genome.fa.s14.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  27  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7224939--7225002	30	2.2	30	86	8	87	56	10	4	28	1.54
7226155--7226188	16	2.1	16	88	0	50	50	0	2	47	1.16
7226319--7226365	23	2.0	24	83	4	60	57	0	0	42	0.98
7243934--7243968	6	5.8	6	100	0	70	0	51	14	34	1.42
7243937--7243980	18	2.4	18	88	0	61	2	52	11	34	1.50
7247695--7247743	15	3.2	15	77	11	55	65	0	6	28	1.16
7248144--7248227	3	27.3	3	71	13	55	61	3	4	29	1.33
7249075--7249113	20	2.0	20	89	0	60	12	15	48	23	1.79
7267826--7268192	46	7.6	49	85	10	449	34	13	22	29	1.92
7267826--7268181	98	3.6	98	94	0	595	34	13	21	29	1.92
7268156--7268301	37	4.0	37	91	1	233	36	16	22	24	1.94
7273514--7273736	83	2.7	83	87	5	326	29	13	16	41	1.86
7273884--7273911	14	2.0	14	100	0	56	50	0	0	50	1.00
7274416--7274453	14	2.7	15	88	12	62	42	31	0	26	1.56
7274745--7274792	22	2.2	21	81	3	60	47	29	0	22	1.51
7275025--7275482	41	11.2	41	80	2	447	29	26	20	22	1.98
7275840--7275908	14	5.0	14	72	10	52	49	2	0	47	1.16
7275903--7275949	23	2.1	22	88	4	67	46	0	2	51	1.13
7275898--7275965	11	6.7	10	76	15	68	42	0	1	55	1.08
7280963--7281005	19	2.3	21	74	25	51	67	0	4	27	1.10
7282792--7282834	3	14.3	3	100	0	86	34	0	0	65	0.93
7305909--7305940	15	2.1	15	94	0	55	62	3	0	34	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7307403--7307443	20	2.0	20	90	0	64	17	58	9	14	1.62
7308473--7308537	28	2.7	23	75	17	60	36	10	3	49	1.53
7308721--7308784	27	2.4	25	78	14	67	35	9	3	51	1.50
7321016--7321487	44	10.8	45	71	15	210	31	21	21	25	1.98
7321229--7321568	44	7.8	43	74	9	278	31	21	22	24	1.98
7321143--7321433	131	2.2	130	79	7	304	30	22	21	25	1.99
7321235--7321570	87	3.9	87	94	0	548	31	21	22	24	1.98
7321229--7321477	131	1.9	131	81	6	299	30	22	22	24	1.99
7324495--7324589	45	2.1	45	88	1	138	32	27	5	34	1.79
7324570--7324621	16	3.2	16	91	0	77	34	34	0	30	1.58
7341205--7341253	21	2.3	21	82	3	53	28	2	2	67	1.13
7345879--7345907	5	6.0	5	92	8	51	79	0	0	20	0.74
7345835--7345926	47	2.0	46	80	8	105	67	5	4	22	1.30
7346316--7346380	26	2.6	25	73	22	64	49	3	10	36	1.53
7347414--7347454	20	2.0	20	90	0	64	14	9	58	17	1.62
7348084--7348291	74	2.8	74	98	0	398	22	24	20	32	1.98
7348217--7348357	44	3.2	43	78	4	149	25	22	21	30	1.99
7348324--7348570	46	5.7	45	69	19	141	27	20	20	31	1.97
7360610--7360682	9	7.9	9	68	17	51	71	4	2	21	1.16
7360610--7360701	46	2.0	45	81	8	105	66	5	4	23	1.31
7360918--7360971	25	2.2	25	80	12	58	46	1	11	40	1.50
7361184--7361245	3	21.0	3	72	21	51	62	1	4	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7362173--7362213	20	2.0	20	90	0	64	14	9	58	17	1.62
7363645--7363675	15	2.1	15	93	0	53	35	0	3	61	1.12
7365564--7365633	1	70.0	1	100	0	140	100	0	0	0	0.00
7382935--7382998	33	2.0	33	88	11	98	29	18	6	45	1.74
7383974--7384041	17	3.8	18	76	13	61	41	16	0	42	1.48
7383985--7384035	17	3.1	16	88	5	66	43	13	0	43	1.44
7384094--7384218	1	125.0	1	100	0	250	100	0	0	0	0.00
7384942--7385069	28	4.6	27	88	2	157	30	25	11	32	1.92
7384942--7385069	56	2.3	56	88	0	193	30	25	11	32	1.92
7391321--7391943	23	26.7	23	69	15	268	42	18	12	26	1.86
7391313--7391974	93	7.1	93	91	1	1083	42	17	12	26	1.86
7391321--7391974	187	3.5	187	95	0	1141	42	18	12	26	1.86
7392712--7392838	28	4.5	28	89	0	182	30	26	11	30	1.92
7393443--7393510	9	7.4	9	83	9	84	39	26	10	23	1.87
7393652--7393681	13	2.3	13	94	0	51	20	0	40	40	1.52
7396226--7396728	230	2.2	231	81	7	580	30	19	21	28	1.97
7396353--7396711	115	3.1	115	88	0	547	30	18	21	29	1.97
7398304--7398394	45	2.0	45	91	0	146	23	31	8	36	1.85
7398991--7399049	23	2.6	23	100	0	118	47	11	13	27	1.78
7400066--7400151	27	3.1	28	66	12	77	37	2	4	55	1.33
7400045--7400151	56	1.9	57	96	1	198	35	3	3	57	1.35
7400221--7400301	9	9.0	9	73	10	67	40	18	1	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7400305--7400348	19	2.3	19	84	0	52	43	0	2	54	1.12
7400319--7400356	19	2.0	19	94	0	67	44	0	0	55	0.99
7400361--7400561	22	9.3	22	66	22	65	47	19	1	30	1.61
7400378--7400487	31	3.4	32	79	10	109	45	20	2	31	1.65
7400478--7400554	24	3.6	21	73	14	68	51	19	1	27	1.54
7400492--7400653	12	13.8	12	68	13	79	51	19	1	28	1.54
7400485--7400553	24	3.0	24	87	8	92	53	17	1	27	1.52
7400638--7400688	19	2.7	19	88	11	86	50	17	0	31	1.46
7400638--7400756	9	13.4	9	72	16	63	47	20	3	29	1.66
7400669--7400705	16	2.3	16	90	0	56	51	16	8	24	1.71
7406222--7406269	21	2.3	21	92	0	78	35	22	41	0	1.54
7406233--7406281	12	4.3	12	72	15	50	36	20	40	2	1.64
7406689--7406780	42	2.2	42	84	5	114	28	20	22	28	1.99
7406689--7406891	43	4.8	42	84	6	148	27	22	21	29	1.99
7406702--7407013	42	7.4	41	84	6	317	26	21	20	31	1.98
7411395--7411429	18	1.9	18	88	0	52	54	20	0	25	1.45
7411548--7411590	3	14.3	3	85	0	59	32	30	0	37	1.58
7416237--7416406	43	4.0	42	77	11	168	22	18	27	31	1.97
7425926--7425954	12	2.4	12	100	0	58	34	6	13	44	1.71
7434015--7434040	6	4.3	6	100	0	52	19	34	15	30	1.93
7439926--7440276	126	2.8	123	90	3	560	28	15	22	33	1.95
7443307--7443639	115	2.9	116	96	0	623	43	8	9	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443665--7443768	29	3.7	29	81	17	130	28	0	25	46	1.53
7443667--7443964	51	5.8	52	82	10	366	27	0	25	46	1.56
7443636--7443964	103	3.2	102	84	9	422	28	0	24	46	1.57
7443695--7443956	74	3.5	74	84	6	382	28	0	25	45	1.56
7443744--7443789	22	2.2	20	88	11	67	26	0	28	45	1.54
7443773--7443922	23	5.6	29	73	25	118	30	0	22	47	1.56
7443697--7443906	23	8.4	23	75	19	172	29	0	23	46	1.56
7445832--7445880	11	4.4	11	76	5	53	63	4	0	32	1.13
7447147--7447208	30	2.1	30	93	0	106	25	3	12	58	1.50
7455797--7455829	8	4.2	8	84	7	50	57	0	0	42	0.98
7455798--7455828	15	2.1	15	93	0	53	61	0	0	38	0.96
7456070--7456137	15	4.9	15	70	21	51	39	1	0	58	1.07
7456070--7456127	7	8.4	7	76	14	50	39	1	0	58	1.08
7456100--7456137	19	2.1	18	90	5	58	36	0	0	63	0.95
7459234--7459280	18	2.6	18	77	12	51	42	4	4	48	1.42
7466111--7466195	30	2.9	28	73	11	73	38	3	7	50	1.47
7475728--7475791	14	4.7	14	76	5	60	23	21	21	32	1.98
7475797--7475906	23	4.7	23	65	10	69	39	16	18	26	1.91
7475889--7476009	45	2.7	44	73	14	113	33	12	23	31	1.91
7476053--7476123	29	2.5	28	79	4	81	23	16	26	32	1.96
7476150--7476181	15	2.1	15	100	0	64	25	18	31	25	1.98
7477820--7477871	27	1.9	27	92	0	86	30	21	32	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7478444--7478539	19	5.2	19	79	5	115	36	13	1	48	1.49
7478444--7478539	37	2.6	37	96	0	174	36	13	1	48	1.49
7478725--7478789	29	2.3	27	77	12	76	49	0	4	46	1.22
7478767--7478830	19	3.4	19	78	4	85	51	1	10	35	1.47
7479141--7479217	27	2.9	27	90	3	111	16	29	23	29	1.96
7479272--7479336	27	2.4	28	89	7	98	52	0	6	41	1.26
7480930--7480954	13	1.9	13	100	0	50	44	8	0	48	1.32
7486183--7486424	91	2.7	90	77	7	256	31	26	10	31	1.90
7492977--7493002	2	13.0	2	100	0	52	50	0	50	0	1.00
7495358--7495405	25	1.9	25	83	8	62	45	4	4	45	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213