genome.fa.s14.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  20  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5361486--5361551	21	3.0	22	86	8	91	40	7	7	43	1.61
5361667--5361705	19	2.1	19	85	9	53	38	15	7	38	1.76
5361715--5361765	18	2.9	17	77	8	57	47	7	9	35	1.66
5362260--5362321	8	8.0	8	92	5	85	0	16	0	83	0.64
5362260--5362320	15	4.0	15	87	10	88	0	16	0	83	0.64
5362457--5362482	12	2.2	12	100	0	52	0	7	7	84	0.77
5362613--5362658	3	15.0	3	82	17	51	0	34	0	65	0.93
5362601--5362655	21	2.7	21	85	2	67	0	30	0	69	0.89
5362627--5362655	10	2.9	10	100	0	58	0	37	0	62	0.96
5362714--5362763	10	5.2	10	80	7	59	0	30	0	70	0.88
5362718--5362760	19	2.3	19	88	11	63	0	30	0	69	0.88
5363007--5363121	30	3.9	29	77	11	110	44	3	20	31	1.69
5363022--5363121	30	3.4	30	84	2	123	44	4	21	31	1.70
5363119--5363153	17	2.0	18	88	5	54	20	0	2	77	0.90
5363387--5363950	54	10.8	52	89	7	835	37	18	15	28	1.91
5363387--5363950	104	5.4	105	90	5	882	37	18	15	28	1.91
5363387--5363953	158	3.6	157	90	5	893	37	18	15	28	1.91
5364449--5364482	16	2.1	17	89	10	54	76	2	0	20	0.92
5364480--5364596	30	3.9	29	80	7	119	30	21	3	44	1.69
5364842--5364891	10	5.2	10	80	7	59	70	0	30	0	0.88
5364845--5364887	19	2.3	19	88	11	63	69	0	30	0	0.88
5364947--5364983	14	2.8	13	91	4	56	64	0	35	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5364948--5365000	21	2.5	22	81	6	65	71	0	28	0	0.86
5365251--5365307	7	7.9	7	94	5	96	84	0	15	0	0.63
5365250--5365309	22	2.7	22	92	2	93	83	0	16	0	0.65
5365803--5365852	17	2.9	16	77	11	55	34	10	8	48	1.66
5365847--5365902	18	3.1	19	79	5	62	33	10	14	41	1.80
5365847--5365920	18	4.0	18	75	10	60	33	12	12	41	1.79
5365847--5365920	37	2.0	37	84	5	96	33	12	12	41	1.79
5365936--5366004	18	3.9	18	86	5	88	24	23	10	42	1.85
5365935--5366022	18	5.2	16	84	9	79	28	20	10	40	1.85
5365947--5366040	34	2.8	33	83	8	100	28	18	8	44	1.78
5366019--5366101	21	4.0	21	76	21	95	40	7	8	43	1.63
5365986--5366292	17	17.2	17	69	19	93	34	10	9	44	1.72
5366019--5366084	22	3.0	23	86	6	82	43	7	7	40	1.61
5374455--5374697	122	2.0	123	86	3	337	27	13	21	36	1.92
5374610--5375400	72	11.1	72	84	10	961	30	16	18	34	1.93
5374999--5375400	73	5.6	72	93	3	674	30	17	18	33	1.94
5374999--5375412	145	2.9	143	92	3	660	29	17	18	34	1.94
5375484--5375516	14	2.4	14	95	5	59	12	9	9	69	1.36
5375315--5375506	86	2.2	87	77	11	214	24	18	16	40	1.91
5375528--5375773	52	4.6	54	86	7	344	31	15	17	34	1.92
5376021--5376115	30	3.2	29	82	8	111	29	22	3	45	1.68
5376391--5376425	18	2.0	17	94	5	61	62	0	37	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5376380--5376425	23	2.0	23	86	0	65	67	0	32	0	0.91
5376480--5376525	3	15.0	3	82	13	58	63	0	36	0	0.95
5376483--5376511	10	2.9	10	100	0	58	62	0	37	0	0.96
5376480--5376525	13	3.7	13	81	18	62	63	0	36	0	0.95
5376800--5376877	23	3.3	23	77	18	88	82	0	17	0	0.68
5376817--5376867	7	6.9	7	89	10	75	84	0	15	0	0.63
5376800--5376876	15	5.1	15	87	6	102	81	0	18	0	0.68
5376813--5376877	8	8.2	8	86	13	82	83	0	16	0	0.66
5377417--5377472	18	3.1	19	79	5	62	33	10	14	41	1.80
5377417--5377866	17	25.1	18	70	12	80	33	11	10	44	1.74
5377417--5377490	37	2.0	37	84	5	96	33	12	12	41	1.79
5377451--5377597	35	4.2	34	74	13	113	31	14	8	44	1.77
5377482--5377611	34	3.8	34	79	10	122	30	15	8	46	1.75
5377540--5377593	16	3.2	16	75	14	56	35	14	9	40	1.78
5377590--5377656	23	3.0	22	86	8	91	44	7	7	40	1.61
5377590--5377656	22	3.0	21	89	6	89	44	7	7	40	1.61
5377438--5377865	18	24.0	17	67	19	107	33	11	9	44	1.73
5377844--5377890	20	2.3	20	82	13	60	53	8	6	31	1.57
5380784--5380833	21	2.4	21	89	0	73	34	16	46	4	1.65
5383593--5383641	11	4.3	12	78	17	52	36	2	2	59	1.21
5386910--5386943	16	2.1	17	88	5	52	38	11	20	29	1.88
5388929--5389216	125	2.3	124	92	2	470	29	20	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5389950--5389983	3	11.3	3	100	0	68	67	0	32	0	0.91
5399472--5399502	14	2.3	13	94	5	53	61	6	6	25	1.45
5415156--5415192	18	2.1	18	90	10	58	51	21	13	13	1.75
5424195--5424264	23	3.0	24	72	16	65	5	21	5	67	1.33
5427980--5428027	24	2.0	24	100	0	96	37	8	12	41	1.73
5430930--5430963	6	5.7	6	96	0	50	17	17	20	44	1.87
5431527--5432043	277	1.8	281	80	7	620	17	13	17	50	1.77
5441431--5441571	42	3.6	42	77	16	183	21	17	28	32	1.96
5441475--5441703	33	6.5	33	68	22	146	20	19	28	31	1.97
5441435--5441573	75	1.9	75	98	0	269	20	18	27	33	1.96
5441473--5441676	102	2.0	103	93	0	347	21	19	27	31	1.97
5443666--5443773	41	2.7	40	85	5	128	26	20	25	27	1.99
5444864--5444892	9	3.2	9	100	0	58	44	34	0	20	1.52
5445481--5445523	6	6.8	6	92	7	68	46	16	16	20	1.84
5445503--5445652	45	3.3	45	89	0	210	42	21	18	18	1.90
5445510--5445669	45	3.8	39	76	14	124	40	22	18	18	1.92
5446857--5446896	17	2.3	17	86	4	53	5	15	7	72	1.24
5446912--5446943	16	1.9	17	93	6	57	53	3	0	43	1.16
5447056--5447108	22	2.6	19	81	16	70	52	0	0	47	1.00
5447061--5447107	11	4.3	11	77	20	53	57	0	0	42	0.98
5447078--5447107	14	2.1	14	100	0	60	56	0	0	43	0.99
5449594--5449662	16	4.2	16	96	3	129	24	0	37	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5449594--5449662	33	2.1	32	97	2	129	24	0	37	37	1.56
5449887--5449928	15	2.9	15	86	10	61	54	0	0	45	0.99
5449878--5449919	15	2.7	16	85	14	61	54	2	0	42	1.13
5449884--5449932	16	2.9	18	74	20	52	57	0	0	42	0.99
5450114--5450165	15	3.6	15	80	12	56	53	1	0	44	1.11
5450249--5450289	16	2.5	17	85	14	52	53	0	2	43	1.13
5449881--5450290	120	3.4	120	94	2	711	50	5	1	41	1.36
5453260--5453562	159	1.9	159	100	0	606	46	19	10	23	1.81
5456034--5456142	35	3.1	35	74	17	125	55	2	2	38	1.28
5456040--5456150	36	3.1	37	71	18	117	58	3	2	35	1.30
5456298--5456340	17	2.6	16	85	3	50	60	4	11	23	1.50
5459080--5459184	35	2.9	36	75	18	128	55	3	3	37	1.36
5459156--5459213	23	2.6	23	78	10	57	55	3	0	41	1.17
5459357--5459394	17	2.3	16	95	4	67	55	10	7	26	1.61
5461565--5461590	3	8.7	3	100	0	52	34	0	0	65	0.93
5466636--5466679	21	2.1	21	83	8	54	68	0	6	25	1.14
5467689--5467732	13	3.2	13	75	12	52	34	13	9	43	1.76
5468509--5468533	10	2.5	10	100	0	50	48	0	8	44	1.32
5468516--5468659	56	2.5	57	76	12	161	46	7	9	36	1.65
5468629--5468685	26	2.2	26	100	0	114	59	7	7	26	1.49
5468683--5469271	29	20.7	29	88	2	838	25	0	23	50	1.53
5468683--5469271	57	10.3	57	93	1	932	25	0	23	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5468703--5469306	86	7.1	81	85	7	439	25	0	23	50	1.54
5469501--5469556	24	2.3	24	90	0	85	3	25	30	41	1.72
5470501--5470525	7	3.6	7	100	0	50	60	12	0	28	1.32
5474561--5474623	30	2.1	31	93	3	110	65	0	0	34	0.93
5474669--5474720	22	2.4	22	93	0	95	42	0	30	26	1.56
5495368--5495579	108	1.9	110	89	3	331	25	6	15	52	1.66
5498241--5498285	23	2.0	23	86	8	65	53	2	4	40	1.33
5503363--5503388	7	3.7	7	100	0	52	15	15	0	69	1.20
5511030--5511085	27	2.0	28	82	6	69	50	3	12	33	1.58
5511431--5511467	16	2.4	16	95	4	67	56	5	2	35	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213