genome.fa.s14.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  56  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15242478--15242546	32	2.2	32	97	0	129	40	17	2	39	1.64
15253785--15253831	20	2.3	20	85	0	67	21	12	36	29	1.91
15254973--15255080	51	2.1	53	89	3	166	38	13	14	32	1.86
15256064--15256150	37	2.4	37	84	3	113	39	17	22	20	1.92
15256359--15256409	22	2.3	23	83	6	70	56	13	0	29	1.38
15256425--15256460	15	2.4	15	90	0	54	47	2	2	47	1.31
15256381--15256458	36	2.2	36	83	2	95	51	10	1	37	1.44
15257853--15257978	58	2.2	58	88	2	182	53	3	0	43	1.16
15257840--15258005	58	2.9	56	83	9	169	53	3	1	42	1.24
15257853--15258014	57	2.8	57	83	10	154	54	3	0	41	1.23
15261901--15261996	47	2.0	47	93	0	165	46	8	5	39	1.56
15273561--15273612	22	2.3	23	83	3	70	57	13	0	28	1.36
15273583--15273662	37	2.2	37	81	2	90	51	10	1	37	1.44
15275023--15275144	57	2.1	57	88	5	176	52	3	0	44	1.17
15279070--15279165	47	2.0	47	93	0	165	46	8	5	39	1.56
15281267--15281317	25	2.0	25	100	0	102	49	19	7	23	1.74
15282394--15282437	21	2.1	21	95	0	79	34	9	11	45	1.72
15284379--15284416	18	2.2	18	90	9	62	71	0	5	23	1.07
15288699--15288736	20	1.9	20	89	10	60	63	10	15	10	1.52
15289080--15289109	3	10.0	3	100	0	60	66	0	0	33	0.92
15295958--15296021	17	3.6	17	72	15	58	26	14	14	45	1.82
15295950--15296020	36	2.0	36	94	0	124	25	14	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15295950--15296003	17	3.0	18	71	17	58	24	14	16	44	1.85
15300572--15300596	13	1.9	13	100	0	50	8	0	24	68	1.16
15301572--15301904	114	2.9	114	92	1	551	40	3	13	41	1.62
15302055--15302085	15	2.1	15	100	0	62	32	6	25	35	1.82
15302403--15302511	41	2.7	40	91	5	173	27	17	30	24	1.97
15303845--15303915	36	2.0	36	91	0	115	26	14	14	45	1.82
15304869--15304939	37	1.9	37	82	5	90	42	14	1	42	1.54
15305373--15305422	24	2.0	25	84	7	66	44	24	0	32	1.54
15307321--15307357	16	2.3	17	86	13	60	62	0	0	37	0.96
15314719--15314942	9	24.3	9	75	4	196	31	2	16	48	1.61
15314719--15314918	27	7.3	27	84	4	231	31	1	17	50	1.55
15315147--15315184	16	2.4	16	91	4	60	52	5	0	42	1.24
15315181--15315208	13	2.2	13	100	0	56	46	7	7	39	1.59
15315177--15315226	17	3.2	17	81	18	72	52	6	6	36	1.51
15316208--15316262	30	1.9	29	82	10	69	58	9	3	29	1.46
15318689--15318737	15	3.3	15	76	23	59	36	46	2	14	1.56
15318692--15318761	15	5.0	14	72	20	58	37	44	1	17	1.57
15318692--15318761	28	2.5	28	84	11	90	37	44	1	17	1.57
15318922--15318984	7	8.9	7	81	11	58	33	50	0	15	1.45
15318925--15318983	14	4.2	14	78	8	66	32	50	0	16	1.46
15318901--15319014	42	2.7	42	79	2	131	41	39	0	19	1.51
15319666--15319951	114	2.5	114	78	8	287	33	23	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15320836--15321017	87	2.1	87	97	0	346	27	10	14	47	1.77
15323613--15323652	16	2.5	16	83	0	53	82	2	12	2	0.87
15323613--15323653	21	2.0	21	85	0	55	80	2	12	4	0.97
15324582--15324624	3	14.3	3	80	9	52	39	0	0	60	0.97
15324582--15324625	15	2.9	15	83	10	63	40	0	0	59	0.98
15324769--15324841	26	2.7	28	80	4	87	35	4	5	54	1.42
15324921--15324969	13	3.7	13	83	2	53	24	4	2	69	1.17
15324942--15324988	4	12.5	4	78	13	55	25	0	2	72	0.96
15324940--15324989	16	3.0	17	82	11	68	26	0	4	70	1.05
15325134--15325195	29	2.2	28	82	2	79	27	11	14	46	1.78
15325413--15325693	125	2.3	124	88	6	408	29	16	22	32	1.95
15326974--15327737	29	25.9	29	85	5	996	33	1	21	43	1.60
15327374--15327398	5	5.0	5	100	0	50	60	0	0	40	0.97
15328900--15328938	7	5.6	7	100	0	78	58	12	0	28	1.34
15329896--15329928	15	2.3	15	89	5	50	66	6	0	27	1.15
15330027--15330082	29	2.0	29	89	10	89	58	1	0	39	1.08
15330115--15330167	22	2.4	21	87	9	79	32	0	32	35	1.58
15330120--15330219	52	1.9	52	89	0	155	37	0	32	31	1.58
15330172--15330227	22	2.5	22	97	2	103	41	0	30	28	1.57
15334096--15334148	16	3.2	17	71	10	56	52	1	0	45	1.11
15334072--15334154	32	2.4	35	86	11	109	48	2	1	48	1.22
15337747--15337870	41	3.0	40	90	4	169	25	20	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15337760--15337885	41	3.1	41	89	0	180	28	19	29	22	1.98
15350578--15350649	35	2.1	35	100	0	144	26	20	25	27	1.99
15351006--15351046	21	1.9	22	90	5	66	65	14	7	12	1.45
15360248--15360281	7	4.9	7	100	0	68	44	0	41	14	1.45
15363273--15363302	15	2.0	15	93	0	51	33	30	3	33	1.74
15364713--15364817	49	2.1	49	92	0	174	32	6	9	51	1.60
15370398--15370465	24	2.8	24	81	0	73	50	0	32	17	1.47
15370650--15370731	39	2.1	40	93	2	139	47	8	20	23	1.77
15382592--15382631	20	2.1	19	85	4	53	55	0	2	42	1.13
15384054--15384083	15	2.0	15	100	0	60	60	6	0	33	1.23
15384225--15384260	14	2.6	14	100	0	72	72	5	0	22	1.05
15385882--15387119	44	28.2	44	64	12	315	26	24	19	29	1.98
15385895--15386532	133	4.8	133	87	2	887	26	24	19	29	1.98
15386431--15386619	87	2.2	87	85	1	254	26	25	19	28	1.99
15386518--15387117	131	4.6	131	88	0	858	26	25	19	28	1.98
15386298--15386743	219	2.0	220	87	1	635	27	25	19	28	1.99
15387607--15387820	108	2.0	108	86	0	302	50	10	14	25	1.74
15397824--15397877	1	54.0	1	77	0	54	1	5	3	88	0.67
15397823--15397878	11	5.1	11	84	6	60	5	5	3	85	0.81
15402852--15402881	15	2.0	15	93	0	51	56	6	3	33	1.42
15413466--15413512	17	2.7	17	83	9	51	61	6	0	31	1.21
15413723--15413767	16	2.6	17	76	13	56	66	2	2	28	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15413723--15413772	18	2.9	17	77	14	57	64	4	2	30	1.23
15422398--15422423	5	5.2	5	100	0	52	57	0	42	0	0.98
15427804--15427833	6	5.0	6	100	0	60	33	0	16	50	1.46
15437563--15438042	240	2.0	240	100	0	960	27	21	15	35	1.93
15444199--15444261	20	3.3	19	78	15	67	55	6	0	38	1.25
15448730--15448834	48	2.2	48	100	0	210	49	29	9	11	1.70
15450913--15450943	12	2.6	12	100	0	62	35	16	9	38	1.81
15452202--15452232	11	2.8	11	95	0	53	19	35	25	19	1.95
15454308--15454947	320	2.0	320	94	0	1109	30	18	6	44	1.75
15455160--15455222	25	2.5	25	78	0	63	22	22	17	38	1.93
15455184--15455279	25	3.9	24	76	10	95	20	22	16	39	1.92
15455309--15455382	25	3.0	25	78	4	78	25	27	17	29	1.97
15455334--15455390	25	2.3	25	81	0	69	31	24	15	28	1.96
15457346--15457455	50	2.2	51	85	3	150	25	20	7	47	1.75
15469896--15469931	17	2.1	17	89	0	54	30	2	5	61	1.33
15469962--15470003	18	2.3	18	95	0	75	40	4	2	52	1.35
15477171--15477223	21	2.5	21	84	0	70	33	37	7	20	1.81
15477593--15477628	16	2.2	16	90	0	54	11	61	0	27	1.30
15483230--15483277	24	2.0	24	100	0	96	29	33	4	33	1.77
15486158--15486197	3	13.3	3	94	0	71	30	32	2	35	1.71
15491725--15491792	35	1.9	35	87	0	100	25	17	7	50	1.72
15492412--15492657	121	2.0	121	98	0	474	33	23	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15493955--15494340	193	2.0	193	100	0	772	34	16	13	35	1.88
15494977--15495084	35	3.2	35	65	21	102	43	19	6	30	1.76
15494961--15495095	67	2.0	67	100	0	270	43	20	5	29	1.75
15495265--15495304	21	1.9	21	89	0	62	42	20	10	27	1.83
15509125--15509172	18	2.7	18	100	0	96	43	6	6	43	1.54
15517871--15517912	15	2.7	16	82	14	52	45	0	2	52	1.13
15517862--15517903	15	2.9	15	82	10	52	47	0	0	52	1.00
15518126--15518195	16	4.4	16	92	0	95	31	35	0	32	1.58
15518819--15518881	25	2.4	28	72	20	73	31	0	3	65	1.09
15518827--15518881	21	2.5	22	77	16	60	30	0	3	65	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213