genome.fa.s14.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  139  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41442471--41442743	136	2.0	136	87	2	397	34	16	25	23	1.95
41445331--41445366	18	1.9	19	88	5	56	25	11	16	47	1.79
41445654--41445728	37	2.0	37	100	0	150	29	8	16	46	1.75
41447750--41447927	27	6.6	27	77	6	137	30	28	15	25	1.96
41447750--41447927	54	3.3	54	78	7	164	30	28	15	25	1.96
41465379--41465564	40	4.7	40	85	5	216	26	27	21	24	1.99
41467719--41467757	15	2.6	15	87	0	51	28	5	2	64	1.28
41467732--41467760	15	1.9	15	100	0	58	34	3	0	62	1.12
41470686--41470738	28	1.9	28	85	11	74	32	18	3	45	1.68
41491016--41491117	41	2.5	41	87	3	134	27	19	26	26	1.99
41498610--41498711	41	2.5	41	85	3	134	29	19	24	26	1.98
41500727--41500868	63	2.3	59	81	9	160	47	16	11	24	1.80
41503096--41503188	45	2.1	45	87	0	132	31	21	20	26	1.98
41506038--41506119	42	2.0	42	85	4	112	30	24	14	30	1.95
41506252--41506304	25	2.1	25	100	0	106	32	20	0	47	1.51
41508923--41508954	16	2.0	16	93	0	55	25	15	0	59	1.36
41509084--41509172	45	2.0	45	90	0	142	33	23	16	25	1.96
41509183--41509367	51	3.6	51	80	6	216	30	26	17	25	1.97
41509181--41509365	101	1.8	101	86	8	268	30	25	17	25	1.97
41509177--41509399	101	2.2	101	78	10	240	30	27	15	26	1.96
41511313--41511460	39	3.9	37	81	9	138	45	10	8	35	1.69
41513099--41513140	19	2.2	19	86	0	57	16	19	2	61	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41524340--41524378	20	2.0	20	90	10	62	56	5	23	15	1.59
41527847--41528056	45	4.7	45	82	0	224	25	14	24	35	1.93
41533990--41534167	27	6.6	27	84	3	205	29	28	15	26	1.96
41534011--41534166	82	1.9	81	88	3	233	29	28	15	26	1.96
41542102--41542278	27	6.6	27	82	5	178	29	28	15	27	1.96
41542102--41542278	53	3.3	55	81	5	200	29	28	15	27	1.96
41559022--41559053	13	2.4	14	85	15	50	68	0	0	31	0.90
41559409--41559470	21	2.9	21	85	4	88	30	27	17	24	1.97
41559409--41559464	22	2.6	22	88	2	78	30	26	19	23	1.98
41562320--41562350	16	1.9	16	93	0	53	9	22	22	45	1.81
41568911--41568959	10	4.8	10	80	5	53	36	0	0	63	0.95
41571080--41571119	21	1.9	21	85	10	55	55	0	7	37	1.29
41598263--41598415	73	2.1	73	100	0	306	31	16	14	37	1.89
41601601--41601782	101	1.8	101	85	0	256	28	18	24	29	1.98
41601601--41601788	50	3.7	50	79	1	205	27	18	24	29	1.98
41609828--41610132	40	7.5	41	91	2	501	28	20	28	22	1.99
41609828--41610137	81	3.8	81	93	1	523	28	20	28	22	1.99
41609828--41610137	121	2.5	121	91	2	505	28	20	28	22	1.99
41617865--41618209	40	8.5	41	91	3	583	28	20	27	23	1.99
41617865--41618209	81	4.3	81	96	0	647	28	20	27	23	1.99
41617865--41618209	161	2.1	162	96	1	647	28	20	27	23	1.99
41625947--41626290	40	8.5	41	92	2	588	28	20	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41625947--41626858	81	11.2	81	75	12	714	29	17	25	27	1.97
41626513--41626858	40	8.5	41	90	2	556	28	20	27	23	1.99
41625862--41627007	568	2.0	568	98	0	2202	30	15	24	29	1.96
41628519--41628545	12	2.2	12	100	0	54	33	22	14	29	1.94
41632554--41632601	20	2.4	20	89	0	69	37	10	2	50	1.49
41635793--41635904	40	2.8	40	98	0	215	24	30	21	24	1.99
41639118--41639161	21	2.1	21	87	8	63	36	15	18	29	1.92
41641485--41641600	27	4.3	26	87	4	169	18	18	19	43	1.88
41641485--41641600	53	2.2	54	89	4	182	18	18	19	43	1.88
41647280--41647305	9	2.9	9	100	0	52	53	23	0	23	1.46
41650541--41650586	2	23.0	2	86	0	65	43	0	56	0	0.99
41650544--41650595	24	2.2	24	92	0	86	42	0	57	0	0.98
41650541--41650594	28	1.9	28	96	0	99	42	0	57	0	0.98
41655486--41655551	21	3.0	21	69	18	53	71	4	3	21	1.18
41661602--41661648	24	2.0	24	86	0	67	29	23	21	25	1.99
41671316--41671394	37	2.1	37	88	0	113	26	30	18	24	1.98
41671512--41671948	47	9.2	47	89	2	640	29	30	8	31	1.86
41671512--41671950	96	4.6	95	90	2	648	30	30	7	31	1.86
41671512--41671948	143	3.1	143	90	3	684	29	30	8	31	1.86
41686626--41686815	68	2.8	68	77	6	179	35	17	6	39	1.77
41698933--41699117	101	1.8	101	85	3	264	30	23	19	26	1.98
41702424--41702562	46	3.0	46	94	2	244	29	26	9	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41703301--41703345	17	2.6	17	89	0	63	60	15	0	24	1.36
41714829--41714872	18	2.4	18	88	3	61	34	18	20	27	1.96
41721552--41721583	15	2.1	15	94	0	55	68	9	6	15	1.36
41723707--41723867	42	4.0	39	76	12	146	29	13	21	35	1.91
41723726--41723863	42	3.4	41	80	9	147	30	13	21	35	1.91
41743570--41743613	18	2.4	18	88	3	61	34	18	20	27	1.96
41750329--41750360	15	2.1	15	94	0	55	68	9	6	15	1.36
41752442--41752522	40	2.0	40	83	9	103	27	12	23	37	1.90
41752470--41752626	41	3.9	41	84	4	192	28	13	21	36	1.91
41763016--41763321	42	7.4	42	83	3	354	28	20	19	31	1.97
41763075--41763345	84	3.2	84	89	0	400	29	16	20	33	1.95
41771177--41771504	42	7.9	42	80	3	324	29	19	18	32	1.96
41771231--41771507	84	3.3	84	88	1	378	31	17	18	32	1.94
41771270--41771504	126	1.9	126	89	1	364	31	17	18	32	1.94
41789849--41789953	49	2.1	49	92	0	174	16	24	7	51	1.70
41791392--41791438	23	2.1	23	84	7	62	51	12	4	31	1.59
41793337--41793461	50	2.5	50	84	0	169	20	28	23	27	1.99
41797228--41797305	32	2.5	32	81	8	88	26	14	30	28	1.95
41801985--41802108	65	1.9	65	95	3	223	24	9	18	47	1.78
41805864--41805916	26	2.0	26	88	0	79	24	35	20	18	1.95
41809587--41809686	50	2.0	50	100	0	200	50	12	0	38	1.40
41818535--41818586	26	2.0	26	84	0	68	15	36	19	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41821632--41822255	71	8.8	70	77	5	495	35	23	16	24	1.95
41821702--41822255	142	3.9	142	80	3	569	34	23	16	24	1.95
41821727--41822255	283	1.9	284	83	2	697	35	24	16	24	1.95
41823996--41824419	211	2.0	211	95	0	769	32	23	16	27	1.96
41826763--41826800	18	2.2	18	90	4	60	36	2	0	60	1.11
41826789--41826829	19	2.0	21	90	9	68	34	2	9	53	1.47
41832707--41832745	12	3.3	12	85	3	53	69	10	5	15	1.34
41832742--41832781	8	5.1	8	81	6	55	72	0	27	0	0.85
41832737--41832781	23	2.0	23	86	0	63	73	0	24	2	0.95
41835283--41835673	44	8.5	44	66	14	130	32	17	21	28	1.96
41835094--41835646	142	3.9	142	93	2	914	32	18	21	27	1.96
41835094--41835646	283	2.0	284	92	1	930	32	18	21	27	1.96
41835709--41835958	50	5.0	50	73	1	232	31	24	20	24	1.98
41835690--41835958	100	2.7	100	91	1	432	30	25	20	23	1.98
41836958--41836982	11	2.3	11	100	0	50	8	36	40	16	1.77
41839270--41839295	2	13.0	2	100	0	52	50	0	0	50	1.00
41839574--41839609	18	2.0	18	88	0	54	63	11	11	13	1.51
41840019--41840069	25	2.0	25	100	0	102	23	0	3	72	1.01
41844034--41844070	16	2.3	17	81	13	51	59	0	2	37	1.12
41844061--41844120	25	2.4	24	76	17	61	50	5	1	43	1.34
41845017--41845055	14	2.7	15	84	11	55	43	7	0	48	1.31
41845524--41845563	17	2.4	17	87	8	55	17	2	2	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41845732--41845779	9	5.4	9	80	11	55	29	0	4	66	1.10
41845718--41845772	27	2.0	29	85	7	78	27	0	5	67	1.12
41847926--41847960	18	1.9	18	88	0	52	42	28	2	25	1.69
41850327--41850367	21	2.0	21	100	0	82	26	4	24	43	1.74
41850585--41850635	20	2.5	20	81	6	59	11	35	23	29	1.90
41855842--41855879	8	4.6	8	90	3	58	28	57	0	13	1.36
41857978--41858026	25	2.0	25	83	0	62	59	6	0	34	1.22
41857980--41858057	32	2.4	34	80	6	90	57	5	2	34	1.34
41862529--41862670	69	2.1	69	94	0	248	33	18	16	32	1.93
41869738--41869798	24	2.5	24	81	5	70	37	32	11	18	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213