genome.fa.s14.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  171  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51357293--51357665	44	8.0	44	69	16	225	32	19	21	26	1.97
51357767--51358924	50	23.1	50	67	9	406	32	22	20	24	1.98
51357767--51359008	100	12.4	100	82	2	1364	32	22	20	24	1.98
51360565--51360595	16	1.9	16	93	0	53	41	9	0	48	1.36
51391210--51391250	2	20.5	2	94	0	73	0	51	0	48	1.00
51391303--51391336	11	2.8	12	91	8	52	29	29	0	41	1.57
51400143--51400325	50	3.6	50	90	0	267	31	24	10	34	1.89
51410873--51410918	24	1.9	24	86	0	65	45	17	26	10	1.81
51412090--51412136	20	2.3	20	85	0	67	29	36	12	21	1.91
51419977--51420119	40	3.6	40	79	8	148	37	23	19	20	1.95
51420155--51420307	41	3.7	41	92	3	256	20	21	28	28	1.98
51421035--51421064	15	2.0	15	93	0	51	20	0	50	30	1.49
51421416--51421466	13	3.6	14	81	7	59	60	0	0	39	0.97
51425548--51425642	43	2.2	43	90	0	145	33	11	9	45	1.73
51425919--51426101	43	4.3	43	84	2	226	23	15	32	28	1.95
51425955--51426124	86	2.0	86	83	4	218	25	15	30	28	1.96
51426266--51426553	45	6.6	45	71	13	185	29	18	25	26	1.98
51426266--51426635	44	8.5	43	71	11	175	29	19	23	27	1.98
51427289--51427334	21	2.0	24	88	12	71	23	8	0	67	1.18
51434459--51434575	43	2.8	43	80	5	123	17	15	11	55	1.68
51440116--51440229	59	1.9	59	90	0	183	30	11	10	47	1.73
51441674--51441860	25	7.5	25	78	3	144	26	16	21	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51441681--51441850	50	3.4	50	78	4	164	26	15	22	35	1.94
51441899--51442001	25	4.2	24	79	2	71	29	20	23	27	1.99
51458025--51458089	32	2.0	32	100	0	130	38	21	15	24	1.92
51463105--51463203	41	2.4	41	81	0	108	38	19	15	27	1.91
51473044--51473096	21	2.5	21	90	0	79	33	15	45	5	1.69
51473538--51473664	43	3.0	43	83	1	130	33	16	17	32	1.92
51478491--51478546	24	2.3	24	84	0	67	28	35	14	21	1.92
51484658--51484715	28	2.1	28	100	0	116	27	15	13	43	1.85
51486036--51486092	27	2.2	26	87	3	78	40	29	7	22	1.80
51486129--51486177	20	2.5	19	84	15	64	28	4	30	36	1.76
51488601--51488635	17	2.1	17	100	0	70	42	11	22	22	1.85
51495106--51495182	26	3.0	26	86	0	109	19	18	23	38	1.93
51497956--51498086	27	4.9	27	79	0	136	32	14	21	32	1.93
51497956--51498086	54	2.4	54	77	0	154	32	14	21	32	1.93
51501383--51501452	30	2.3	30	82	0	86	40	15	27	17	1.90
51501433--51501571	30	4.6	30	73	8	104	38	11	22	27	1.88
51501437--51501663	60	3.8	61	77	7	198	37	13	22	25	1.91
51501557--51501658	30	3.4	30	83	4	127	37	14	27	20	1.92
51501353--51501658	90	3.4	89	72	8	255	37	14	23	23	1.92
51512033--51512110	41	1.9	41	86	5	113	16	16	32	34	1.92
51512099--51512233	38	3.5	38	75	4	128	19	25	25	29	1.98
51512094--51512236	77	1.9	77	85	2	198	18	25	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51515783--51515853	27	2.6	27	90	0	106	42	21	12	23	1.87
51516372--51516447	35	2.1	36	83	7	93	36	21	9	32	1.85
51520628--51520663	13	2.8	13	86	0	54	30	27	0	41	1.56
51536604--51536670	34	2.0	34	87	0	98	35	29	10	23	1.89
51542263--51542295	17	2.0	17	94	5	59	0	12	0	87	0.53
51552381--51552470	25	3.6	25	74	14	71	34	20	22	23	1.97
51555255--51555403	23	6.5	23	80	0	154	41	20	16	21	1.90
51557142--51557174	16	2.1	16	94	0	57	33	30	9	27	1.88
51560043--51560085	18	2.5	17	81	7	50	27	2	11	58	1.46
51567422--51567453	4	8.0	4	100	0	64	75	0	25	0	0.81
51575368--51575404	19	2.0	20	89	10	60	64	5	0	29	1.15
51575378--51575438	30	2.1	28	87	6	86	68	3	0	27	1.05
51575509--51575546	18	2.2	17	86	13	51	81	0	2	15	0.80
51579639--51579676	14	2.7	14	95	0	67	28	21	5	44	1.73
51598600--51598628	7	4.1	7	100	0	58	27	0	13	58	1.36
51600818--51600866	25	1.9	26	87	4	73	63	0	2	34	1.06
51601004--51601037	14	2.4	14	90	5	50	20	2	2	73	1.09
51601004--51601054	15	3.4	14	84	13	57	23	1	1	72	1.05
51601014--51601055	17	2.7	16	89	10	61	23	0	0	76	0.79
51604515--51604596	34	2.4	34	81	4	103	45	1	14	39	1.53
51605596--51605728	70	1.9	70	84	4	182	31	14	13	40	1.84
51619857--51619904	20	2.4	20	82	0	60	27	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51621490--51621527	10	3.7	10	93	6	67	76	7	0	15	1.01
51621490--51621527	11	3.5	11	96	3	69	76	7	0	15	1.01
51622606--51622712	36	2.9	36	88	4	153	56	0	28	14	1.46
51622705--51622762	18	3.2	18	87	0	80	65	5	18	10	1.41
51622726--51622805	29	2.7	29	77	9	90	61	2	25	11	1.42
51628371--51628401	16	1.9	16	93	0	53	70	0	0	29	0.87
51630384--51630429	23	2.0	23	100	0	92	56	26	4	13	1.55
51636579--51636646	16	4.2	16	98	0	127	38	35	0	26	1.57
51648844--51648877	6	5.7	6	85	0	50	61	0	0	38	0.96
51655260--51655500	38	6.3	38	86	0	347	16	17	28	37	1.92
51655303--51655405	16	5.7	16	67	24	62	16	20	30	33	1.95
51655260--51655495	76	3.1	76	91	0	382	16	17	28	37	1.92
51655281--51655392	22	5.7	20	68	25	78	15	19	29	35	1.92
51655260--51655500	114	2.1	114	91	0	383	16	17	28	37	1.92
51656413--51656437	13	1.9	13	100	0	50	32	8	24	36	1.84
51662086--51662229	43	3.4	42	75	8	130	29	24	15	29	1.96
51668175--51668244	34	2.1	34	100	0	140	47	8	8	35	1.65
51670070--51670142	16	4.2	17	74	10	60	43	0	1	54	1.08
51670085--51670142	16	3.6	16	80	2	62	41	0	1	56	1.09
51674511--51674704	41	4.8	40	73	15	148	22	15	25	36	1.94
51675468--51675565	29	3.3	29	80	5	81	22	1	44	31	1.60
51675485--51675587	22	4.6	22	79	2	125	21	0	45	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51675486--51675587	7	13.9	7	72	10	78	21	0	46	31	1.58
51675493--51675565	15	4.9	15	78	6	85	23	1	43	31	1.62
51676085--51676130	22	2.1	21	84	11	58	78	0	4	17	0.91
51677768--51677808	13	2.8	15	85	14	59	46	19	0	34	1.50
51677927--51678043	9	13.6	9	72	15	95	47	21	0	29	1.56
51677927--51678071	52	2.8	51	81	8	141	47	19	2	31	1.61
51677732--51678017	16	17.4	16	68	21	123	46	17	1	33	1.59
51683605--51683661	21	2.7	21	97	0	105	42	22	31	3	1.71
51684152--51684416	42	6.2	42	85	2	332	24	21	21	32	1.98
51684152--51684416	127	2.1	129	86	5	376	24	21	21	32	1.98
51684152--51684402	85	3.0	84	83	1	322	25	21	20	32	1.97
51689355--51689453	50	2.0	48	84	7	128	23	23	14	39	1.91
51709708--51709762	12	4.3	13	80	8	51	81	3	5	9	0.95
51711919--51712299	128	3.0	128	90	0	584	30	18	24	26	1.98
51712325--51712877	44	12.8	44	74	7	361	31	19	21	27	1.97
51712291--51712969	211	3.2	212	89	3	1063	33	18	20	27	1.96
51712325--51712980	219	3.0	219	91	2	1067	32	18	20	28	1.96
51713023--51713186	50	3.3	49	76	7	186	33	23	17	26	1.96
51712974--51713219	100	2.5	100	93	0	402	33	21	20	23	1.97
51713050--51713213	50	3.3	50	79	0	211	35	21	20	21	1.96
51713226--51713384	50	3.2	50	73	7	169	30	25	21	23	1.99
51713099--51713336	123	1.9	123	86	1	334	32	24	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51715088--51715145	4	14.5	4	92	0	98	50	20	0	29	1.49
51720689--51720718	15	2.0	15	100	0	60	26	20	13	40	1.89
51741757--51741787	9	3.3	9	95	4	53	58	0	0	41	0.98
51741965--51742017	25	2.1	25	92	0	88	22	15	30	32	1.94
51753864--51753919	25	2.3	25	81	3	69	26	0	7	66	1.18
51753864--51753928	24	2.8	24	77	11	64	29	0	6	64	1.17
51753898--51753960	28	2.3	29	78	10	69	31	3	6	58	1.39
51764412--51764476	34	1.9	34	90	6	105	24	32	27	15	1.95
51765541--51765695	73	2.1	73	84	4	197	34	21	24	19	1.96
51769110--51769134	12	2.1	12	100	0	50	32	16	20	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213