genome.fa.s14.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  40  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10587157--10587379	114	2.0	114	80	7	256	26	24	22	26	2.00
10587308--10587384	41	1.9	40	86	2	109	29	24	16	28	1.97
10588744--10588860	41	2.9	41	77	12	107	31	28	20	19	1.97
10595925--10595954	11	2.7	11	100	0	60	36	0	0	63	0.95
10595919--10595969	22	2.4	21	71	12	50	43	0	0	56	0.99
10596076--10596135	30	2.0	30	90	0	93	56	13	0	30	1.37
10613159--10613184	12	2.2	12	100	0	52	26	23	7	42	1.81
10615575--10615637	25	2.5	25	89	0	90	30	22	26	20	1.98
10619042--10619066	7	3.6	7	100	0	50	88	0	0	12	0.53
10619510--10619556	23	2.0	23	91	0	76	44	10	6	38	1.65
10619801--10619856	29	1.9	29	92	0	94	35	0	8	55	1.31
10620972--10621029	29	2.0	29	86	6	82	34	3	10	51	1.53
10634211--10634262	26	2.0	25	88	3	77	34	3	23	38	1.73
10643299--10643331	15	2.2	15	94	0	57	24	0	12	63	1.28
10645198--10645292	30	3.3	29	82	5	104	62	5	1	31	1.24
10645220--10645292	10	7.7	9	75	15	67	63	4	1	31	1.22
10646519--10646559	18	2.1	20	82	13	50	39	2	7	51	1.43
10646688--10646730	22	2.0	22	86	9	61	30	6	4	58	1.45
10646688--10646729	21	2.0	22	85	4	59	30	7	4	57	1.47
10657726--10657758	7	4.7	7	100	0	66	30	0	0	69	0.88
10662111--10662139	2	14.5	2	100	0	58	51	0	48	0	1.00
10662280--10662314	2	18.0	2	94	5	63	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10674505--10674618	34	3.4	34	79	6	142	30	12	14	42	1.82
10674725--10674775	24	2.3	23	83	10	61	33	23	13	29	1.93
10676242--10676335	40	2.4	40	78	5	104	29	27	19	23	1.98
10676878--10676902	13	1.9	13	100	0	50	60	0	0	40	0.97
10676878--10676932	15	3.9	14	76	17	51	54	3	0	41	1.18
10683502--10683546	20	2.2	20	80	0	54	2	24	6	66	1.27
10683605--10683629	13	1.9	13	100	0	50	60	0	0	40	0.97
10686289--10686329	21	2.0	21	85	0	55	36	0	2	60	1.10
10704139--10704173	4	8.8	4	100	0	70	25	0	22	51	1.48
10713442--10713472	16	1.9	16	93	0	53	41	6	32	19	1.77
10713693--10713824	26	5.1	26	68	20	80	50	4	0	43	1.27
10718667--10718706	5	8.0	5	97	0	62	60	35	0	5	1.19
10727908--10728082	85	2.1	85	95	0	314	32	21	14	30	1.94
10734473--10734498	13	2.0	13	100	0	52	46	0	0	53	1.00
10736067--10736222	41	3.8	41	94	0	267	28	24	19	26	1.99
10742153--10742351	52	3.9	52	83	5	248	25	16	28	29	1.97
10750995--10751019	7	3.6	7	100	0	50	28	0	12	60	1.32
10753084--10753117	17	2.0	17	88	0	50	14	8	5	70	1.31
10754795--10754840	20	2.2	21	84	7	58	67	0	2	30	1.03
10771444--10771523	40	2.0	40	100	0	160	30	17	20	32	1.95
10798372--10798413	22	1.9	21	81	18	50	59	2	2	35	1.23
10813318--10813392	39	2.0	37	94	5	132	29	17	20	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10837788--10837817	14	2.1	14	93	0	51	10	30	10	50	1.69
10838334--10838384	24	2.1	24	82	7	59	68	5	5	19	1.31
10850692--10850722	16	1.9	16	100	0	62	0	25	16	58	1.38
10856858--10856906	23	2.1	23	85	7	64	36	8	6	48	1.58
10861510--10861607	9	10.3	9	66	14	54	61	2	2	34	1.19
10861595--10861633	18	2.1	19	85	4	53	64	0	5	30	1.15
10861932--10861989	30	1.9	30	86	6	82	34	3	1	60	1.24
10865336--10865484	67	2.2	67	84	3	194	42	12	4	40	1.64
10866787--10866849	30	2.1	30	96	0	117	58	14	1	25	1.45
10866878--10866937	11	5.5	11	79	0	57	68	0	10	21	1.19
10866975--10867063	43	2.1	43	97	0	169	22	14	13	49	1.78
10870131--10870166	19	1.9	18	94	5	63	72	0	27	0	0.85
10870526--10870947	153	2.7	154	80	12	508	52	7	9	30	1.60
10871182--10871423	50	4.7	50	76	4	200	27	20	26	25	1.99
10872741--10872792	20	2.8	18	78	21	63	51	3	1	42	1.31
10888284--10888319	19	1.9	18	94	5	63	72	0	27	0	0.85
10888679--10889753	155	7.0	153	81	7	1270	52	7	9	30	1.61
10889490--10889522	13	2.5	13	86	13	50	78	3	0	18	0.87
10888679--10889752	304	3.5	303	89	4	1629	52	7	9	30	1.61
10889644--10889679	8	4.2	8	92	7	54	69	0	2	27	1.02
10891817--10892191	124	3.0	124	97	0	698	40	14	11	33	1.82
10894633--10894661	12	2.4	12	100	0	58	48	10	0	41	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10894988--10895139	37	3.9	37	81	13	173	26	21	15	36	1.94
10895056--10895324	46	5.6	46	82	10	331	27	21	14	35	1.93
10895099--10895318	52	4.3	52	82	8	281	27	22	14	35	1.93
10895056--10895324	98	2.7	98	94	0	457	27	21	14	35	1.93
10898029--10898115	37	2.3	38	84	11	108	51	10	4	33	1.56
10898043--10898224	41	4.6	40	67	18	96	47	12	6	34	1.65
10906558--10906662	41	2.6	41	83	6	131	30	28	17	23	1.97
10907392--10907416	2	12.5	2	100	0	50	52	0	0	48	1.00
10908349--10908373	13	1.9	13	100	0	50	40	24	4	32	1.73
10910612--10910720	56	2.0	55	88	1	164	43	12	22	21	1.86
10911552--10911599	20	2.3	21	82	13	55	4	6	10	79	1.05
10911778--10911815	18	2.1	19	90	9	62	10	5	39	44	1.61
10911784--10911821	17	2.2	17	86	9	51	13	5	39	42	1.66
10912737--10912790	26	2.0	27	89	3	83	37	0	0	62	0.95
10921750--10921808	18	3.3	18	72	13	50	18	28	1	50	1.56
10925034--10925079	23	2.0	24	83	12	60	45	2	15	36	1.58
10925612--10925676	27	2.4	27	82	9	80	35	21	24	18	1.96
10925845--10926198	26	13.6	26	84	6	362	24	14	20	39	1.91
10925871--10926198	52	6.3	52	85	4	414	24	14	21	39	1.90
10925871--10926198	78	4.2	77	85	3	415	24	14	21	39	1.90
10928059--10928138	25	3.2	26	80	5	101	35	18	25	21	1.96
10928062--10928158	50	1.9	50	87	8	144	36	20	24	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10928083--10928156	25	2.9	25	76	6	78	39	20	21	18	1.93
10932798--10932831	11	2.9	12	82	8	52	26	23	0	50	1.50
10935732--10935774	19	2.2	20	83	8	52	30	23	2	44	1.66
10940344--10940386	19	2.2	20	83	8	52	30	23	2	44	1.66
10946174--10946207	18	1.9	18	88	5	52	23	14	0	61	1.33
10948513--10948591	36	2.2	36	88	4	115	17	12	27	41	1.86
10950838--10950876	19	2.2	19	86	9	55	38	15	5	41	1.69
10950885--10950990	25	4.3	25	71	8	83	32	19	25	22	1.98
10951195--10951238	22	2.0	22	81	0	52	9	13	27	50	1.72
10951325--10951484	43	3.7	43	84	0	196	22	29	18	29	1.98
10951306--10951484	86	2.1	86	82	3	209	21	29	19	29	1.98
10952189--10952217	12	2.4	12	100	0	58	41	0	10	48	1.37
10952200--10952243	21	2.1	21	87	8	63	36	0	15	47	1.46
10952216--10952240	12	2.1	12	100	0	50	32	0	16	52	1.44
10952352--10952392	19	2.2	19	86	8	57	56	0	4	39	1.21
10952365--10952417	19	2.8	19	82	0	52	58	0	1	39	1.09
10953261--10953337	38	2.0	38	100	0	154	38	10	12	37	1.78
10953938--10953988	16	3.2	16	77	0	57	27	13	45	13	1.82
10954447--10954591	41	3.5	41	87	2	184	25	19	24	31	1.98
10954696--10954746	26	2.0	26	84	0	66	58	5	11	23	1.55
10955004--10955036	14	2.3	15	94	5	59	30	0	33	36	1.58
10955132--10955315	87	2.1	90	87	4	266	28	1	28	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10955484--10955536	26	2.0	26	96	0	97	54	7	9	28	1.59
10957265--10957311	19	2.5	19	92	0	85	42	10	8	38	1.70
10957729--10957753	8	3.1	8	100	0	50	36	0	24	40	1.55
10960643--10960882	43	5.6	43	83	3	270	23	17	30	28	1.97
10961326--10961378	25	2.1	26	85	3	72	16	3	5	73	1.17
10961839--10961876	14	2.7	15	88	12	62	42	31	0	26	1.56
10962060--10962150	22	4.2	22	69	9	62	35	39	2	23	1.67
10962156--10962193	15	2.7	14	84	8	51	42	26	0	31	1.56
10962486--10962540	16	3.8	15	77	11	53	50	3	3	41	1.37
10962567--10962937	41	9.1	41	78	5	333	33	27	18	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213