genome.fa.s14.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  200  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59843966--59843990	10	2.5	10	100	0	50	56	0	0	44	0.99
59844219--59844261	18	2.4	18	77	14	52	74	0	2	23	0.93
59846674--59846977	152	2.0	152	98	0	590	39	17	8	34	1.81
59850852--59850964	39	3.0	38	80	6	113	37	21	22	19	1.95
59859757--59859796	18	2.2	18	90	0	62	62	0	0	37	0.95
59863512--59863577	13	5.5	13	72	26	65	39	0	12	48	1.40
59863504--59863579	23	3.3	23	87	1	118	40	0	11	47	1.40
59866528--59866570	13	3.5	13	78	18	56	37	0	13	48	1.43
59866526--59866570	23	2.0	23	95	0	81	37	0	13	48	1.42
59872429--59872541	29	3.8	30	73	16	83	40	10	0	47	1.44
59873390--59873489	49	2.1	49	86	1	139	44	8	16	32	1.76
59874520--59874579	3	20.0	3	89	6	77	61	1	31	5	1.27
59884334--59884364	2	15.5	2	100	0	62	0	0	48	51	1.00
59884624--59884750	29	4.1	29	72	20	123	53	9	7	29	1.61
59886308--59886335	12	2.3	12	100	0	56	28	42	17	10	1.83
59887217--59887250	17	2.0	17	100	0	68	41	0	0	58	0.98
59887133--59887737	117	5.3	117	94	2	1009	41	1	4	51	1.32
59887334--59887367	17	2.0	17	100	0	68	41	0	0	58	0.98
59887334--59887381	15	3.0	15	81	9	51	41	2	0	56	1.11
59887451--59887484	17	2.0	17	100	0	68	41	0	0	58	0.98
59887451--59887498	15	3.0	15	81	9	51	41	2	0	56	1.11
59887568--59887601	17	2.0	17	100	0	68	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59887684--59887717	17	2.0	17	100	0	68	41	0	0	58	0.98
59887684--59887731	15	3.0	15	81	9	51	41	2	0	56	1.11
59887560--59887757	54	3.5	55	69	14	143	41	2	3	52	1.30
59887865--59887969	44	2.5	41	78	18	133	36	29	3	30	1.75
59887882--59887970	46	2.0	46	93	4	155	39	28	4	28	1.76
59887951--59888003	16	3.3	16	91	0	88	22	32	5	39	1.78
59891350--59891384	18	1.9	18	88	0	52	42	0	0	57	0.99
59891348--59891401	26	2.1	26	82	6	65	37	0	0	62	0.95
59904222--59904259	12	3.3	12	82	14	53	73	0	0	26	0.83
59906896--59906947	21	2.5	21	79	14	63	34	0	5	59	1.21
59909769--59909951	50	3.8	48	85	7	228	24	18	33	22	1.97
59913661--59913706	14	3.5	13	88	8	67	0	23	0	76	0.79
59917554--59917580	14	1.9	14	100	0	54	66	14	0	18	1.25
59922969--59923019	3	17.0	3	100	0	102	33	0	0	66	0.92
59923660--59923700	21	2.0	21	85	0	55	60	29	2	7	1.36
59924735--59924816	37	2.2	36	82	2	92	19	14	26	39	1.90
59940973--59941153	91	2.0	90	87	5	258	50	11	17	20	1.76
59950086--59950110	13	1.9	13	100	0	50	32	0	0	68	0.90
59958453--59958500	6	8.0	6	100	0	96	16	16	50	16	1.79
59959007--59959039	16	2.0	16	94	5	57	45	0	0	54	0.99
59960133--59960163	15	2.1	15	93	0	53	25	35	3	35	1.72
59962081--59962174	41	2.3	39	82	8	107	29	21	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59962098--59962189	40	2.3	41	84	5	116	31	23	25	19	1.98
59962231--59962471	41	5.9	41	88	2	360	17	23	28	30	1.97
59963212--59963252	21	2.0	21	85	0	55	24	2	46	26	1.65
59963538--59963572	15	2.4	14	86	9	52	22	0	37	40	1.55
59963555--59963633	21	3.7	21	73	10	70	21	1	40	36	1.62
59964179--59964208	15	2.0	15	100	0	60	60	0	0	40	0.97
59964301--59964507	105	2.0	104	86	5	292	50	11	11	27	1.72
59964301--59964539	105	2.3	105	83	9	283	48	12	12	27	1.76
59964590--59964638	26	1.9	25	91	4	80	69	2	0	28	1.00
59967329--59967813	23	21.3	23	73	13	315	29	5	23	40	1.78
59967331--59967776	137	3.3	137	93	1	761	30	5	23	40	1.78
59967377--59967730	68	5.2	67	73	13	337	29	5	23	41	1.77
59967429--59967808	114	3.3	114	80	10	370	30	5	22	40	1.78
59968440--59968669	43	5.3	43	92	2	363	21	18	33	27	1.96
59968420--59968669	129	1.9	129	91	0	410	20	17	33	29	1.95
59972839--59972887	18	2.7	18	79	14	55	30	4	0	65	1.11
59974960--59974989	3	10.0	3	100	0	60	66	0	0	33	0.92
59979718--59979939	99	2.2	99	87	1	320	31	16	25	27	1.97
59979718--59979975	99	2.6	99	81	3	261	30	19	24	25	1.98
59979805--59980260	143	3.2	143	87	1	648	30	20	22	26	1.98
59982079--59982109	15	2.1	15	93	0	53	29	6	0	64	1.18
59986716--59986750	17	2.1	17	100	0	70	37	28	11	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59987821--59987874	25	2.3	25	75	18	62	53	7	3	35	1.47
59990002--59990066	30	2.2	30	100	0	130	9	15	20	55	1.67
59995057--59995104	26	1.9	25	84	16	64	45	0	2	52	1.12
59994920--59995129	93	2.3	91	86	5	280	46	4	2	46	1.37
59995145--59995437	120	2.4	120	90	3	457	43	2	4	50	1.35
59995399--59995440	15	2.7	16	82	14	52	45	0	2	52	1.13
59995374--59995683	157	2.0	157	95	0	557	48	4	2	44	1.35
59995543--59995593	18	3.0	18	78	18	56	47	0	0	52	1.00
60005679--60005729	19	2.6	19	79	14	59	60	7	0	31	1.25
60005692--60005729	19	2.1	19	90	5	60	57	7	0	34	1.28
60005731--60005769	20	2.0	20	89	0	60	58	2	0	38	1.12
60011689--60011720	3	10.7	3	100	0	64	68	0	0	31	0.90
60022494--60022547	2	27.0	2	100	0	108	0	50	0	50	1.00
60023707--60023731	3	8.3	3	100	0	50	32	0	0	68	0.90
60028734--60028858	62	2.0	63	84	4	164	25	19	31	24	1.98
60030875--60031002	48	2.7	46	81	4	123	28	21	21	27	1.99
60032949--60032988	22	1.9	21	90	10	64	27	10	20	42	1.83
60033627--60033680	22	2.5	22	81	6	65	66	14	5	12	1.41
60035670--60035700	3	10.3	3	92	0	53	38	29	32	0	1.57
60038298--60038366	24	3.0	22	73	16	59	49	7	4	39	1.50
60050939--60050965	4	6.8	4	100	0	54	25	22	0	51	1.48
60065244--60065278	18	1.9	18	94	0	61	25	5	28	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60066850--60066879	15	2.0	15	93	0	51	43	0	23	33	1.54
60069755--60069929	51	3.5	49	78	5	188	24	16	27	32	1.96
60069752--60069934	101	1.8	102	87	3	280	24	15	27	32	1.96
60083671--60083701	15	2.1	15	93	0	53	54	6	0	38	1.26
60086720--60086814	39	2.4	40	76	13	99	30	4	2	63	1.25
60086920--60086979	29	2.0	30	87	3	86	56	13	10	20	1.65
60088083--60088125	18	2.2	20	88	8	63	0	25	6	67	1.15
60090482--60090578	39	2.5	40	81	5	99	44	21	16	17	1.87
60090613--60090726	41	2.8	41	85	9	169	17	22	33	26	1.96
60091989--60092038	22	2.3	22	82	10	66	18	0	32	50	1.47
60091925--60092040	7	16.1	7	70	8	54	19	0	33	45	1.57
60092430--60092471	22	2.0	22	85	4	59	30	42	0	26	1.55
60096288--60096396	45	2.6	43	80	10	127	33	5	29	31	1.80
60096503--60096668	22	8.0	21	68	20	91	54	2	1	41	1.24
60096603--60096643	13	3.2	12	80	12	55	58	0	0	41	0.98
60096631--60096666	18	2.0	18	100	0	72	66	0	0	33	0.92
60096698--60096741	21	2.1	21	83	8	54	56	9	0	34	1.31
60096558--60096864	120	2.6	120	93	2	519	52	4	1	41	1.33
60096753--60096787	18	2.0	17	94	5	61	57	0	0	42	0.99
60098348--60098377	13	2.3	13	94	0	51	30	13	6	50	1.67
60100170--60100392	43	5.2	43	84	3	261	23	17	31	28	1.96
60100138--60100368	86	2.7	84	81	2	273	26	17	30	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60100138--60100392	85	3.0	86	81	1	289	25	17	29	27	1.98
60101968--60102036	32	2.2	31	80	10	77	42	11	11	34	1.78
60105049--60105085	16	2.3	16	90	9	58	54	5	2	37	1.38
60109911--60109953	18	2.4	18	84	7	52	55	0	2	41	1.12
60112615--60113123	257	2.0	255	90	0	811	37	14	20	27	1.92
60116244--60116294	24	2.1	24	88	0	75	15	33	19	31	1.93
60120232--60120302	20	3.6	19	79	9	72	56	5	0	38	1.23
60121609--60121721	59	1.9	59	94	0	199	50	3	2	43	1.33
60122369--60122415	23	2.0	23	88	8	69	40	6	17	36	1.75
60132017--60132056	20	2.0	20	85	0	53	30	10	10	50	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213