genome.fa.s14.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  205  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61330852--61330940	18	4.9	18	83	0	106	34	14	21	29	1.93
61330852--61330940	36	2.5	36	88	0	133	34	14	21	29	1.93
61334714--61334745	14	2.3	14	100	0	64	46	12	0	40	1.42
61334726--61334768	20	2.2	20	91	0	68	48	6	2	41	1.43
61336962--61337420	44	10.5	44	71	13	209	30	18	16	34	1.93
61337030--61337105	37	2.1	37	82	0	89	31	17	15	35	1.91
61337080--61337289	44	4.7	45	82	5	248	30	18	15	35	1.92
61337080--61337289	89	2.4	89	89	0	303	30	18	15	35	1.92
61348996--61349066	17	4.2	17	81	15	67	46	8	1	43	1.42
61349008--61349066	20	3.1	19	88	7	77	47	6	1	44	1.39
61348996--61349027	14	2.3	14	100	0	64	46	12	0	40	1.42
61350775--61350899	62	2.0	62	100	0	250	24	4	14	56	1.58
61355107--61355619	94	5.5	94	81	6	510	32	19	20	27	1.97
61355262--61355412	44	3.3	44	69	20	137	31	17	23	27	1.97
61355957--61355990	16	2.1	16	88	5	50	82	8	0	8	0.85
61357385--61357442	15	3.8	14	76	14	53	17	3	1	77	0.99
61357398--61357441	20	2.2	20	88	8	63	15	4	2	77	1.04
61357540--61357580	3	13.7	3	100	0	82	34	0	0	65	0.93
61361382--61361420	16	2.4	16	91	0	60	53	2	7	35	1.43
61370249--61370286	12	3.2	12	82	17	53	28	23	7	39	1.83
61370436--61370467	16	2.0	17	88	11	50	34	34	6	25	1.81
61378218--61378279	12	5.2	12	83	16	85	29	22	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61378217--61378279	24	2.7	24	97	2	119	30	22	6	41	1.78
61385393--61385445	27	2.0	27	96	0	97	26	32	24	16	1.97
61385362--61385626	103	2.6	104	91	0	415	29	30	20	19	1.97
61385954--61386018	30	2.2	29	81	8	76	30	27	6	35	1.81
61385961--61386018	30	1.9	30	85	0	80	31	24	6	37	1.82
61388204--61388455	128	2.0	128	91	0	414	25	20	21	32	1.97
61388341--61388504	85	1.9	85	91	0	265	27	19	21	31	1.98
61388217--61388496	40	6.7	40	68	13	141	26	20	22	31	1.98
61388518--61389078	100	5.6	100	87	0	773	25	20	21	31	1.98
61388738--61388999	50	5.2	50	66	9	165	26	20	21	31	1.98
61389374--61389427	24	2.2	24	83	0	63	27	18	16	37	1.93
61390335--61390370	15	2.4	15	90	0	54	0	11	2	86	0.68
61399901--61399979	38	2.1	38	85	4	106	17	15	43	24	1.87
61400598--61400637	13	3.1	13	77	0	53	32	0	0	67	0.91
61401513--61401544	14	2.4	13	90	10	55	46	0	3	50	1.17
61401853--61401918	30	2.1	33	86	8	93	54	1	3	40	1.25
61404202--61404238	9	4.1	9	92	0	65	45	13	10	29	1.77
61404455--61404514	30	2.0	31	83	9	79	20	38	0	41	1.52
61410629--61411115	250	1.9	251	85	4	662	34	19	20	25	1.96
61412539--61412585	3	15.7	3	86	8	60	40	0	0	59	0.97
61427180--61427951	175	4.4	175	92	1	1287	33	18	19	28	1.95
61427845--61428010	90	1.8	90	82	5	210	36	18	21	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61427988--61428612	50	12.5	50	69	1	417	33	22	19	24	1.97
61427973--61428612	100	6.4	100	93	0	1066	33	23	19	24	1.97
61432349--61432387	19	2.0	20	85	9	55	10	7	5	76	1.13
61438090--61438120	15	2.1	15	93	0	53	29	16	0	54	1.42
61440112--61440416	50	5.8	50	78	8	234	20	28	22	29	1.98
61440112--61440416	56	5.8	52	79	9	282	20	28	22	29	1.98
61440112--61440416	106	2.9	100	79	9	288	20	28	22	29	1.98
61446489--61446530	20	2.1	20	82	8	50	83	2	4	9	0.88
61452704--61452738	18	1.9	18	88	0	52	45	0	48	5	1.26
61454062--61454122	25	2.5	24	84	7	79	21	44	27	6	1.77
61454161--61454190	12	2.6	11	90	10	51	90	0	10	0	0.47
61458533--61458570	20	1.9	20	84	10	51	28	7	0	63	1.23
61468123--61468188	23	2.9	23	100	0	132	33	30	22	13	1.93
61475190--61475267	35	2.2	35	97	0	147	35	32	14	17	1.90
61476669--61476713	3	15.0	3	90	0	72	33	4	0	62	1.15
61476817--61476851	14	2.5	14	90	0	52	34	8	0	57	1.29
61488909--61488970	24	2.6	24	86	0	79	40	8	22	29	1.82
61489284--61489774	45	10.9	45	85	0	660	29	16	23	30	1.97
61489719--61489916	88	2.2	88	88	1	290	29	20	24	25	1.99
61490059--61490201	51	2.8	51	78	4	171	30	17	23	27	1.97
61490260--61490519	45	5.9	44	69	12	174	33	19	21	26	1.97
61492075--61492170	3	31.7	3	77	10	70	33	7	2	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61492460--61492549	18	5.0	19	67	15	57	36	8	0	54	1.32
61495098--61495141	14	2.8	16	86	10	56	63	4	2	29	1.26
61496424--61496482	29	2.0	30	84	12	79	38	6	3	50	1.45
61496778--61496838	28	2.3	26	80	5	68	32	9	1	55	1.42
61504268--61504321	27	2.0	28	85	3	74	51	1	0	46	1.11
61514447--61514482	18	2.0	18	100	0	72	50	0	11	38	1.38
61518166--61518215	26	1.9	26	83	0	64	36	8	20	36	1.82
61525715--61525751	9	4.1	9	89	0	56	32	8	13	45	1.73
61528797--61528857	20	3.0	20	72	15	63	37	3	1	57	1.25
61542293--61542340	18	2.7	18	73	0	51	62	4	0	33	1.14
61543407--61543483	38	1.9	38	87	7	109	35	2	6	55	1.39
61557833--61557898	34	1.9	34	87	0	96	37	15	18	28	1.91
61559796--61559841	20	2.3	20	84	0	56	45	6	2	45	1.41
61561537--61561592	30	1.9	29	82	13	71	28	7	16	48	1.72
61561547--61561603	30	1.9	30	86	10	82	28	7	14	50	1.68
61561728--61561789	31	1.9	33	83	9	83	43	3	9	43	1.53
61561884--61561996	54	2.1	54	100	0	226	56	16	8	17	1.65
61564957--61564990	16	2.1	16	88	0	50	50	14	17	17	1.79
61567790--61567830	21	2.0	21	90	0	64	29	21	29	19	1.98
61569735--61569768	16	2.1	16	88	0	50	50	14	17	17	1.79
61573712--61573775	31	2.1	31	93	0	110	31	18	7	42	1.79
61573834--61573865	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61583573--61583631	3	19.7	3	100	0	118	67	0	0	32	0.91
61593536--61593605	28	2.5	28	88	4	97	31	10	31	27	1.89
61606407--61606439	12	2.8	12	95	0	57	27	0	15	57	1.38
61606503--61606582	41	2.0	41	94	0	142	32	5	13	48	1.64
61610266--61610314	24	2.0	24	100	0	98	26	16	4	53	1.61
61625705--61625737	16	2.1	16	88	5	50	66	0	3	30	1.06
61634674--61634715	20	2.1	20	82	8	50	23	9	9	57	1.60
61635129--61635186	20	3.0	19	85	9	73	51	1	1	44	1.21
61635618--61635657	10	3.8	11	87	9	57	20	0	0	80	0.72
61638030--61638072	4	10.5	4	85	5	50	18	0	27	53	1.45
61638195--61638265	4	17.8	4	85	0	97	26	4	22	46	1.70
61643015--61643044	14	2.1	14	100	0	60	40	13	23	23	1.90
61644836--61645143	43	7.3	42	68	12	146	41	18	16	22	1.90
61644915--61645142	42	5.4	42	71	8	185	42	18	16	23	1.89
61644914--61645158	85	2.9	84	76	8	253	42	18	16	22	1.89
61651104--61651166	30	2.3	25	75	21	63	26	14	3	55	1.54
61653022--61653072	20	2.5	21	78	6	61	58	11	0	29	1.33
61653541--61653588	21	2.3	21	79	10	55	29	4	0	66	1.10
61654341--61654387	23	2.0	23	87	0	67	65	4	6	23	1.33
61654743--61654782	20	2.0	20	90	0	62	27	10	12	50	1.72
61654728--61654794	34	1.9	35	87	3	100	32	8	11	46	1.72
61655320--61655541	111	2.0	111	100	0	444	39	15	11	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61658870--61658991	57	2.1	55	82	8	138	39	8	14	37	1.76
61659263--61659305	2	21.5	2	100	0	86	0	48	0	51	1.00
61660142--61660193	15	3.5	15	78	0	59	42	0	46	11	1.40
61660133--61660179	24	2.0	24	87	8	69	40	0	48	10	1.38
61660132--61660206	30	2.5	30	86	0	105	46	0	45	8	1.32
61669932--61669957	2	13.0	2	100	0	52	50	50	0	0	1.00
61674385--61674426	17	2.4	17	88	4	57	40	38	0	21	1.53
61674416--61674512	39	2.5	39	89	1	151	46	29	3	20	1.66
61674523--61674585	17	3.5	17	69	12	54	34	3	12	49	1.57
61674520--61674594	37	2.0	37	92	0	123	36	4	13	46	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213