genome.fa.s14.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  166  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49764899--49764936	16	2.4	16	90	0	58	28	23	5	42	1.76
49768829--49768896	25	2.7	25	90	0	109	20	22	23	33	1.97
49769488--49769530	20	2.2	19	88	12	61	58	4	18	18	1.56
49770401--49770457	29	2.0	29	100	0	114	45	3	12	38	1.59
49770785--49770884	42	2.4	42	93	0	164	23	27	33	17	1.96
49782632--49782680	23	2.1	23	84	0	62	59	0	2	38	1.09
49791874--49791920	13	3.5	13	77	5	58	57	10	23	8	1.60
49791885--49791926	14	3.1	14	72	6	50	57	11	23	7	1.59
49791871--49791926	27	2.1	27	100	0	112	55	10	26	7	1.60
49794965--49795094	50	2.6	50	79	2	136	25	23	19	31	1.98
49796063--49796127	31	2.1	31	85	0	85	38	15	7	38	1.76
49808222--49808265	18	2.4	18	88	7	63	40	43	2	13	1.57
49808411--49808486	9	8.4	9	77	11	84	30	9	18	42	1.81
49808411--49808486	18	4.2	18	83	6	100	30	9	18	42	1.81
49808411--49808486	27	2.8	27	84	4	100	30	9	18	42	1.81
49808549--49808607	28	2.1	28	81	3	66	35	6	18	38	1.78
49816695--49816721	6	4.5	6	100	0	54	18	0	81	0	0.69
49819780--49819822	15	2.9	15	78	0	59	55	4	13	25	1.58
49824610--49824635	6	4.3	6	100	0	52	53	15	15	15	1.73
49826774--49826827	28	1.9	28	85	7	74	50	1	22	25	1.59
49827928--49828191	40	6.7	40	88	5	351	25	26	21	25	2.00
49829831--49829992	43	3.8	43	79	9	154	27	15	25	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49836757--49836923	43	4.0	42	77	9	157	26	15	27	30	1.96
49837728--49837768	21	2.0	21	95	0	73	53	14	7	24	1.66
49842340--49842364	13	1.9	13	100	0	50	8	0	24	68	1.16
49843476--49843577	41	2.5	41	90	3	152	27	18	25	28	1.98
49860510--49860611	41	2.5	41	90	3	152	27	19	25	27	1.99
49861776--49861922	28	5.2	28	81	8	165	40	10	19	29	1.86
49861776--49862002	56	4.1	56	80	5	178	36	12	22	29	1.91
49861790--49862061	27	10.0	27	80	7	153	33	14	22	29	1.94
49861907--49862061	27	5.8	27	82	7	174	27	17	25	29	1.97
49861905--49862048	54	2.7	54	86	3	193	28	16	26	28	1.97
49864165--49864576	31	13.3	31	81	2	452	47	8	15	27	1.75
49866110--49866198	27	3.3	26	76	6	79	35	16	29	17	1.93
49866084--49866338	121	2.1	120	85	2	332	32	16	27	22	1.96
49866084--49866387	121	2.5	121	82	3	319	31	16	28	23	1.96
49892088--49892166	37	2.1	37	90	0	122	25	31	18	24	1.98
49892285--49892840	47	11.7	47	94	1	916	29	29	8	32	1.87
49892285--49892819	239	2.3	237	94	1	912	29	29	8	32	1.87
49892296--49892840	286	1.9	284	92	1	880	29	29	8	31	1.87
49903028--49903082	16	3.4	16	80	7	67	41	5	20	32	1.75
49903644--49903771	62	2.1	62	96	0	238	25	14	12	47	1.79
49909237--49909289	23	2.4	22	76	20	56	9	18	1	69	1.25
49914611--49914678	21	3.2	21	69	19	68	48	5	10	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49914612--49914709	43	2.2	44	96	1	180	50	6	10	33	1.61
49914783--49914811	10	2.7	11	89	10	51	55	0	0	44	0.99
49923822--49923922	53	1.9	53	89	0	157	39	11	9	38	1.75
49925265--49925324	17	3.5	17	73	8	59	15	16	35	33	1.90
49926634--49926694	2	31.0	2	80	9	63	50	3	3	42	1.34
49926631--49926655	12	2.1	12	100	0	50	44	0	8	48	1.32
49927360--49927468	41	2.6	41	88	1	155	23	21	28	26	1.99
49928730--49928773	17	2.6	18	82	7	56	2	20	4	72	1.13
49932171--49932666	47	10.6	47	93	3	804	33	8	29	29	1.87
49932785--49932863	37	2.1	37	92	0	131	25	18	30	25	1.98
49936801--49936928	24	5.2	25	69	10	66	32	21	28	18	1.97
49939542--49939691	45	3.4	44	77	5	142	37	22	14	26	1.92
49943404--49943744	179	1.9	179	95	0	610	36	22	13	28	1.91
49944368--49944401	17	2.0	17	88	11	52	17	26	8	47	1.77
49946656--49946690	16	2.2	16	100	0	70	40	11	25	22	1.88
49955378--49955497	52	2.3	52	92	1	197	31	30	10	26	1.90
49963884--49963968	39	2.2	39	91	0	134	43	22	3	30	1.70
49971627--49971751	52	2.4	51	82	4	162	28	31	14	25	1.95
49979280--49979428	66	2.3	66	95	1	264	39	21	7	31	1.81
49980700--49980728	10	2.9	10	100	0	58	41	20	6	31	1.79
49983167--49983289	61	2.0	61	93	3	212	37	15	15	31	1.89
49986530--49986663	62	2.2	59	85	5	180	43	3	2	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49987778--49987803	8	3.2	8	100	0	52	11	11	11	65	1.48
49990667--49990768	42	2.3	43	78	8	109	40	8	16	34	1.80
49991058--49991088	15	2.1	15	100	0	62	41	19	32	6	1.77
49993488--49993600	30	3.7	31	73	12	99	25	23	9	40	1.85
49998834--49998873	21	2.0	20	85	5	53	55	2	20	22	1.56
50006645--50006692	22	2.2	22	100	0	96	29	27	25	18	1.98
50006795--50006838	22	2.0	22	86	8	63	22	29	15	31	1.95
50008334--50008361	14	2.0	14	100	0	56	50	0	0	50	1.00
50008356--50008421	29	2.2	30	84	10	91	56	3	3	37	1.30
50008482--50008530	20	2.5	20	82	0	62	65	0	4	30	1.11
50008830--50008882	23	2.3	22	81	9	61	41	0	0	58	0.98
50009673--50009734	32	1.9	33	83	9	83	66	4	3	25	1.27
50012792--50012856	27	2.3	29	81	5	80	40	1	3	55	1.25
50012883--50012938	28	2.0	27	82	6	67	33	0	5	60	1.19
50021667--50021742	25	3.0	26	79	7	77	31	21	23	23	1.98
50021699--50021769	25	2.9	25	75	10	74	33	22	25	18	1.96
50021713--50021851	25	5.7	25	72	13	76	33	19	28	18	1.96
50021750--50021876	50	2.6	49	77	5	123	33	20	28	17	1.95
50021750--50021876	25	5.2	25	75	13	95	33	20	28	17	1.95
50025362--50025425	22	2.9	22	83	0	65	20	29	15	34	1.94
50026636--50026667	7	4.7	7	92	7	57	25	0	0	75	0.81
50026636--50026667	13	2.4	14	94	5	57	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50027583--50027636	24	2.3	23	81	9	65	44	3	0	51	1.19
50027583--50027641	25	2.3	24	80	8	64	45	3	0	50	1.18
50027743--50027813	18	3.7	19	73	19	67	50	1	1	46	1.18
50027784--50027828	20	2.1	22	84	8	58	55	0	0	44	0.99
50028212--50028264	20	2.4	23	84	12	76	47	0	0	52	1.00
50036626--50036676	18	3.1	17	76	21	54	68	0	19	11	1.20
50037157--50037215	3	20.0	3	92	3	102	66	0	32	1	1.02
50038803--50038837	16	2.1	17	89	5	54	11	51	0	37	1.38
50041511--50041599	43	2.1	43	100	0	178	37	17	20	24	1.94
50045348--50045385	15	2.4	17	86	8	53	71	2	7	18	1.23
50045708--50045770	27	2.4	26	80	12	67	61	3	3	31	1.27
50045834--50045876	21	2.0	21	82	8	52	48	4	11	34	1.60
50047186--50047487	44	6.9	44	82	11	359	27	23	22	26	1.99
50047286--50047366	37	2.2	37	82	4	103	27	23	23	25	2.00
50047249--50047410	81	2.0	81	91	0	261	27	23	22	25	2.00
50047381--50047488	52	2.1	52	100	0	216	30	20	25	24	1.98
50047487--50047765	88	3.2	87	78	5	285	23	23	25	27	2.00
50047701--50047808	43	2.5	44	74	8	112	24	29	22	24	1.99
50049031--50049079	21	2.3	21	82	0	62	16	14	0	69	1.19
50049031--50049080	7	7.1	7	76	17	50	16	16	0	68	1.22
50049969--50050034	6	10.7	6	82	6	51	7	9	13	69	1.35
50049981--50050034	18	2.9	18	83	5	63	5	9	12	72	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50054827--50054939	59	1.9	60	94	5	203	53	7	8	30	1.59
50060694--50060723	7	4.3	7	91	0	51	16	56	0	26	1.40
50067339--50067391	27	2.0	27	88	0	79	15	24	24	35	1.94
50074692--50074745	26	2.1	26	100	0	108	64	11	7	16	1.47
50075800--50075858	31	1.9	30	86	3	82	11	20	16	50	1.76
50076006--50076071	10	6.7	10	76	8	64	53	1	1	43	1.19
50076005--50076071	20	3.4	19	82	8	89	52	1	1	44	1.19
50076024--50076081	30	1.9	30	82	6	73	56	1	1	39	1.19
50076692--50076763	28	2.5	29	77	2	74	50	33	0	16	1.46
50076777--50076826	22	2.2	23	85	3	66	44	36	2	18	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213