genome.fa.s14.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  212  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63720435--63720465	2	15.0	2	93	6	53	48	0	3	48	1.17
63730561--63730606	22	2.2	20	81	11	56	45	0	2	52	1.13
63746892--63747077	73	2.5	73	95	0	336	28	7	23	40	1.82
63756322--63756362	18	2.2	19	83	12	50	21	4	9	63	1.44
63757851--63757935	45	1.9	45	88	4	129	44	11	10	32	1.75
63759097--63759182	30	2.9	29	70	5	73	25	13	11	48	1.77
63765647--63765858	116	1.8	118	87	5	322	25	11	16	46	1.81
63767167--63767281	57	2.0	57	83	1	142	33	16	22	27	1.96
63767300--63767526	116	2.0	113	88	9	344	35	16	20	28	1.94
63767915--63767981	20	3.3	20	74	13	66	62	2	0	34	1.10
63769001--63769228	112	2.0	114	89	2	352	37	21	13	26	1.91
63774604--63774633	13	2.3	13	94	0	51	13	6	20	60	1.55
63778986--63779028	20	2.2	19	83	4	50	55	6	2	34	1.39
63778787--63779727	339	2.8	339	98	0	1803	44	9	11	35	1.73
63781620--63781694	37	2.0	37	94	0	132	18	22	22	36	1.95
63782505--63782552	24	2.0	24	95	0	87	39	20	10	29	1.86
63783666--63783747	41	2.0	41	100	0	164	7	21	29	41	1.80
63793440--63793525	41	2.1	41	100	0	172	38	13	16	31	1.88
63802040--63802080	21	2.0	21	81	18	50	21	26	19	31	1.97
63810947--63811014	21	3.2	21	95	2	118	20	20	38	20	1.94
63815092--63815151	30	2.0	30	90	0	93	26	26	15	31	1.95
63815961--63815992	16	2.0	16	100	0	64	25	12	18	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63817571--63817600	14	2.1	14	100	0	60	53	6	6	33	1.53
63832371--63832400	15	2.0	15	100	0	60	66	13	20	0	1.24
63836677--63836816	69	2.0	69	98	0	271	23	22	29	24	1.99
63845327--63845369	22	2.0	22	86	4	61	34	4	2	58	1.32
63846129--63846426	99	3.0	100	82	8	363	25	6	19	49	1.71
63849297--63849321	3	8.3	3	100	0	50	32	0	36	32	1.58
63853956--63853990	18	1.9	18	88	0	52	20	5	20	54	1.64
63854622--63854677	23	2.3	24	84	6	69	58	0	3	37	1.15
63855647--63855695	21	2.3	20	76	10	53	34	2	8	55	1.41
63858128--63858181	22	2.5	22	81	3	65	27	7	9	55	1.58
63859659--63859706	21	2.3	21	85	0	78	37	18	14	29	1.91
63868238--63868281	6	7.5	6	94	2	63	31	15	11	40	1.83
63868772--63868827	28	2.0	27	86	10	78	48	5	0	46	1.25
63870997--63871154	51	3.1	50	90	2	253	32	15	24	28	1.95
63873141--63873185	9	4.9	9	80	2	54	62	4	0	33	1.15
63873692--63873723	16	2.0	16	93	0	55	78	0	21	0	0.76
63873919--63874243	108	3.0	106	77	8	337	39	14	14	32	1.86
63874467--63874497	13	2.3	14	94	5	55	0	12	0	87	0.55
63877169--63877195	13	2.1	13	100	0	54	25	29	14	29	1.95
63886511--63886589	40	2.0	40	84	0	104	22	7	21	48	1.75
63889376--63889403	13	2.2	13	100	0	56	60	14	0	25	1.34
63889957--63890006	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63894586--63894635	17	2.7	20	78	18	70	10	0	44	46	1.37
63908116--63908340	111	2.0	110	95	0	405	38	9	15	36	1.80
63908919--63908943	13	1.9	13	100	0	50	20	8	16	56	1.65
63923441--63923489	21	2.4	19	80	10	53	34	4	0	61	1.15
63933223--63933364	62	2.2	64	87	4	209	36	20	11	30	1.89
63952245--63952601	193	1.8	193	86	3	513	23	22	18	35	1.95
63952409--63953305	275	3.3	271	85	2	1098	23	25	19	30	1.98
63959620--63959657	17	2.2	17	100	0	76	34	0	15	50	1.45
63965048--63965072	7	3.6	7	100	0	50	44	12	0	44	1.41
63988041--63988081	21	2.0	21	90	0	64	29	21	29	19	1.98
64003190--64003251	32	2.0	32	87	3	90	38	14	12	33	1.84
64011776--64012168	202	2.0	198	87	2	570	37	19	17	25	1.94
64022920--64022946	4	6.8	4	100	0	54	25	22	0	51	1.48
64023396--64023898	102	4.8	102	86	3	621	17	24	21	36	1.95
64023681--64024018	111	3.0	108	82	6	363	20	24	19	35	1.96
64023742--64024090	111	3.1	110	83	4	326	22	23	18	34	1.96
64026553--64026607	23	2.4	23	93	3	94	36	0	20	43	1.52
64027311--64027352	22	1.9	22	90	0	66	16	21	11	50	1.77
64028594--64028627	18	1.9	18	88	5	52	55	0	0	44	0.99
64029703--64029950	123	2.0	123	91	1	399	35	8	18	37	1.81
64040656--64040710	27	2.1	27	86	3	76	29	0	1	69	0.99
64040872--64041153	143	2.0	143	92	0	474	34	17	18	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64041501--64041554	8	6.4	9	79	16	55	31	0	3	64	1.11
64053826--64053851	13	2.0	13	100	0	52	38	15	15	30	1.88
64060541--64060609	29	2.3	29	82	5	84	60	5	2	30	1.34
64069092--64069123	15	2.1	16	88	11	50	18	6	6	68	1.32
64069751--64069814	30	2.1	32	85	5	87	51	4	1	42	1.32
64069818--64069850	16	2.0	17	88	5	50	60	0	0	39	0.97
64073883--64073922	21	2.0	20	85	14	55	55	2	0	42	1.13
64075723--64075765	22	2.0	22	100	0	86	58	4	4	32	1.39
64093510--64094382	285	3.0	285	88	4	1256	42	19	11	26	1.85
64097615--64097768	84	1.8	83	91	1	254	37	2	22	37	1.68
64105018--64105074	22	2.6	22	83	8	71	63	12	8	15	1.52
64105406--64105480	28	2.6	30	83	10	93	53	4	0	42	1.19
64105705--64105745	16	2.8	14	79	13	55	31	0	2	65	1.05
64105955--64106006	24	2.2	24	100	0	104	34	7	19	38	1.80
64106054--64106096	22	2.0	22	81	9	52	23	11	6	58	1.57
64111135--64111477	50	6.8	50	93	0	569	20	31	22	25	1.98
64111572--64111602	13	2.4	13	94	0	53	54	12	0	32	1.38
64118350--64118642	50	5.8	50	93	0	478	20	31	22	25	1.98
64118737--64118767	13	2.4	13	94	0	53	54	12	0	32	1.38
64122281--64122324	22	2.0	22	86	13	63	68	0	0	31	0.90
64123569--64123669	50	2.0	49	90	1	157	9	25	7	56	1.59
64123654--64123681	3	9.3	3	100	0	56	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64123970--64123999	15	2.0	15	93	0	51	0	23	0	76	0.78
64145740--64145772	18	1.9	18	88	11	52	36	0	9	54	1.32
64148629--64148675	4	11.8	4	95	0	76	25	4	23	46	1.70
64156016--64156040	11	2.3	11	100	0	50	28	28	0	44	1.55
64156491--64156543	23	2.2	24	83	3	63	67	5	24	1	1.22
64169504--64169689	73	2.5	73	99	0	363	41	24	6	27	1.79
64169690--64169727	3	12.7	3	100	0	76	68	0	0	31	0.90
64173945--64174130	73	2.5	73	99	0	363	41	24	6	27	1.79
64174131--64174162	3	10.7	3	100	0	64	68	0	0	31	0.90
64183116--64183156	21	2.0	21	90	0	64	29	21	29	19	1.98
64195437--64195471	17	1.9	19	88	11	56	40	0	5	54	1.24
64219366--64219404	3	13.0	3	100	0	78	33	0	33	33	1.58
64219576--64219609	6	5.7	6	100	0	68	50	14	0	35	1.44
64223800--64223838	21	1.9	21	89	5	62	33	7	2	56	1.41
64224541--64224579	19	2.1	19	100	0	78	30	5	30	33	1.79
64224863--64224901	19	2.1	19	85	4	53	69	2	0	28	1.02
64247354--64247378	13	1.9	13	100	0	50	40	12	16	32	1.84
64259161--64259192	16	2.0	16	100	0	64	56	25	0	18	1.42
64263690--64263724	4	8.8	4	100	0	70	25	0	22	51	1.48
64270932--64270994	31	2.1	29	88	5	90	33	9	9	47	1.68
64288074--64288104	6	5.2	6	100	0	62	16	35	16	32	1.91
64307191--64307231	4	10.2	4	100	0	82	51	24	0	24	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64330708--64330790	41	2.0	41	100	0	166	33	18	12	36	1.87
64332075--64332128	28	1.9	29	85	7	76	51	1	1	44	1.22
64332227--64332262	18	1.9	19	88	5	56	75	2	0	22	0.94
64332802--64332847	18	2.7	16	81	15	56	13	17	0	69	1.19
64339843--64340070	113	2.0	113	96	0	420	39	17	10	32	1.85
64348900--64348943	20	2.2	20	84	11	56	52	4	2	40	1.34
64355818--64355854	18	2.0	19	94	5	67	64	5	18	10	1.43
64356096--64356137	21	2.0	21	85	0	57	30	9	23	35	1.87
64356525--64356562	20	1.9	20	88	0	58	44	13	13	28	1.81
64381843--64381925	22	3.6	22	78	4	76	19	25	15	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213