genome.fa.s14.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  168  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50389807--50389856	26	1.9	26	95	0	91	22	26	24	28	1.99
50390430--50390464	19	1.9	19	88	11	56	17	11	5	65	1.43
50394235--50394318	19	4.1	21	82	8	68	42	14	5	36	1.70
50394235--50394292	22	2.6	22	81	7	64	41	17	5	36	1.72
50394248--50394343	19	4.8	19	84	5	102	39	13	7	39	1.72
50394869--50394984	44	2.6	44	86	0	160	30	25	16	27	1.97
50394936--50395303	132	2.8	132	88	0	549	29	22	19	27	1.98
50401456--50401498	19	2.3	18	84	15	52	62	0	0	37	0.95
50402128--50402192	22	3.1	21	77	12	62	43	15	6	35	1.72
50402128--50402185	22	2.6	22	81	7	64	41	17	5	36	1.72
50402164--50402284	19	6.6	19	81	9	153	39	11	9	39	1.73
50402180--50402212	14	2.4	14	100	0	66	42	9	6	42	1.61
50402164--50402284	52	2.2	52	85	10	154	39	11	9	39	1.73
50403362--50403404	21	2.1	20	82	4	50	48	0	2	48	1.14
50409890--50409935	24	1.9	24	82	8	58	32	17	8	41	1.80
50420255--50420391	68	2.0	68	88	2	204	21	33	21	23	1.97
50420627--50420675	21	2.4	20	83	10	55	65	10	0	24	1.23
50420997--50421022	7	3.7	7	100	0	52	88	11	0	0	0.52
50426168--50426227	27	2.3	25	82	5	66	31	10	21	36	1.87
50434075--50434207	49	2.6	51	79	9	148	20	21	21	36	1.95
50440803--50440895	45	2.1	44	88	6	134	37	25	4	32	1.76
50440877--50440916	16	2.5	17	88	12	66	30	30	5	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50444436--50444497	32	1.9	32	86	0	88	38	3	24	33	1.71
50445065--50445105	21	1.9	22	85	5	57	7	17	2	73	1.17
50445838--50445903	3	21.3	3	73	17	55	33	0	1	65	1.02
50445861--50445903	10	4.5	10	80	11	54	30	0	2	67	1.03
50445838--50445893	14	3.9	15	72	13	55	33	0	0	66	0.92
50445839--50445900	18	3.0	20	77	15	65	33	0	1	64	1.03
50449965--50450006	20	2.0	21	86	13	61	14	16	4	64	1.45
50450952--50450984	7	4.7	7	85	14	50	72	0	15	12	1.12
50452257--50453488	89	13.7	89	88	2	1716	31	18	23	26	1.98
50452257--50453488	181	6.9	181	93	0	1937	31	18	23	26	1.98
50454041--50454081	21	2.0	21	85	9	57	7	14	2	75	1.12
50454803--50454871	3	22.3	3	75	16	61	33	0	1	65	1.02
50454803--50454871	10	7.0	10	74	21	56	33	0	1	65	1.02
50454804--50454861	14	4.1	15	73	13	59	34	0	0	65	0.93
50467733--50467781	3	17.3	3	83	12	68	65	0	34	0	0.93
50467724--50467784	14	4.2	15	85	12	74	63	0	36	0	0.94
50467733--50467785	14	3.9	14	90	2	81	66	0	33	0	0.92
50467729--50467779	11	4.2	12	80	14	61	62	0	37	0	0.95
50467736--50467785	11	4.6	11	83	16	61	66	0	34	0	0.92
50467936--50468126	19	10.2	19	70	21	127	32	0	12	54	1.38
50468319--50468399	37	2.2	37	95	2	144	53	2	2	41	1.27
50470445--50470511	28	2.4	27	87	4	107	35	1	10	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50473461--50473512	20	2.6	19	85	11	61	3	26	1	67	1.18
50474029--50474693	216	3.0	215	82	10	804	40	13	19	26	1.89
50477346--50477373	13	2.2	13	100	0	56	53	14	7	25	1.66
50477452--50477529	29	2.5	31	82	12	81	55	10	11	23	1.66
50478404--50478565	82	2.0	82	97	0	306	43	15	16	24	1.87
50479196--50479287	20	4.6	20	74	5	87	30	19	34	15	1.93
50479195--50479287	40	2.3	39	85	7	116	30	19	34	16	1.93
50481242--50481283	22	2.0	22	95	4	77	35	19	28	16	1.93
50485257--50485348	46	2.0	46	91	0	148	28	25	18	28	1.98
50486314--50486343	13	2.3	13	94	0	51	70	10	0	20	1.16
50489402--50489456	23	2.5	23	94	5	96	63	3	21	10	1.42
50513445--50513514	25	2.8	25	88	0	104	22	21	21	34	1.97
50523310--50523887	293	2.0	293	88	2	867	30	21	15	32	1.94
50529174--50529319	41	3.6	41	91	1	213	19	30	20	29	1.97
50529174--50529342	82	2.1	82	82	2	205	21	28	19	30	1.98
50536654--50536799	41	3.6	41	91	1	213	19	30	20	29	1.97
50536654--50536827	82	2.1	82	82	2	215	21	28	20	29	1.98
50541566--50541616	23	2.2	23	92	0	84	41	21	9	27	1.84
50542097--50542125	8	3.6	8	100	0	58	24	0	0	75	0.80
50542863--50542909	22	2.2	21	81	11	51	51	2	2	44	1.25
50545544--50545597	25	2.2	25	89	0	81	9	20	24	46	1.79
50551908--50551964	27	2.1	27	81	9	64	28	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50551978--50552203	61	3.7	62	77	6	228	25	25	13	35	1.93
50554226--50554468	128	1.9	128	87	1	353	34	23	12	29	1.92
50563991--50564111	43	2.8	42	76	9	118	33	28	16	21	1.95
50567810--50567880	21	3.3	21	68	14	63	67	4	5	22	1.29
50567795--50567889	44	2.1	45	96	1	174	67	4	6	22	1.31
50567984--50568052	35	2.0	35	83	8	88	34	4	0	60	1.16
50568021--50568096	29	2.6	29	81	8	91	36	2	0	60	1.11
50568207--50568406	93	2.2	89	82	10	237	36	9	17	37	1.82
50580911--50581135	40	5.7	40	84	5	251	25	28	21	24	1.99
50580913--50581135	119	1.9	120	81	6	274	25	27	21	24	1.99
50588809--50589030	40	5.6	39	82	6	236	25	27	22	24	2.00
50588809--50589029	78	2.8	78	83	5	250	25	28	21	24	1.99
50588811--50589031	118	1.9	119	81	6	270	25	27	22	24	2.00
50604609--50604639	16	1.9	16	93	0	53	77	9	3	9	1.10
50605106--50605376	135	2.0	135	93	0	461	45	11	17	25	1.83
50623698--50623738	19	2.2	19	86	4	57	63	7	4	24	1.40
50630605--50630655	23	2.2	23	92	0	84	27	9	21	41	1.84
50638496--50638531	15	2.4	15	90	0	54	33	19	19	27	1.96
50638504--50638535	15	2.1	15	100	0	64	34	15	18	31	1.93
50638665--50639573	466	2.0	466	94	0	1611	28	20	10	40	1.86
50642475--50642652	27	6.6	27	83	3	196	29	28	15	26	1.96
50642496--50642651	82	1.9	81	86	3	224	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50650494--50650670	27	6.6	27	83	4	187	29	28	14	27	1.95
50650514--50650670	55	2.9	53	83	4	197	28	28	15	27	1.96
50650514--50650669	82	1.9	81	86	3	224	28	28	15	26	1.96
50658437--50658678	50	4.7	50	77	5	157	24	25	21	28	1.99
50664638--50664782	50	2.9	50	81	1	175	24	26	21	27	1.99
50664930--50664954	13	1.9	13	100	0	50	56	8	0	36	1.29
50668553--50668666	54	2.1	53	85	1	156	24	25	12	37	1.90
50675621--50675650	15	1.9	16	93	6	53	56	0	0	43	0.99
50675856--50675897	21	2.0	21	82	13	52	38	7	7	47	1.58
50680629--50680720	45	2.0	45	93	0	157	17	32	18	31	1.94
50680886--50681098	108	2.0	108	98	0	408	27	23	15	33	1.95
50688875--50688917	21	2.0	23	81	9	54	44	11	11	32	1.77
50692080--50692129	19	2.8	18	87	6	66	30	14	8	48	1.72
50692112--50692143	15	2.2	15	94	5	57	37	3	6	53	1.42
50692329--50692381	27	1.9	28	84	3	72	43	3	7	45	1.50
50692329--50692388	27	2.2	28	81	3	68	45	3	6	45	1.46
50695886--50695942	15	3.8	15	75	6	53	68	7	0	24	1.14
50709462--50709554	40	2.3	40	81	3	98	45	23	16	15	1.85
50711536--50711566	16	1.9	16	100	0	62	32	25	9	32	1.88
50716843--50716893	21	2.4	21	86	0	66	37	17	41	3	1.68
50716777--50716974	87	2.3	87	87	3	274	39	19	30	10	1.85
50716930--50716999	21	3.3	21	85	0	86	35	17	41	5	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50717313--50717649	43	7.8	44	85	5	372	25	21	28	24	1.99
50717313--50717649	86	3.9	86	84	2	435	25	21	28	24	1.99
50717316--50717649	129	2.6	129	86	2	431	24	21	28	25	1.99
50718610--50718642	17	1.9	17	88	11	50	39	9	3	48	1.50
50721511--50721543	14	2.3	15	89	5	50	78	0	21	0	0.75
50726360--50726454	50	1.9	49	80	6	111	28	27	13	30	1.94
50738232--50738876	47	13.6	47	92	1	1040	29	29	8	33	1.86
50738232--50738876	143	4.5	141	92	1	1031	29	29	8	33	1.86
50738232--50738876	190	3.4	190	94	1	1082	29	29	8	33	1.86
50738232--50738878	237	2.7	237	93	2	1070	29	29	8	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213