.80
53761688--53761721	16	2.2	16	89	5	52	55	11	5	26	1.58
53766339--53766533	85	2.3	84	86	3	257	24	18	24	33	1.97
53766334--53766532	43	4.7	43	76	10	178	25	18	24	32	1.97
53768912--53768957	23	2.0	22	83	4	56	41	13	2	43	1.55
53780853--53780923	33	2.2	33	81	0	88	42	15	25	16	1.88
53780873--53780946	33	2.2	33	85	4	96	41	14	27	16	1.87
53782484--53782572	29	3.0	29	81	3	79	35	25	12	25	1.91
53782525--53782595	29	2.4	29	86	9	92	30	23	15	29	1.95
53790565--53790677	25	4.5	25	82	6	113	33	20	22	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53796166--53796191	12	2.2	12	100	0	52	34	7	0	57	1.27
53797114--53797199	29	2.9	29	77	8	77	32	3	1	62	1.19
53800203--53800250	3	16.0	3	100	0	96	66	0	0	33	0.92
53804572--53804609	18	2.1	18	100	0	76	34	10	34	21	1.87
53815487--53815608	24	5.0	25	73	16	103	19	22	21	36	1.95
53815485--53815599	50	2.3	48	82	11	151	19	23	20	36	1.95
53815472--53815609	25	5.6	24	72	15	97	18	22	21	36	1.95
53815577--53815623	24	1.9	25	83	12	62	17	23	21	38	1.93
53815494--53815623	49	2.6	49	82	8	113	18	23	21	36	1.95
53819521--53819659	50	2.8	49	84	3	179	22	18	29	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213