genome.fa.s14.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  95  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26589900--26590189	43	6.7	43	76	0	175	25	25	23	25	2.00
26590044--26590231	86	2.2	86	80	1	198	27	29	18	23	1.98
26590603--26590736	21	6.4	21	84	0	151	5	42	17	35	1.71
26590707--26590873	66	2.5	66	82	3	185	13	27	17	41	1.87
26596290--26596323	16	2.1	16	94	0	59	32	0	14	52	1.42
26596304--26596359	25	2.2	25	83	0	67	35	5	14	44	1.68
26596361--26596596	9	27.3	9	71	16	126	38	1	16	42	1.59
26596465--26596594	16	8.1	16	74	20	103	36	1	17	44	1.58
26596361--26596596	25	9.5	25	67	22	90	38	1	16	42	1.59
26596691--26596736	22	2.1	22	91	0	74	43	0	10	45	1.39
26596658--26597136	56	8.2	56	82	10	559	40	1	11	46	1.49
26596383--26596736	177	2.0	178	87	9	510	40	1	14	42	1.56
26596713--26596860	31	4.5	34	83	12	186	40	0	11	47	1.45
26596745--26597145	9	41.8	9	65	24	89	39	0	11	47	1.47
26596745--26596847	22	4.7	22	70	24	76	37	0	11	50	1.39
26596729--26597159	31	14.5	31	69	22	202	40	1	11	46	1.47
26596869--26596901	16	2.1	16	100	0	66	30	0	24	45	1.53
26596989--26597039	22	2.4	22	86	3	77	41	1	9	47	1.48
26597304--26597421	22	5.6	22	69	18	65	42	1	11	44	1.51
26597280--26597462	31	6.2	30	77	13	184	41	1	11	45	1.47
26597298--26597563	31	9.1	31	73	18	162	40	0	13	45	1.48
26597478--26597550	9	8.6	9	77	19	68	35	0	16	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26597479--26597511	16	2.1	16	100	0	66	30	0	24	45	1.53
26597775--26597807	17	1.9	17	93	0	57	36	36	0	27	1.57
26598669--26599362	114	6.1	114	87	4	976	27	22	19	30	1.98
26600459--26600870	125	3.3	125	95	0	727	29	20	18	31	1.97
26601058--26601090	6	5.3	6	96	3	57	39	45	0	15	1.46
26601396--26601431	5	7.2	5	100	0	72	80	0	0	19	0.71
26603176--26603227	24	2.2	24	82	6	61	57	1	1	38	1.21
26603208--26603260	10	5.2	9	79	18	52	60	1	3	33	1.26
26603208--26603260	21	2.6	18	76	23	52	60	1	3	33	1.26
26603783--26603812	15	2.0	15	93	0	51	60	0	3	36	1.14
26604532--26604586	19	2.8	20	78	13	60	63	1	9	25	1.34
26604602--26604626	13	1.9	13	100	0	50	72	0	28	0	0.86
26608350--26608439	26	3.5	27	82	7	107	33	24	26	15	1.95
26608495--26608578	25	3.4	25	77	12	68	28	20	28	22	1.98
26608512--26608578	25	2.7	25	79	6	75	28	19	26	25	1.99
26612312--26612342	16	1.9	16	93	0	53	32	0	6	61	1.21
26616633--26616684	16	3.3	15	78	5	50	48	1	32	17	1.58
26618248--26618301	18	2.9	18	83	2	63	44	9	46	0	1.35
26622041--26622099	29	2.0	29	83	0	73	16	25	18	38	1.92
26622070--26622166	49	2.0	48	90	6	151	22	25	18	32	1.97
26623779--26623928	56	2.5	60	80	10	182	28	24	24	22	1.99
26623801--26623923	56	2.2	56	92	1	203	31	23	22	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26623807--26623923	28	4.2	28	85	6	166	30	23	23	22	1.99
26624313--26624751	27	16.3	27	83	7	396	19	17	19	43	1.89
26625006--26625050	20	2.3	19	85	7	63	17	42	22	17	1.89
26635660--26636949	411	3.2	407	87	3	1831	32	17	11	38	1.86
26640657--26640699	20	2.2	20	86	0	59	44	6	0	48	1.29
26640658--26640718	32	1.9	32	83	12	81	44	4	1	49	1.33
26650749--26650774	5	5.2	5	100	0	52	80	0	19	0	0.71
26654035--26654071	6	6.2	6	100	0	74	16	0	51	32	1.45
26655470--26655530	31	1.9	32	83	3	79	44	9	4	40	1.59
26666265--26666307	12	3.6	12	93	0	68	39	16	13	30	1.87
26667552--26667586	15	2.3	15	90	0	52	14	2	0	82	0.77
26671197--26671279	20	4.3	20	69	14	57	54	1	0	44	1.08
26671211--26671295	11	8.6	10	69	20	63	48	1	0	50	1.08
26671184--26671302	57	2.1	58	89	6	181	49	1	0	47	1.17
26671225--26671302	15	5.3	15	67	22	58	46	0	0	53	1.00
26671300--26671379	10	8.6	10	67	20	57	42	0	1	56	1.07
26674398--26674442	22	2.0	22	95	0	81	46	15	11	26	1.79
26676990--26677326	124	2.7	126	83	3	421	29	16	21	32	1.95
26680560--26680788	23	9.5	23	68	20	137	27	0	25	46	1.59
26680551--26680621	29	2.5	29	93	2	117	26	1	26	45	1.62
26680588--26680651	22	3.0	20	78	10	65	25	1	26	46	1.61
26680635--26680697	29	2.2	29	85	5	83	30	1	25	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26680642--26680709	29	2.3	29	82	5	84	32	0	19	48	1.49
26680563--26680740	79	2.4	72	88	6	257	27	1	24	46	1.60
26680664--26681218	50	10.9	50	82	7	654	25	1	27	45	1.62
26680689--26680824	21	6.0	21	71	19	96	25	1	26	46	1.62
26680883--26680924	21	2.0	21	86	4	59	23	2	28	45	1.66
26680939--26680973	14	2.5	14	100	0	70	25	0	25	48	1.51
26680889--26681023	64	2.1	64	92	0	225	23	1	28	46	1.61
26680953--26681038	21	3.7	21	71	21	73	24	1	27	46	1.60
26680789--26681123	164	2.0	164	90	0	517	24	1	27	46	1.63
26680739--26681158	214	2.0	214	93	0	725	25	1	27	45	1.63
26681117--26681230	29	4.1	30	69	21	86	28	0	30	40	1.63
26681196--26681308	23	5.0	23	77	9	124	30	2	21	46	1.65
26681836--26681870	18	1.9	18	88	0	52	37	8	28	25	1.85
26682518--26682542	7	3.6	7	100	0	50	60	12	0	28	1.32
26683690--26683801	52	2.2	52	85	1	145	47	0	23	29	1.52
26683759--26683824	22	3.0	22	95	0	114	40	0	30	28	1.57
26684466--26684533	31	2.3	30	80	10	77	41	10	10	38	1.73
26696099--26696138	19	2.1	19	95	0	71	45	5	5	45	1.47
26696147--26696203	2	29.0	2	76	3	53	43	3	0	52	1.18
26696117--26696235	41	3.1	39	74	20	131	46	5	1	47	1.34
26696147--26696203	12	4.3	12	80	20	69	43	3	0	52	1.18
26700178--26700220	21	2.0	21	86	8	61	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26700444--26700533	42	2.1	44	89	8	141	36	25	4	33	1.76
26700515--26700554	16	2.5	16	79	0	53	30	22	5	42	1.75
26701625--26701687	25	2.5	25	92	0	108	49	19	9	22	1.76
26705866--26706004	35	4.0	35	77	7	131	33	3	15	47	1.62
26706231--26706312	36	2.3	36	82	0	92	30	4	19	45	1.71
26713230--26713276	13	3.5	14	78	16	55	51	2	12	34	1.52
26716410--26716467	29	2.0	29	86	6	82	18	8	1	70	1.21
26716942--26717270	110	3.0	110	92	0	541	31	16	20	32	1.94
26721465--26721509	13	3.4	14	85	8	60	68	0	17	13	1.20
26721465--26721509	7	6.9	7	82	12	60	68	0	17	13	1.20
26721453--26721509	20	3.0	20	85	7	75	71	0	17	10	1.12
26722768--26722903	43	3.2	43	65	12	107	28	25	22	23	1.99
26722765--26723205	86	5.3	85	87	8	656	27	24	24	23	2.00
26722721--26723205	160	3.0	159	89	4	695	28	24	24	22	2.00
26723217--26723496	43	6.5	44	75	9	190	33	23	19	23	1.97
26725098--26725154	30	1.9	29	85	3	78	17	5	3	73	1.16
26725629--26725957	110	3.0	110	89	0	505	30	15	20	33	1.94
26739849--26740414	47	12.0	47	94	1	938	33	8	29	28	1.87
26739849--26740414	233	2.4	235	93	1	947	33	8	29	28	1.87
26740533--26740611	37	2.1	37	88	4	115	25	18	30	25	1.98
26742476--26742578	43	2.4	43	96	0	188	22	12	35	29	1.91
26742560--26742633	29	2.6	29	88	0	103	24	16	32	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26743026--26743179	40	3.8	40	91	0	236	25	22	27	24	2.00
26742944--26743173	80	2.9	80	81	5	225	26	23	26	24	2.00
26742944--26743174	120	1.9	120	82	5	288	25	22	26	24	2.00
26747116--26747167	24	2.2	24	89	0	77	55	9	1	32	1.43
26749077--26749128	24	2.2	24	89	0	77	55	9	1	32	1.43
26749284--26749709	47	9.0	47	93	1	683	32	8	29	28	1.87
26749284--26749709	187	2.3	188	91	2	676	32	8	29	28	1.87
26749828--26749906	37	2.1	37	88	4	115	25	18	30	25	1.98
26758875--26758927	25	2.1	26	82	3	63	33	20	7	37	1.81
26759078--26759128	6	7.9	7	93	6	74	15	21	0	62	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213