genome.fa.s14.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  127  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36876510--36876560	25	2.0	26	96	3	95	43	0	0	56	0.99
36877188--36877212	8	3.1	8	100	0	50	24	0	0	76	0.80
36884401--36884447	24	1.9	25	83	12	62	53	19	8	19	1.70
36889827--36889857	13	2.4	13	94	0	53	25	3	9	61	1.42
36889953--36890204	50	5.1	50	92	0	380	24	21	33	20	1.97
36892374--36892597	40	5.7	40	84	5	231	24	20	27	26	1.99
36892448--36892630	79	2.3	80	82	1	226	25	20	27	25	1.99
36900256--36900478	40	5.6	40	86	3	236	24	21	27	26	1.99
36900331--36900513	79	2.3	80	82	1	226	25	20	27	25	1.99
36902692--36902736	21	2.1	21	84	8	56	15	33	31	20	1.93
36905448--36905528	29	2.8	29	100	0	162	32	27	13	27	1.94
36919849--36920071	40	5.6	40	85	3	227	24	21	27	26	1.99
36919924--36920106	79	2.3	80	82	1	226	25	20	27	25	1.99
36927718--36927940	40	5.6	40	86	3	236	24	21	27	26	1.99
36927793--36927975	79	2.3	80	82	1	226	25	20	27	25	1.99
36963811--36963840	10	3.0	10	100	0	60	40	0	40	20	1.52
36969203--36969236	16	2.2	16	89	5	52	8	41	0	50	1.34
36970510--36970554	22	2.0	22	83	8	56	28	2	20	48	1.61
36987387--36987420	16	2.2	16	94	5	61	52	14	5	26	1.64
37002340--37002383	11	3.6	11	80	19	52	45	18	6	29	1.75
37009679--37009866	40	4.7	40	95	0	313	30	21	26	21	1.98
37014205--37014252	20	2.3	21	82	10	55	31	22	31	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37014213--37014252	21	2.0	20	85	5	53	30	20	32	17	1.95
37034532--37034569	17	2.2	18	86	13	53	18	26	0	55	1.43
37040540--37040716	27	6.5	27	80	3	167	26	15	29	28	1.96
37040540--37040695	82	1.9	81	85	3	215	26	16	29	27	1.96
37043199--37043316	58	2.0	59	93	1	202	30	5	16	48	1.67
37046384--37046424	21	2.0	21	85	0	55	31	4	0	63	1.15
37046647--37046678	16	2.0	16	93	0	55	25	15	0	59	1.36
37046902--37047096	51	3.8	51	75	8	209	30	25	17	26	1.97
37046905--37047088	101	1.8	102	85	3	264	30	23	18	27	1.97
37053894--37054382	47	10.4	47	95	0	816	32	8	29	29	1.87
37054501--37054579	37	2.1	37	86	4	106	25	17	30	26	1.97
37060207--37060245	19	2.1	19	95	0	69	51	10	10	28	1.68
37060197--37060322	54	2.3	54	91	0	207	45	14	8	31	1.75
37060261--37060297	19	1.9	19	88	0	56	54	10	5	29	1.57
37062616--37062659	19	2.3	19	100	0	88	0	45	25	29	1.54
37064776--37064953	27	6.6	27	83	5	180	29	27	15	27	1.96
37064797--37064952	82	1.9	81	86	3	224	28	27	16	27	1.97
37072846--37073023	27	6.6	27	83	5	180	29	27	15	27	1.96
37072867--37073022	82	1.9	81	86	3	224	28	27	16	27	1.97
37075470--37075501	11	3.1	11	82	17	50	62	18	0	18	1.33
37075470--37075507	9	4.0	9	93	6	58	57	21	0	21	1.40
37075470--37075516	9	4.8	10	86	7	53	55	21	0	23	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37075620--37075672	9	5.7	9	73	8	52	50	13	7	28	1.68
37075620--37075677	19	3.1	19	94	0	98	50	12	10	27	1.72
37080319--37080379	25	2.4	25	81	10	72	39	3	0	57	1.15
37091085--37091138	27	2.0	27	81	0	63	37	24	16	22	1.94
37090933--37091252	168	1.9	168	95	0	577	34	25	11	28	1.91
37093505--37093566	10	5.9	10	74	10	52	33	32	3	30	1.74
37093505--37093567	21	3.0	21	88	2	90	33	33	3	30	1.74
37103389--37103413	12	2.1	12	100	0	50	76	8	0	16	1.02
37105455--37105510	26	2.2	26	100	0	112	30	7	19	42	1.78
37112860--37112889	15	2.0	15	100	0	60	46	6	6	40	1.56
37115913--37115966	25	2.2	25	83	12	67	55	0	1	42	1.10
37116630--37116691	30	2.1	30	84	6	81	50	9	6	33	1.61
37124818--37124879	20	3.0	20	72	9	52	51	14	4	29	1.63
37124929--37124962	9	3.8	9	88	0	50	47	8	0	44	1.34
37132216--37132355	43	3.3	43	84	0	199	30	29	18	22	1.97
37133707--37133884	27	6.6	27	81	3	169	29	27	15	27	1.96
37133733--37133883	82	1.9	81	87	4	223	28	27	16	27	1.97
37140529--37140706	27	6.6	27	83	3	178	29	28	15	26	1.96
37140555--37140705	82	1.9	81	88	4	232	28	27	16	27	1.97
37141602--37141851	43	5.8	43	83	4	301	30	34	16	19	1.94
37141602--37141828	85	2.6	85	84	3	303	30	33	16	19	1.94
37141602--37141851	128	1.9	129	88	4	380	30	34	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37142727--37143189	23	20.3	23	69	15	248	40	23	5	30	1.77
37142735--37143187	91	5.0	91	77	7	384	41	23	5	30	1.76
37142779--37143187	137	3.0	137	94	1	703	41	23	4	30	1.75
37143525--37143608	39	2.1	39	84	4	105	52	4	11	30	1.59
37146929--37146991	22	2.8	22	92	7	101	55	6	11	26	1.59
37148068--37148263	41	4.8	41	82	3	243	28	23	26	21	1.99
37150278--37150498	40	5.6	40	79	8	211	24	20	27	27	1.99
37158208--37158391	40	4.6	40	81	6	187	23	20	27	28	1.99
37158208--37158388	80	2.3	81	82	9	212	23	20	28	27	1.99
37158209--37158428	40	5.6	38	76	10	156	24	20	27	27	1.99
37164295--37164320	12	2.2	12	100	0	52	76	7	0	15	0.99
37164335--37164378	14	3.1	15	77	12	56	79	0	18	2	0.83
37165222--37165306	45	1.9	44	87	2	125	40	18	24	16	1.91
37166573--37167223	88	7.4	88	91	0	1047	29	22	23	24	1.99
37166580--37167223	175	3.7	176	91	1	1042	29	22	23	24	1.99
37167223--37167561	89	3.8	88	84	0	399	29	26	22	20	1.99
37167282--37167544	45	5.9	43	70	11	129	28	27	23	20	1.99
37167333--37167556	45	5.0	45	71	10	147	28	27	23	20	1.99
37167826--37168854	129	8.0	129	87	0	1425	32	20	20	26	1.97
37167877--37168756	85	10.3	83	66	12	341	32	20	20	26	1.97
37169191--37169242	24	2.1	26	85	7	72	76	9	1	11	1.09
37177504--37177555	23	2.2	25	83	13	65	50	3	1	44	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37178778--37178805	3	9.3	3	100	0	56	35	0	0	64	0.94
37180410--37180434	13	1.9	13	100	0	50	36	8	0	56	1.29
37181101--37181241	39	3.5	41	80	14	152	62	1	2	33	1.19
37181176--37181208	17	1.9	17	93	0	57	63	3	0	33	1.10
37181101--37181247	41	3.7	37	74	16	125	63	1	2	32	1.17
37182635--37182734	8	11.2	8	70	16	56	49	2	1	48	1.19
37182590--37182651	20	3.1	19	73	13	61	53	0	3	43	1.17
37182636--37182774	9	14.9	9	69	16	52	46	2	0	50	1.21
37182594--37182733	9	14.9	9	73	15	70	50	1	2	45	1.22
37182718--37182778	20	3.0	20	69	4	59	44	3	0	52	1.17
37185026--37185068	18	2.5	17	81	7	52	60	2	0	37	1.10
37185176--37185238	20	3.3	20	62	20	53	33	23	19	23	1.97
37185898--37186061	87	1.9	84	85	7	224	39	9	12	39	1.75
37189744--37189792	22	2.2	22	77	0	53	59	0	18	22	1.38
37190321--37190358	5	7.2	5	88	11	58	42	0	18	39	1.50
37190321--37190358	11	3.5	11	96	3	69	42	0	18	39	1.50
37190822--37190888	26	2.5	26	76	7	73	23	20	17	37	1.94
37192420--37192450	16	2.0	15	93	6	53	19	0	16	64	1.29
37193844--37193966	49	2.5	50	78	2	122	29	22	26	21	1.99
37194238--37194276	20	2.0	20	90	10	62	58	7	17	15	1.59
37198457--37198500	18	2.3	19	84	7	54	36	2	0	61	1.09
37200530--37200754	79	2.8	80	81	11	264	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37200530--37200754	40	5.7	40	87	5	271	26	22	26	24	2.00
37200530--37200754	119	1.9	120	82	9	291	26	22	26	24	2.00
37200537--37200787	79	3.2	78	79	12	244	27	21	26	24	1.99
37219750--37219869	63	2.0	59	85	6	159	50	15	10	24	1.75
37228283--37228393	45	2.5	45	86	0	150	41	17	16	25	1.89
37228456--37228520	34	1.9	34	83	0	85	44	18	16	20	1.87
37235283--37235470	51	3.7	51	84	2	218	29	28	16	25	1.97
37235283--37235470	101	1.9	101	82	3	243	29	28	16	25	1.97
37262544--37262731	50	3.8	50	84	0	232	22	28	23	25	1.99
37271881--37271910	13	2.3	13	94	0	51	30	6	13	50	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213