genome.fa.s14.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  125  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36183633--36183681	3	16.3	3	100	0	98	32	0	0	67	0.91
36186325--36186368	21	2.0	22	86	8	63	65	4	4	25	1.30
36189793--36189848	18	3.1	18	80	10	69	37	44	7	10	1.67
36190362--36190443	40	2.0	40	100	0	164	30	19	17	32	1.95
36198653--36198842	51	3.8	50	79	7	213	26	16	25	32	1.96
36198598--36198844	101	2.5	101	84	5	322	27	15	24	31	1.95
36198598--36198873	101	2.7	101	81	6	319	28	14	25	32	1.95
36207434--36207497	30	2.2	30	94	2	112	57	14	3	25	1.51
36207526--36207568	22	2.0	22	90	0	68	55	6	13	23	1.62
36208059--36208121	19	3.1	20	75	8	65	50	4	0	44	1.23
36208813--36208893	28	2.8	27	78	10	81	56	0	6	37	1.24
36210935--36210977	22	2.0	22	85	0	59	60	9	9	20	1.55
36210943--36210981	11	3.5	11	82	0	51	61	7	10	20	1.52
36215864--36215957	45	2.1	45	91	0	152	31	24	18	25	1.97
36215961--36216149	51	3.8	49	80	5	209	31	28	16	23	1.96
36215961--36216145	101	1.8	100	88	3	264	31	28	16	23	1.96
36219367--36219404	10	3.8	10	83	10	51	31	21	23	23	1.98
36220408--36220452	23	2.0	23	86	0	63	13	15	24	46	1.82
36221958--36222274	32	9.9	32	82	0	375	31	9	16	41	1.81
36221958--36222274	96	3.3	96	87	1	422	31	9	16	41	1.81
36222410--36222526	43	2.7	43	91	0	198	29	15	32	23	1.95
36226238--36226283	23	2.0	23	91	8	76	65	4	4	26	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36227884--36227986	43	2.4	44	78	3	109	26	24	23	26	2.00
36227986--36228292	132	2.3	132	91	0	488	24	26	18	30	1.98
36227986--36228292	44	7.0	44	89	0	443	24	26	18	30	1.98
36238797--36238875	37	2.1	37	88	4	115	25	30	18	25	1.98
36238994--36239534	47	11.5	47	93	0	875	29	29	8	32	1.87
36245298--36245343	23	2.0	23	91	8	76	65	4	4	26	1.30
36252614--36254044	781	1.8	778	91	1	2341	39	12	11	37	1.79
36254769--36254825	25	2.3	25	87	0	78	28	17	8	45	1.78
36261220--36261287	29	2.3	29	85	5	93	27	30	13	27	1.94
36261109--36261436	174	1.9	174	96	0	602	30	24	14	29	1.95
36261389--36261467	29	2.7	30	82	13	110	30	30	13	25	1.94
36278935--36279031	39	2.5	39	84	1	124	35	8	12	44	1.72
36278940--36279049	39	2.8	38	78	8	114	33	9	11	45	1.72
36280423--36280524	52	1.9	53	82	2	125	36	12	17	33	1.88
36285376--36285404	13	2.1	14	93	6	51	68	13	6	10	1.37
36291274--36291361	45	2.0	45	93	0	149	26	18	22	32	1.97
36295742--36295766	13	1.9	13	100	0	50	48	12	16	24	1.79
36298886--36298913	3	9.3	3	100	0	56	67	0	32	0	0.91
36301083--36301109	14	1.9	14	100	0	54	37	22	25	14	1.93
36304642--36304669	13	2.2	13	100	0	56	0	14	0	85	0.59
36306254--36306368	54	2.1	54	93	3	196	29	10	16	43	1.81
36310352--36310535	79	2.3	80	82	10	218	25	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36310352--36310535	39	4.7	40	82	7	216	25	22	27	25	2.00
36310405--36310568	79	2.1	77	82	10	190	26	20	27	25	1.99
36319321--36319498	27	6.6	27	79	3	151	27	29	16	26	1.97
36319342--36319497	82	1.9	81	84	3	206	26	29	16	26	1.97
36326582--36326759	27	6.6	27	79	3	151	27	29	16	26	1.97
36326603--36326758	82	1.9	81	84	3	206	26	29	16	26	1.97
36328034--36328218	79	2.3	81	83	7	227	24	22	27	24	2.00
36328035--36328218	40	4.6	40	82	9	207	25	22	27	24	2.00
36328081--36328251	79	2.2	79	81	8	197	26	21	26	25	1.99
36342108--36342146	15	2.7	15	88	4	53	20	38	0	41	1.53
36343270--36343316	23	2.1	23	84	7	62	51	12	4	31	1.59
36348653--36348694	17	2.6	16	92	3	66	16	7	4	71	1.26
36348738--36348781	11	4.0	11	100	0	88	18	0	9	72	1.10
36349751--36349797	23	2.1	23	84	7	62	51	12	4	31	1.59
36357037--36357772	368	2.0	368	94	1	1305	32	20	22	24	1.98
36364507--36364558	18	2.9	17	83	13	61	78	1	15	3	0.98
36364523--36364565	11	3.9	11	79	11	52	79	2	16	2	0.95
36364507--36364569	12	5.5	11	73	16	56	77	1	17	3	0.97
36364507--36364569	22	2.7	22	76	13	65	77	1	17	3	0.97
36366366--36366517	27	5.6	27	88	5	216	30	29	13	26	1.94
36366365--36366517	55	2.8	54	88	3	225	30	30	13	26	1.94
36366366--36366517	82	1.9	82	90	2	243	30	29	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36370623--36370800	27	6.6	27	83	3	205	26	15	28	29	1.96
36370624--36370779	82	1.9	81	88	3	233	26	15	28	29	1.96
36370620--36370800	82	2.2	81	83	2	229	27	15	27	29	1.96
36391252--36391832	47	12.2	47	90	2	883	31	8	29	29	1.87
36391252--36391832	96	6.1	96	94	0	945	31	8	29	29	1.87
36404384--36404413	15	2.0	15	93	0	51	33	10	6	50	1.62
36405836--36405936	42	2.4	42	85	4	134	38	16	12	31	1.87
36406158--36406192	17	2.1	17	88	0	52	42	8	0	48	1.33
36407979--36408025	23	2.0	23	95	0	85	48	19	8	23	1.75
36408323--36408416	46	2.0	46	100	0	188	23	19	22	35	1.96
36408761--36408889	61	2.1	60	91	7	206	44	9	14	31	1.77
36411408--36411451	23	1.9	23	95	0	79	38	27	15	18	1.91
36411683--36411729	23	2.0	23	95	0	85	55	14	8	21	1.66
36412025--36412118	46	2.0	46	91	0	152	23	17	22	37	1.94
36414362--36414413	11	4.6	11	90	4	77	75	3	1	19	1.06
36415354--36415401	6	7.5	6	82	13	60	77	0	22	0	0.78
36415354--36415394	21	2.0	21	95	0	73	75	0	24	0	0.80
36415387--36415431	18	2.5	18	81	0	54	62	2	24	11	1.40
36415479--36415552	35	2.2	34	79	13	82	62	1	27	9	1.34
36418712--36418771	11	4.9	12	78	15	61	70	8	3	18	1.27
36419709--36419756	6	7.5	6	86	13	69	79	0	20	0	0.74
36419709--36419749	21	2.0	21	100	0	82	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36419834--36419907	35	2.2	34	79	13	82	62	1	27	9	1.34
36425100--36425395	39	7.4	39	80	8	297	33	18	13	35	1.89
36425147--36425318	87	2.0	86	88	1	254	32	18	13	35	1.90
36427408--36427448	14	2.9	15	79	17	52	48	9	0	41	1.36
36427444--36427576	65	2.0	66	98	1	259	34	18	6	41	1.75
36432694--36432967	137	2.0	138	92	2	462	41	4	19	34	1.71
36438033--36438251	40	5.5	39	81	8	190	24	21	28	25	1.99
36438113--36438290	79	2.2	80	80	2	189	25	21	28	24	1.99
36451294--36451337	23	1.9	22	82	17	54	36	25	0	38	1.56
36451382--36451470	45	2.0	45	93	0	151	33	23	17	24	1.96
36451477--36451667	51	3.8	50	77	4	213	31	27	16	24	1.97
36451468--36451663	102	1.9	99	87	7	277	30	25	17	26	1.98
36454198--36454439	50	4.8	50	84	5	272	24	29	20	25	1.99
36460896--36461080	79	2.3	81	83	7	227	24	22	27	24	2.00
36460897--36461080	40	4.6	40	82	9	207	25	22	27	24	2.00
36460949--36461113	79	2.1	79	83	6	201	26	21	27	24	1.99
36465477--36465515	20	2.0	20	90	10	62	56	5	23	15	1.59
36470899--36470975	38	2.0	38	100	0	154	29	10	25	33	1.89
36474238--36474279	14	3.1	14	79	6	50	42	26	2	28	1.67
36474462--36474582	48	2.5	48	84	6	140	40	23	15	20	1.91
36475940--36475964	13	1.9	13	100	0	50	12	0	56	32	1.36
36477319--36477387	29	2.4	29	85	4	86	20	21	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36481931--36482003	22	3.1	22	70	21	67	35	24	17	21	1.95
36481931--36482021	48	1.9	47	88	6	139	38	25	15	20	1.92
36487091--36487136	22	2.1	21	84	11	58	43	0	0	56	0.99
36503193--36503238	19	2.3	20	72	24	51	58	0	8	32	1.28
36504980--36505023	20	2.2	21	80	12	56	25	20	18	36	1.95
36504989--36505034	20	2.3	20	96	0	83	19	21	19	39	1.93
36507729--36507766	18	2.2	18	85	4	51	57	7	26	7	1.54
36509646--36509890	120	2.1	118	85	6	325	27	20	25	25	1.99
36509593--36509857	40	6.7	40	83	6	315	26	21	26	26	1.99
36529313--36529524	40	5.3	39	81	8	207	26	20	25	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213