genome.fa.s14.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  167  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50076777--50076830	23	2.4	22	87	3	72	46	33	1	18	1.60
50077154--50077222	21	3.5	21	64	22	58	52	4	0	43	1.21
50077149--50077232	38	2.2	39	93	2	143	50	3	0	46	1.19
50084793--50084870	39	2.0	39	97	0	147	21	10	20	47	1.80
50090273--50090316	19	2.2	19	84	12	52	45	0	2	52	1.13
50090273--50090311	16	2.5	15	83	8	51	43	0	2	53	1.14
50092447--50092507	31	2.0	31	100	0	122	19	4	16	59	1.55
50093348--50093635	145	2.0	144	89	2	436	39	9	24	26	1.86
50097617--50097698	27	3.1	27	82	6	89	32	21	21	23	1.98
50097931--50098159	32	7.3	32	72	9	107	20	19	20	39	1.93
50098007--50098121	59	1.9	59	87	3	169	20	21	20	37	1.95
50098210--50098263	26	2.1	26	82	0	63	22	25	18	33	1.97
50098217--50098268	26	2.0	26	84	0	68	25	23	17	34	1.96
50103457--50103906	226	2.0	226	92	0	740	32	12	21	33	1.91
50105638--50105696	17	3.4	17	72	4	55	40	16	3	38	1.66
50107960--50108003	19	2.2	20	96	4	81	34	0	2	63	1.07
50107967--50108009	19	2.4	17	85	14	52	41	0	2	55	1.12
50107968--50108014	20	2.4	19	85	7	58	44	0	2	53	1.12
50108061--50108105	21	2.1	21	84	8	56	31	2	2	64	1.18
50108101--50108462	183	1.9	186	83	5	471	37	5	12	44	1.66
50108910--50108943	11	3.0	12	87	12	54	32	0	0	67	0.91
50108944--50108983	18	2.2	18	86	8	55	67	12	0	20	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50109907--50109949	14	3.1	14	93	0	68	39	0	0	60	0.97
50110420--50110465	22	2.1	23	84	11	62	36	2	2	58	1.22
50120343--50120384	19	2.1	21	86	8	61	59	2	0	38	1.10
50120420--50120454	5	7.0	5	100	0	70	20	60	0	20	1.37
50122262--50122353	37	2.5	37	81	8	107	31	22	1	44	1.60
50122262--50122354	36	2.5	35	80	13	98	31	23	1	44	1.61
50123141--50123190	21	2.5	21	81	15	61	52	2	2	44	1.24
50133524--50133837	153	2.1	153	97	0	592	26	15	15	42	1.87
50138342--50138574	38	6.1	38	78	4	227	18	20	27	33	1.96
50138350--50138575	76	3.0	76	84	2	258	19	20	26	33	1.97
50144869--50145151	38	7.4	38	79	7	279	18	20	29	32	1.96
50144869--50145136	114	2.4	114	86	2	351	18	20	29	31	1.96
50145746--50145908	81	2.0	80	95	1	290	19	24	24	31	1.98
50151204--50151293	41	2.2	41	86	7	121	23	23	2	51	1.60
50154723--50154874	27	5.6	27	93	3	241	30	28	13	26	1.94
50154723--50154874	55	2.8	55	94	0	259	30	28	13	26	1.94
50159474--50159536	25	2.5	25	82	5	74	25	26	22	25	2.00
50161379--50161475	46	2.1	46	94	0	167	37	10	20	31	1.86
50165898--50165957	27	2.3	27	88	2	86	33	11	11	43	1.77
50167904--50167956	23	2.3	23	80	3	63	50	1	3	43	1.30
50176333--50176431	42	2.3	43	84	1	119	32	23	18	26	1.97
50177971--50178011	19	2.1	19	86	4	55	41	2	2	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50180355--50180412	4	14.5	4	96	0	107	51	24	0	24	1.48
50180589--50180647	30	2.0	30	96	0	109	23	22	6	47	1.75
50185838--50185873	6	6.0	6	100	0	72	16	16	0	66	1.25
50190714--50192290	797	2.0	795	90	2	2423	36	17	16	28	1.92
50197291--50197335	22	2.0	22	83	8	56	53	6	6	33	1.53
50211102--50211286	44	4.2	44	68	8	142	33	21	21	23	1.97
50211094--50211374	132	2.1	132	93	0	474	32	20	22	23	1.98
50215318--50215401	25	3.4	25	88	0	114	47	13	19	20	1.82
50216647--50216682	15	2.4	15	100	0	72	58	13	0	27	1.36
50230870--50231046	45	4.0	45	83	5	191	22	15	27	34	1.94
50236093--50236165	35	2.1	35	94	0	128	32	21	6	38	1.80
50244232--50244304	20	3.6	21	70	18	57	36	17	28	16	1.92
50244237--50244319	40	2.1	40	86	0	112	38	18	28	14	1.90
50244250--50244348	40	2.5	39	81	6	108	34	19	27	19	1.95
50251312--50251415	41	2.5	41	89	3	156	35	16	27	20	1.94
50258762--50259058	46	6.5	46	96	1	528	28	22	15	33	1.95
50258657--50258871	108	2.0	107	93	0	367	27	24	14	33	1.94
50261294--50261340	25	1.9	25	86	4	69	42	0	0	57	0.98
50261306--50261364	26	2.3	26	85	2	75	47	0	0	52	1.00
50266070--50266127	28	2.0	29	83	9	75	27	0	10	62	1.28
50266811--50266835	12	2.1	12	100	0	50	24	24	24	28	2.00
50266995--50267043	9	5.4	9	90	0	80	44	22	8	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50267083--50267111	6	4.8	6	100	0	58	17	0	17	65	1.27
50267083--50267124	18	2.2	20	87	8	61	21	0	11	66	1.23
50267667--50267705	18	2.1	19	85	9	53	25	5	5	64	1.35
50268219--50268277	29	2.0	30	83	9	77	27	0	10	62	1.27
50268454--50268498	23	1.9	23	81	4	54	33	2	4	60	1.29
50269208--50269242	6	5.8	6	100	0	70	17	0	17	65	1.27
50269208--50269255	18	2.5	20	90	6	73	20	0	12	66	1.24
50269889--50269950	20	3.3	19	76	12	65	24	3	8	64	1.36
50275552--50275598	19	2.5	19	86	3	60	6	27	17	48	1.71
50275575--50275697	25	5.2	25	77	11	141	2	24	23	49	1.62
50275625--50275707	19	4.1	19	77	17	85	2	25	20	51	1.59
50275600--50275707	44	2.5	44	89	0	162	1	24	22	51	1.57
50275558--50275697	69	2.0	69	88	0	208	2	24	22	50	1.63
50279747--50279812	18	3.7	18	97	0	123	34	13	12	39	1.82
50280238--50280410	72	2.4	72	80	5	215	26	6	13	53	1.64
50281798--50281846	3	16.3	3	87	8	55	34	6	32	26	1.81
50285743--50285792	25	2.0	24	88	3	73	56	2	2	40	1.22
50285756--50285802	21	2.4	21	82	10	55	57	4	0	38	1.18
50298322--50298358	18	2.1	18	100	0	74	16	29	0	54	1.43
50301270--50301322	19	2.7	21	80	16	60	39	1	3	54	1.29
50317652--50318529	433	2.0	433	96	0	1614	26	14	10	48	1.76
50324716--50324928	46	4.7	46	94	2	385	30	21	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50324716--50324928	90	2.3	91	95	1	383	30	21	14	34	1.93
50336249--50336590	44	7.8	44	88	2	429	30	20	24	24	1.99
50338936--50338967	12	2.6	13	85	14	50	37	0	6	56	1.25
50341939--50341992	20	2.7	20	88	0	72	22	31	0	46	1.52
50342670--50342833	40	4.1	40	92	0	265	42	29	17	10	1.83
50343012--50343067	22	2.5	23	82	2	69	51	1	1	44	1.22
50343043--50343082	16	2.5	16	91	0	62	47	2	7	42	1.45
50343155--50343182	9	3.1	9	100	0	56	32	0	10	57	1.33
50343071--50343280	68	3.1	68	95	1	370	40	4	9	45	1.58
50343223--50343250	9	3.1	9	100	0	56	32	0	10	57	1.33
50343347--50343391	24	1.9	23	90	4	72	62	0	0	37	0.96
50344196--50344257	25	2.5	25	81	0	70	33	30	19	16	1.94
50347221--50347259	11	3.5	11	93	6	62	28	0	0	71	0.86
50355047--50355090	20	2.2	20	83	0	52	56	11	18	13	1.66
50367677--50367701	13	1.9	13	100	0	50	48	20	8	24	1.76
50370554--50370606	21	2.5	21	100	0	106	28	24	22	24	2.00
50370974--50371097	41	3.0	41	80	0	149	22	20	26	30	1.98
50374513--50374636	43	2.9	43	85	3	162	27	9	31	31	1.89
50374513--50374701	85	2.2	86	80	2	202	29	13	27	29	1.94
50374599--50374702	43	2.5	42	90	1	154	30	18	23	27	1.97
50375107--50375137	9	3.4	9	90	0	53	25	12	22	38	1.90
50375591--50375630	20	2.0	20	85	9	55	22	30	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50375737--50375775	9	4.4	9	96	3	71	33	0	0	66	0.92
50375737--50375797	18	3.5	17	81	16	72	34	1	3	60	1.23
50378056--50378102	22	2.0	23	88	8	69	38	0	6	55	1.26
50379602--50379634	18	1.9	17	88	11	50	15	12	6	66	1.42
50384454--50384496	18	2.4	18	92	0	68	25	25	6	41	1.80
50385645--50385686	20	2.1	20	95	0	75	35	19	11	33	1.88
50388035--50388559	124	4.2	125	87	3	662	28	16	16	38	1.90
50388035--50388559	249	2.1	253	84	4	668	28	16	16	38	1.90
50388624--50388754	34	3.9	34	81	9	144	45	12	1	39	1.52
50389330--50389365	18	2.0	18	88	0	54	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213