genome.fa.s14.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  121  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34812188--34812404	78	2.8	78	77	14	198	27	27	20	24	1.99
34833172--34833206	15	2.3	15	90	5	52	34	2	5	57	1.37
34839421--34839463	21	2.0	21	81	0	50	41	6	16	34	1.75
34847673--34847710	19	2.0	19	94	0	67	36	18	5	39	1.73
34854025--34854191	42	4.0	42	84	2	196	19	17	25	36	1.94
34855057--34855095	20	2.0	20	84	0	51	53	2	7	35	1.43
34854994--34855260	144	1.9	145	84	4	371	44	6	8	40	1.61
34855247--34855302	27	2.0	27	89	3	85	44	1	10	42	1.49
34855953--34856021	10	7.1	9	73	24	52	20	4	1	73	1.07
34855969--34855999	16	2.0	16	93	6	55	19	6	3	70	1.22
34871795--34871819	5	5.0	5	100	0	50	60	0	0	40	0.97
34876409--34876818	86	4.8	86	81	4	381	44	12	13	29	1.80
34876489--34876818	174	1.9	173	84	5	445	44	11	13	30	1.79
34878040--34878080	20	2.0	20	85	9	55	31	4	7	56	1.48
34883469--34883543	28	2.7	28	87	0	105	36	20	10	33	1.87
34883530--34883623	28	3.4	28	82	1	100	31	25	12	29	1.93
34883777--34883926	57	2.6	56	88	2	219	37	29	9	24	1.86
34890032--34890213	51	3.6	49	80	5	186	24	17	26	31	1.97
34890033--34890224	102	1.9	100	84	4	260	24	17	27	30	1.97
34892229--34892305	37	2.1	37	100	0	154	32	27	5	35	1.79
34894882--34895006	61	2.0	61	98	0	241	30	19	16	33	1.94
34895374--34895523	28	5.4	28	82	2	133	28	22	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34901973--34902019	18	2.3	21	79	13	55	4	27	2	65	1.22
34908426--34908487	32	1.9	32	83	0	79	30	11	17	40	1.85
34908593--34908643	18	2.8	17	80	14	57	62	5	1	29	1.29
34908712--34908780	28	2.4	28	82	2	84	59	2	1	36	1.21
34908858--34909085	75	3.1	75	98	1	449	32	25	17	25	1.97
34912275--34912351	27	2.9	27	72	12	70	33	7	6	51	1.56
34912979--34913024	22	2.1	22	87	0	65	21	10	6	60	1.52
34912985--34913028	11	4.0	11	85	11	54	22	9	9	59	1.56
34913211--34913247	11	3.5	11	85	7	58	29	0	0	70	0.88
34916834--34916892	21	2.8	21	79	10	57	42	20	13	23	1.88
34917168--34917244	26	3.0	26	81	5	68	18	24	32	24	1.97
34918657--34918840	40	4.6	40	82	7	187	28	27	20	23	1.99
34918655--34918840	80	2.3	79	82	9	209	29	27	19	23	1.99
34920445--34920505	29	2.1	29	84	0	77	22	27	26	22	1.99
34920489--34920561	14	5.1	14	69	14	51	27	28	21	21	1.99
34920613--34920698	14	5.9	15	74	12	63	25	25	26	22	2.00
34920613--34920697	29	2.9	30	81	6	86	25	25	25	22	2.00
34920693--34920776	44	2.0	42	80	4	96	30	32	20	16	1.95
34930849--34930873	10	2.5	10	100	0	50	40	0	0	60	0.97
34932052--34932084	17	1.9	17	93	0	57	36	9	15	39	1.79
34945268--34945297	14	2.1	14	100	0	60	40	36	0	23	1.55
34951316--34951464	50	3.0	50	92	2	237	55	10	7	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34954883--34954941	27	2.2	27	96	0	109	27	23	5	44	1.74
34956208--34956273	21	3.0	22	86	4	80	30	4	30	34	1.78
34957519--34957667	51	3.0	51	92	2	232	55	11	7	26	1.62
34961738--34961780	12	3.4	12	75	12	50	58	13	13	13	1.64
34961723--34961807	26	3.2	26	93	5	134	55	15	11	17	1.69
34968137--34968194	21	2.8	20	73	5	53	29	10	22	37	1.87
34970340--34970413	21	3.5	21	81	3	87	17	35	24	22	1.95
34970340--34970434	42	2.3	42	83	7	113	18	35	23	22	1.96
34970364--34970469	42	2.5	42	81	6	108	22	37	22	16	1.94
34971410--34971470	23	2.6	23	81	2	68	42	16	13	27	1.85
34971417--34971477	24	2.6	23	81	2	68	44	16	14	24	1.85
34977365--34977589	40	5.7	40	84	5	269	24	21	28	25	1.99
34977446--34977608	40	4.1	40	87	5	136	25	22	29	23	1.99
34977365--34977622	119	2.2	119	81	6	283	25	21	28	24	1.99
34982477--34982509	16	2.0	17	94	5	59	81	0	18	0	0.68
34982477--34982510	12	2.7	13	90	9	61	79	0	20	0	0.73
34986533--34986906	190	2.0	190	92	0	622	24	13	22	39	1.90
34988318--34988411	49	1.9	49	93	0	161	41	6	25	26	1.79
34989194--34989229	14	2.5	15	86	4	56	80	0	5	13	0.88
34989222--34989268	21	2.2	21	77	7	51	68	2	8	21	1.27
34994265--34994303	18	2.2	18	85	0	51	61	2	23	12	1.43
34997116--34997167	27	1.9	27	88	0	77	38	26	19	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34997635--34997759	27	4.6	27	74	15	105	31	11	19	38	1.87
35007615--35007655	20	2.0	20	85	0	55	48	14	2	34	1.57
35013423--35013494	25	2.9	24	79	8	72	29	25	20	25	1.99
35013451--35013504	25	2.2	25	83	12	67	31	24	20	24	1.98
35019064--35019094	2	15.5	2	100	0	62	48	0	0	51	1.00
35019737--35019776	21	1.9	21	84	0	53	37	2	5	55	1.35
35023331--35023377	24	2.0	24	84	12	62	21	2	4	72	1.12
35034305--35034361	20	2.9	18	76	12	51	19	3	7	70	1.26
35041274--35041332	28	2.1	28	80	0	64	25	23	25	25	2.00
35041436--35041506	26	2.7	26	84	4	90	33	25	23	16	1.96
35041681--35041768	27	3.3	27	87	6	124	15	14	21	47	1.82
35042818--35042855	13	3.0	13	84	7	51	63	0	28	7	1.23
35049158--35049229	26	2.8	26	78	4	83	31	23	23	20	1.98
35049391--35049450	27	2.2	28	78	3	68	20	18	21	40	1.92
35049404--35049520	27	4.3	26	81	11	137	17	16	17	48	1.81
35049404--35049520	54	2.2	54	86	6	157	17	16	17	48	1.81
35050523--35050570	23	2.1	23	100	0	96	47	4	43	4	1.41
35056006--35056054	22	2.2	23	82	10	66	42	18	6	32	1.75
35067431--35067780	122	2.8	125	87	3	492	30	16	20	32	1.95
35070977--35071353	23	15.9	23	73	20	314	28	0	25	45	1.56
35070982--35071353	96	3.9	96	81	14	362	28	0	26	45	1.56
35070977--35071353	74	5.3	72	76	15	308	28	0	25	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35071050--35071268	51	4.4	51	87	9	317	27	0	27	44	1.54
35071078--35071229	45	3.2	45	87	10	241	26	0	29	44	1.55
35071139--35071258	29	4.3	29	80	20	139	26	0	29	44	1.55
35071868--35071902	18	1.9	18	94	0	61	34	8	31	25	1.86
35072537--35072561	7	3.6	7	100	0	50	60	12	0	28	1.32
35073722--35073795	22	3.4	22	87	9	98	43	0	32	24	1.55
35073738--35073794	10	5.2	11	77	14	64	45	0	33	21	1.52
35074992--35075062	26	2.7	26	93	0	124	23	23	22	29	1.99
35077441--35077520	42	1.9	42	89	0	124	33	13	17	35	1.89
35081051--35081228	40	4.5	40	81	6	193	25	20	26	26	1.99
35080998--35081178	80	2.3	81	83	9	221	24	21	27	27	1.99
35090666--35090843	27	6.6	27	83	3	205	26	15	28	29	1.96
35090667--35090822	82	1.9	81	88	3	233	26	15	28	29	1.96
35090663--35090843	82	2.2	81	83	2	229	27	15	27	29	1.96
35092289--35092472	40	4.6	40	83	6	205	23	21	27	27	1.99
35092289--35092469	80	2.3	81	84	9	230	23	21	27	27	1.99
35101708--35101774	34	2.0	34	93	0	116	43	8	16	31	1.79
35102862--35102887	6	4.3	6	100	0	52	80	19	0	0	0.71
35113300--35113369	26	2.9	24	72	16	65	38	25	15	20	1.92
35115935--35116118	40	4.6	40	83	6	205	23	21	27	27	1.99
35115935--35116115	80	2.3	81	84	9	230	23	21	27	27	1.99
35121339--35121383	22	2.0	22	100	0	90	13	20	17	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35130325--35130417	20	4.7	20	78	1	98	24	16	32	26	1.96
35130325--35130422	40	2.5	40	81	1	108	26	15	31	26	1.96
35132086--35132124	15	2.6	15	83	0	51	2	35	0	61	1.10
35132160--35132217	18	3.2	18	90	0	89	10	18	3	67	1.35
35132116--35132196	30	2.7	29	75	7	81	12	24	2	60	1.44
35134068--35134092	13	1.9	13	100	0	50	16	32	16	36	1.90
35136760--35136798	19	2.1	19	95	0	69	48	12	10	28	1.74
35143060--35143149	35	2.6	35	96	0	162	43	12	10	34	1.76
35143130--35143168	19	2.1	19	90	0	60	48	10	10	30	1.70
35148989--35149022	13	2.6	13	95	0	59	0	8	2	88	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213