genome.fa.s14.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  165  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49508040--49508122	38	2.1	41	82	10	102	53	3	1	42	1.26
49509977--49510026	25	2.0	25	92	0	82	34	18	10	38	1.84
49512416--49513062	47	13.6	47	91	2	988	32	8	29	29	1.87
49512416--49513062	96	6.8	94	91	2	988	32	8	29	29	1.87
49518481--49518524	22	2.0	22	100	0	88	40	18	4	36	1.71
49523508--49523581	36	2.1	36	100	0	148	24	27	18	29	1.98
49529917--49529965	23	2.1	23	92	0	80	20	20	16	42	1.89
49532374--49532427	13	4.2	13	69	21	51	31	14	14	38	1.87
49534208--49534237	6	5.0	6	91	0	51	70	13	0	16	1.18
49541610--49541646	13	2.7	14	83	8	58	29	29	16	24	1.96
49544594--49544624	6	5.2	6	92	0	53	16	12	0	70	1.16
49544594--49544642	18	2.7	18	90	0	71	14	14	4	67	1.37
49554352--49554471	49	2.4	49	81	4	143	31	20	24	23	1.98
49556645--49556669	6	4.2	6	100	0	50	20	0	0	80	0.72
49556648--49556708	12	5.6	11	79	11	56	21	4	0	73	1.01
49563263--49563398	54	2.6	53	77	2	139	29	22	13	34	1.92
49571006--49571110	46	2.3	45	75	16	110	38	21	15	24	1.92
49571119--49571305	51	3.7	51	81	5	227	31	26	16	26	1.97
49571110--49571301	101	1.9	101	87	5	280	30	26	17	26	1.97
49576776--49576815	19	2.1	19	95	0	71	7	45	22	25	1.78
49585564--49585622	29	2.0	29	86	0	82	27	10	27	35	1.89
49588022--49588063	20	2.1	20	86	0	57	47	0	7	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49589471--49589554	41	2.0	41	97	0	159	33	14	13	39	1.84
49590338--49590367	12	2.5	12	94	0	51	30	13	20	36	1.90
49592645--49592686	20	2.1	20	86	0	57	47	0	7	45	1.30
49596584--49596616	3	11.0	3	100	0	66	33	0	0	66	0.92
49597050--49597121	34	2.2	33	85	7	101	70	1	5	22	1.15
49597067--49597117	18	2.9	18	81	16	63	70	1	1	25	1.08
49605406--49605471	30	2.2	31	86	2	89	24	24	19	31	1.98
49605482--49605641	60	2.6	60	85	2	203	40	20	20	19	1.92
49606691--49606763	30	2.5	29	86	2	92	32	5	15	46	1.68
49607022--49607066	6	7.5	6	97	0	72	26	0	35	37	1.57
49611006--49611064	31	1.9	31	89	3	93	50	6	16	25	1.70
49614519--49614608	46	2.0	46	90	0	144	31	7	13	47	1.71
49614522--49614618	46	2.1	46	86	0	131	30	8	14	46	1.74
49614525--49614631	46	2.4	44	75	13	110	31	7	14	45	1.73
49616731--49616792	22	2.9	22	78	2	72	19	19	16	45	1.86
49619940--49620046	21	5.1	21	76	4	81	46	16	22	14	1.83
49619937--49620120	42	4.4	42	77	2	163	48	14	20	16	1.80
49626855--49627026	21	8.2	21	73	2	112	45	16	19	18	1.86
49626876--49627024	42	3.6	41	81	7	165	45	16	18	19	1.85
49633952--49634148	21	9.4	21	77	6	112	14	19	18	47	1.83
49633941--49634148	42	5.0	42	76	6	190	13	19	18	48	1.81
49633943--49634146	63	3.2	63	82	7	245	14	19	18	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49638212--49638314	46	2.2	46	87	0	152	33	9	12	44	1.75
49638936--49638964	7	4.1	7	100	0	58	41	13	0	44	1.44
49639298--49639370	3	24.3	3	88	0	110	69	0	30	0	0.88
49639728--49639797	36	1.9	36	94	0	122	18	8	24	48	1.76
49641336--49641395	24	2.5	24	81	5	68	38	11	3	46	1.57
49647003--49647055	27	2.0	27	92	3	90	75	7	3	13	1.15
49647011--49647115	43	2.5	42	72	10	97	75	4	4	15	1.14
49649328--49649857	44	12.0	44	86	3	694	27	16	25	30	1.97
49649379--49650817	88	16.4	87	71	10	638	28	17	25	28	1.98
49650211--49650441	128	1.8	127	81	7	288	29	19	23	27	1.99
49649816--49650910	524	2.1	526	91	1	1775	28	18	25	27	1.98
49649527--49650856	44	30.3	44	74	10	431	28	17	25	28	1.98
49649816--49650910	176	6.2	176	92	1	1779	28	18	25	27	1.98
49652670--49652729	24	2.5	24	81	5	68	40	11	1	46	1.50
49654352--49654396	22	2.0	24	86	8	67	26	24	2	46	1.64
49655574--49655634	26	2.4	26	88	2	88	50	14	8	26	1.71
49655549--49655641	28	3.5	25	81	11	98	49	15	8	26	1.73
49657397--49657441	15	3.0	15	86	0	63	37	35	8	17	1.81
49657888--49657947	6	10.0	6	92	0	93	63	15	3	18	1.44
49657896--49657959	6	10.7	6	93	0	65	60	14	6	18	1.54
49669576--49669607	11	2.9	11	90	0	55	56	28	6	9	1.55
49676670--49677192	50	10.6	50	82	4	600	19	31	19	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49676670--49677193	97	5.3	97	88	0	679	19	31	20	28	1.97
49680640--49680720	41	2.0	41	85	0	108	34	24	20	19	1.96
49680919--49680956	14	2.7	15	80	12	53	55	13	0	31	1.38
49684091--49684147	30	1.9	30	85	0	78	38	10	22	28	1.87
49684485--49684677	50	3.8	50	82	0	224	27	22	29	20	1.99
49684497--49684677	100	1.8	101	87	1	274	28	21	28	21	1.99
49685198--49685259	31	2.0	31	96	0	115	29	6	27	37	1.82
49686307--49686443	40	3.5	38	77	9	125	32	24	16	26	1.96
49687382--49687455	5	14.8	5	100	0	148	59	0	0	40	0.97
49687447--49687505	24	2.5	24	100	0	118	50	3	3	42	1.35
49691125--49691183	22	2.6	22	94	2	100	30	27	0	42	1.56
49691133--49691232	52	1.9	52	89	0	155	30	31	0	39	1.57
49691185--49691237	22	2.4	22	84	6	72	33	32	0	33	1.58
49691263--49691326	29	2.2	28	83	8	85	39	1	1	57	1.17
49691272--49691333	29	2.1	29	82	11	74	38	0	1	59	1.07
49691424--49691457	15	2.3	15	90	5	52	26	0	5	67	1.13
49692416--49692440	7	3.6	7	100	0	50	28	0	12	60	1.32
49693292--49693347	24	2.3	24	100	0	112	28	35	17	17	1.93
49693626--49695953	29	79.6	29	81	7	2622	43	21	1	33	1.62
49699155--49699430	125	2.2	126	88	5	400	32	21	14	30	1.93
49699655--49699715	29	2.1	29	84	3	79	42	13	14	29	1.84
49706753--49707000	124	2.1	118	84	9	322	39	13	10	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49713190--49713541	52	7.0	52	85	8	458	34	14	22	28	1.93
49713190--49713548	98	3.6	98	89	2	511	34	13	22	28	1.93
49713182--49713541	150	2.4	151	87	9	554	34	14	22	28	1.93
49713512--49713731	37	6.0	37	94	1	372	37	16	21	24	1.93
49714985--49715152	58	3.0	58	87	10	237	22	13	30	33	1.92
49715004--49715094	28	3.2	28	66	22	80	25	15	31	27	1.95
49715045--49715187	49	2.9	49	93	0	232	23	13	30	32	1.94
49718324--49718780	52	9.1	51	83	9	557	34	14	22	28	1.93
49718316--49718781	98	4.7	98	91	1	680	34	14	22	28	1.93
49718744--49718963	37	6.0	37	94	1	372	37	16	21	24	1.93
49722152--49722220	34	2.0	34	94	0	120	40	2	17	39	1.64
49726191--49726237	17	2.8	17	90	6	69	68	2	0	29	1.02
49726191--49726239	9	5.7	9	83	9	66	67	2	0	30	1.02
49726192--49726237	8	5.5	8	85	10	56	67	2	0	30	1.03
49726267--49726317	18	2.8	18	75	3	57	64	0	1	33	1.05
49726675--49726707	16	2.0	16	94	5	57	36	0	0	63	0.95
49726782--49726830	20	2.4	21	80	16	59	30	0	2	67	1.02
49726786--49726835	10	5.2	10	75	15	52	30	0	2	68	1.01
49732423--49732453	3	10.3	3	100	0	62	64	0	0	35	0.94
49732945--49732987	18	2.3	19	88	4	61	55	0	9	34	1.32
49735301--49735354	29	2.0	26	85	10	72	25	0	1	72	0.95
49743195--49743305	43	2.6	43	89	1	150	32	22	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49743480--49743594	31	3.7	31	89	1	169	46	18	6	28	1.75
49746207--49746276	33	2.2	33	87	5	99	31	22	7	38	1.81
49746217--49746284	33	2.1	33	100	0	136	27	23	5	42	1.77
49753641--49753839	52	3.8	52	81	4	236	29	8	14	48	1.71
49755653--49755801	43	3.5	43	79	8	160	28	24	16	30	1.96
49756360--49756404	21	2.1	21	100	0	90	51	11	8	28	1.68
49759014--49759275	46	5.6	46	86	7	352	29	20	15	33	1.94
49764119--49764306	23	8.2	22	70	11	92	31	4	22	41	1.73
49764097--49764290	46	4.2	46	77	4	158	30	4	23	41	1.73
49764825--49764920	45	2.2	44	88	5	140	37	25	5	32	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213