genome.fa.s14.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  182  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54813120--54813156	19	2.0	19	89	5	58	78	0	21	0	0.75
54814605--54814655	12	4.2	12	73	14	50	49	0	0	50	1.00
54814611--54814696	26	3.3	26	78	13	88	52	2	1	44	1.21
54815111--54815220	57	1.9	57	94	0	193	25	13	11	49	1.76
54818738--54818775	20	1.9	20	94	0	67	42	13	2	42	1.57
54820262--54820365	42	2.5	42	87	3	140	17	20	16	46	1.85
54820262--54820387	21	6.2	21	79	1	116	15	20	17	46	1.85
54825901--54825967	16	4.2	16	88	0	89	31	22	1	44	1.62
54826799--54826853	28	1.9	29	82	10	69	36	7	7	49	1.58
54826799--54826853	29	1.9	28	82	10	67	36	7	7	49	1.58
54834601--54834632	13	2.5	13	100	0	64	28	18	15	37	1.92
54838238--54838366	69	1.9	69	90	0	204	48	7	13	30	1.71
54838758--54838803	18	2.7	17	80	9	58	56	0	13	30	1.37
54843461--54843495	17	2.1	17	88	0	52	40	0	2	57	1.14
54848917--54848980	31	2.1	31	83	13	80	57	1	15	25	1.47
54849911--54849979	24	2.8	26	73	10	72	15	26	18	39	1.91
54849884--54849988	49	2.1	49	80	5	122	15	23	20	40	1.91
54850069--54850133	25	2.6	25	80	4	78	27	26	18	27	1.98
54858456--54858578	50	2.5	50	81	6	126	20	22	17	39	1.93
54865220--54865244	7	3.6	7	100	0	50	84	0	0	16	0.63
54865185--54865243	27	2.3	25	82	5	73	69	0	5	25	1.09
54870390--54870974	132	4.4	132	80	2	620	33	14	14	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54870456--54870953	263	1.9	265	86	2	707	33	14	14	37	1.86
54874288--54874327	20	2.0	20	90	0	62	27	10	12	50	1.72
54874273--54874339	34	1.9	35	84	3	91	34	8	10	46	1.70
54874497--54874547	26	2.2	24	78	21	56	60	5	0	33	1.21
54879958--54880002	22	2.0	23	91	8	76	53	8	6	31	1.58
54882705--54882741	16	2.2	17	90	4	58	35	0	0	64	0.94
54891687--54891713	13	2.1	13	100	0	54	48	7	0	44	1.31
54899047--54899105	24	2.5	24	88	2	93	42	1	1	54	1.20
54901441--54901486	24	1.9	24	86	0	65	32	8	39	19	1.82
54903688--54903760	37	2.0	37	94	0	128	49	6	9	34	1.62
54911244--54911326	26	3.3	26	84	3	107	37	22	24	15	1.93
54911256--54911341	26	3.3	26	85	4	104	36	22	25	16	1.94
54914230--54914278	24	2.0	24	100	0	98	32	0	30	36	1.58
54926711--54926749	12	3.2	12	85	0	51	35	10	35	17	1.84
54932608--54932642	18	1.9	18	88	0	52	22	0	60	17	1.37
54932608--54932633	6	4.3	6	100	0	52	15	0	65	19	1.27
54932862--54933134	75	3.7	71	77	11	264	40	10	4	43	1.61
54932862--54933136	73	3.7	73	78	9	290	40	10	4	43	1.61
54944532--54944631	49	2.0	49	86	0	137	28	25	19	28	1.98
54954330--54954530	106	1.9	106	97	0	384	31	18	19	30	1.96
54955382--54955438	22	2.6	23	78	18	75	64	3	7	24	1.34
54956151--54956175	13	1.9	13	100	0	50	68	0	8	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54957997--54958036	21	1.9	21	84	0	53	57	5	0	37	1.21
54962526--54962623	23	4.3	23	84	2	135	30	24	22	22	1.99
54962533--54962621	45	2.0	45	88	0	133	30	24	23	21	1.99
54962772--54962919	75	2.0	75	98	0	287	33	21	8	36	1.83
54965562--54965614	22	2.4	22	80	0	61	18	28	1	50	1.57
54965519--54965611	11	8.5	11	69	15	50	20	30	1	48	1.57
54965632--54965692	26	2.4	25	83	5	68	26	4	4	63	1.35
54966263--54966298	15	2.3	16	90	4	56	25	0	0	75	0.81
54973086--54973136	3	17.0	3	100	0	102	66	0	0	33	0.92
54977081--54977146	20	3.3	20	70	8	71	19	27	21	31	1.97
54977075--54977187	40	2.9	41	88	6	155	17	26	17	38	1.92
54977209--54977289	20	4.2	18	78	10	81	8	27	24	39	1.84
54977209--54977289	19	4.2	19	80	10	92	8	27	24	39	1.84
54977213--54977290	39	2.0	40	85	7	106	8	25	24	41	1.84
54979616--54979681	21	3.3	21	63	16	59	30	31	10	27	1.90
54979606--54979682	38	2.0	38	97	0	145	32	32	11	23	1.91
54986767--54987002	69	3.4	69	78	4	251	36	18	21	23	1.95
54992041--54992091	24	2.1	25	85	3	68	17	27	21	33	1.96
54992052--54992104	24	2.2	24	82	0	61	18	26	22	32	1.97
54995857--54995891	5	7.0	5	93	0	52	57	37	0	5	1.23
55004126--55004170	24	1.9	23	86	13	65	8	22	0	68	1.16
55007893--55007953	6	10.0	6	85	3	77	47	49	1	1	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55008104--55008158	24	2.3	24	78	15	60	45	10	38	5	1.63
55020621--55020846	80	2.8	79	82	10	280	25	26	22	26	2.00
55020621--55020846	120	1.9	120	83	9	300	25	26	22	26	2.00
55020621--55020846	40	5.7	39	85	7	253	25	26	22	26	2.00
55028569--55028794	40	5.7	40	86	4	217	26	26	21	26	1.99
55028569--55028794	80	2.8	79	81	10	271	26	26	21	26	1.99
55032706--55032745	20	2.0	20	85	0	53	27	12	12	47	1.77
55044381--55044505	33	3.7	33	76	7	92	31	15	26	27	1.96
55044384--55044474	33	2.7	34	83	6	96	32	13	25	28	1.93
55044383--55044576	105	1.9	101	84	4	262	31	13	24	29	1.94
55044383--55044599	105	2.1	101	82	5	256	33	14	23	28	1.94
55044521--55044597	33	2.3	32	80	6	82	36	15	20	27	1.93
55045871--55045916	20	2.3	20	84	0	56	30	10	10	47	1.73
55045883--55045920	20	1.9	20	94	0	67	28	5	13	52	1.61
55046995--55047029	10	3.5	10	92	0	61	77	0	22	0	0.78
55046995--55047025	16	1.9	16	93	0	53	77	0	22	0	0.77
55047902--55048040	40	3.5	40	79	6	158	27	20	23	29	1.98
55049369--55049403	17	2.1	17	94	0	61	14	28	14	42	1.84
55051068--55051097	15	2.0	15	93	0	51	66	16	0	16	1.25
55065675--55065703	14	2.0	15	93	6	51	24	0	0	75	0.80
55069820--55069965	37	4.0	37	93	1	242	24	21	16	36	1.94
55069929--55070197	46	5.6	46	84	10	340	28	22	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55069972--55070191	52	4.3	52	85	8	299	27	22	14	35	1.93
55069929--55070197	98	2.7	98	93	0	457	28	22	14	34	1.93
55078287--55078457	43	4.0	43	77	10	174	30	26	18	23	1.97
55078282--55078441	84	1.9	84	84	5	216	30	28	18	23	1.97
55083070--55083107	20	1.9	20	94	0	67	23	7	15	52	1.69
55086234--55086283	26	1.9	26	88	8	75	22	14	4	60	1.51
55094425--55094460	4	9.0	4	100	0	72	25	0	25	50	1.50
55100747--55100984	44	5.5	44	69	14	129	27	21	21	29	1.98
55100674--55100940	128	2.1	129	80	5	317	27	20	21	29	1.98
55100910--55101015	45	2.4	44	84	7	126	25	31	16	27	1.96
55101037--55101482	44	10.1	44	63	12	155	27	22	18	30	1.98
55101037--55101538	132	3.8	132	94	0	871	27	23	18	30	1.98
55102653--55102686	17	2.0	17	94	0	59	20	23	0	55	1.43
55102635--55102697	7	8.7	7	79	17	67	14	17	0	68	1.22
55103590--55103631	20	2.1	20	100	0	84	66	4	14	14	1.40
55106937--55106983	11	4.7	11	82	17	59	10	0	10	78	0.96
55106935--55106996	17	3.6	17	79	12	74	11	0	8	80	0.90
55106954--55106983	11	2.7	11	100	0	60	10	0	13	76	1.01
55107593--55107655	28	2.3	28	86	2	83	25	4	0	69	1.07
55107621--55107655	12	2.8	12	91	4	52	20	2	0	77	0.90
55119864--55120795	44	21.2	44	63	10	265	29	20	25	25	1.99
55119863--55120743	395	2.2	396	94	0	1512	29	19	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55119863--55120743	132	6.7	132	93	0	1485	29	19	25	24	1.99
55120656--55120843	88	2.1	88	90	0	304	29	22	21	26	1.99
55120700--55120839	44	3.2	44	66	15	126	30	20	20	27	1.98
55120828--55120994	44	3.8	44	69	15	121	30	17	24	27	1.97
55121717--55121754	6	6.7	6	85	8	53	13	0	2	84	0.73
55122355--55122428	3	24.3	3	81	8	87	27	2	0	70	1.01
55132828--55132874	23	2.0	22	84	8	58	78	0	12	8	0.95
55133887--55133930	22	2.0	22	90	0	70	38	15	11	34	1.84
55151624--55151886	133	2.0	132	89	0	400	25	20	15	38	1.92
55158496--55158599	51	2.1	50	92	1	172	39	2	21	36	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213