genome.fa.s14.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  187  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56339326--56339411	7	11.9	7	77	19	63	74	0	4	20	1.00
56339325--56339380	25	2.3	25	87	9	80	73	0	3	23	0.99
56342481--56342505	8	3.1	8	100	0	50	88	0	0	12	0.53
56343357--56343392	15	2.5	14	86	8	54	44	8	0	47	1.33
56345031--56345094	31	2.1	31	96	0	119	29	25	3	42	1.70
56346559--56346643	40	2.2	39	82	6	100	38	5	24	30	1.79
56346855--56346915	12	5.1	12	75	0	59	22	11	11	54	1.68
56346849--56346912	18	3.6	18	81	8	76	23	12	9	54	1.66
56346931--56346998	6	11.3	6	82	0	55	22	5	16	55	1.62
56346962--56347004	12	3.6	12	87	0	50	18	0	25	55	1.42
56347209--56347325	61	1.9	61	89	0	180	24	8	23	42	1.82
56347452--56347497	15	3.1	15	80	0	56	19	8	34	36	1.83
56349207--56349269	28	2.3	28	86	2	83	22	6	17	53	1.65
56353956--56354041	42	2.1	41	93	2	145	20	18	19	40	1.91
56356998--56357238	108	2.3	107	81	9	269	42	7	11	38	1.69
56373924--56374047	24	5.0	25	75	14	96	33	19	26	20	1.97
56373971--56374061	25	3.5	24	75	20	78	31	21	24	21	1.98
56373929--56374068	25	5.6	24	71	18	63	33	20	26	19	1.96
56374154--56374216	25	2.6	25	76	2	65	34	17	26	20	1.95
56376340--56376401	26	2.4	26	88	0	88	35	9	11	43	1.73
56378279--56378335	10	5.2	11	74	21	57	21	35	0	43	1.52
56378296--56378348	22	2.4	22	96	3	97	26	32	0	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56379534--56379558	7	3.6	7	100	0	50	28	0	12	60	1.32
56380654--56380799	37	4.0	37	93	1	242	24	21	16	36	1.94
56380763--56381024	46	5.6	46	88	6	373	28	22	14	34	1.94
56380897--56381010	52	2.2	52	87	4	158	28	22	12	35	1.91
56380763--56381024	91	2.8	91	90	4	398	28	22	14	34	1.94
56383177--56383211	18	1.9	18	94	0	61	25	31	8	34	1.86
56383626--56383709	43	2.0	42	88	6	125	40	1	11	46	1.48
56383672--56383786	35	3.3	35	62	21	87	39	0	14	45	1.51
56383687--56383798	25	4.7	25	69	20	105	41	0	14	42	1.51
56383644--56383798	69	2.3	69	92	5	253	41	1	13	43	1.52
56383826--56384346	29	19.0	29	72	19	388	46	24	0	28	1.55
56383863--56384013	80	1.9	75	86	6	212	47	25	0	27	1.53
56383921--56383966	22	2.2	20	88	11	67	45	28	0	26	1.54
56383835--56384313	51	9.0	49	77	17	431	46	24	0	28	1.55
56383835--56384346	109	4.7	104	78	15	447	46	24	0	28	1.55
56384084--56384128	22	2.2	20	88	11	65	46	26	0	26	1.53
56384331--56384370	22	1.9	20	90	10	62	47	35	0	17	1.48
56384404--56384562	37	4.2	36	63	16	88	40	10	6	42	1.64
56384372--56384702	115	2.9	115	96	1	610	39	9	8	42	1.67
56384679--56384719	17	2.4	17	83	0	55	43	9	2	43	1.50
56401861--56401923	31	2.0	31	84	3	81	42	4	14	38	1.66
56408555--56408592	20	1.9	20	94	0	67	36	26	26	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56409379--56409433	21	2.8	19	84	13	60	67	0	9	23	1.19
56410355--56410475	39	3.0	40	85	2	154	15	17	26	40	1.89
56410370--56410486	40	3.0	40	85	1	146	13	17	28	41	1.87
56412661--56412706	21	2.1	22	84	11	60	47	19	0	32	1.50
56413442--56413488	22	2.1	22	84	7	60	36	2	4	57	1.30
56413530--56413596	16	4.5	16	67	17	54	50	10	1	37	1.46
56413559--56413609	16	2.8	19	67	27	56	49	13	0	37	1.43
56413537--56413703	86	2.0	84	83	8	214	47	8	5	38	1.57
56413748--56413804	16	3.6	16	85	0	78	43	3	5	47	1.43
56413777--56413839	22	2.7	23	90	4	92	47	0	3	49	1.17
56425591--56425673	11	7.5	10	75	15	67	4	2	30	62	1.28
56425591--56425672	21	3.7	22	82	9	94	4	2	29	63	1.28
56425830--56425914	41	2.1	40	84	2	107	20	2	10	67	1.32
56426240--56426282	22	2.0	22	81	9	52	30	6	4	58	1.45
56442491--56442526	2	18.0	2	100	0	72	0	0	50	50	1.00
56445999--56446042	17	2.8	16	93	6	72	77	15	0	6	0.97
56446280--56446315	17	2.1	17	100	0	72	52	5	36	5	1.48
56455801--56455829	15	1.9	15	100	0	58	44	13	6	34	1.71
56466047--56466095	25	2.0	24	96	4	89	53	4	18	24	1.62
56483454--56483896	51	8.7	50	77	3	368	30	15	25	28	1.96
56483450--56483887	102	4.3	102	92	1	639	29	15	26	28	1.96
56486766--56487062	50	5.8	50	81	3	274	23	27	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56491349--56491448	50	2.0	50	98	0	191	38	15	18	29	1.90
56492952--56493043	29	3.2	29	81	6	98	19	29	23	27	1.98
56493756--56493863	39	2.7	39	82	4	101	32	16	21	29	1.95
56496857--56496892	16	2.2	16	95	0	63	27	0	33	38	1.57
56497128--56497162	18	2.0	17	88	5	52	54	0	0	45	0.99
56497015--56497330	156	2.0	157	95	0	571	43	3	5	48	1.42
56497404--56497438	18	2.0	17	88	5	52	54	0	0	45	0.99
56497503--56497554	15	3.6	15	80	12	56	53	1	0	44	1.11
56497267--56497672	120	3.4	120	95	2	710	48	5	2	43	1.41
56497710--56497903	92	2.1	92	84	5	250	46	5	3	44	1.44
56501405--56501477	23	3.3	23	66	11	71	47	4	2	45	1.36
56502348--56502569	52	4.0	52	76	17	241	43	21	9	25	1.82
56502740--56502794	22	2.5	22	85	5	67	40	25	12	21	1.89
56504881--56504960	30	2.6	30	80	11	83	48	1	5	45	1.32
56521977--56522014	14	2.5	16	79	16	53	60	0	10	28	1.30
56525807--56526618	132	6.2	132	95	0	1381	24	24	20	29	1.99
56525873--56526582	44	16.1	44	65	15	200	24	25	20	30	1.99
56534372--56534451	41	2.0	41	97	0	151	17	32	16	33	1.92
56538949--56538973	11	2.3	11	100	0	50	8	28	56	8	1.57
56540223--56540252	11	2.6	11	94	5	51	36	3	0	60	1.14
56549043--56549081	20	1.9	21	84	5	53	61	20	17	0	1.34
56561944--56562036	18	5.2	18	90	0	150	31	16	24	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56561944--56562036	36	2.6	36	96	0	168	31	16	24	27	1.96
56565100--56565285	37	5.0	37	95	0	309	26	20	14	37	1.92
56567405--56567435	15	2.1	15	93	0	53	29	29	6	35	1.82
56573123--56573165	18	2.4	18	88	0	59	67	4	0	27	1.10
56598528--56598574	20	2.3	21	82	14	62	46	2	2	48	1.25
56609224--56609327	50	2.1	50	92	0	172	31	19	21	27	1.97
56615446--56615480	18	1.9	18	88	0	52	74	8	8	8	1.23
56630494--56630597	50	2.1	50	92	0	172	31	19	21	27	1.97
56636719--56636753	18	1.9	18	88	0	52	74	8	8	8	1.23
56639679--56639739	22	2.7	22	78	12	70	40	3	0	55	1.16
56648692--56648747	29	1.9	30	85	7	80	39	0	10	50	1.37
56648704--56648763	29	2.1	29	81	9	70	38	1	10	50	1.46
56651223--56651274	23	2.2	24	83	10	63	75	1	3	19	1.06
56651539--56651634	19	4.7	21	79	10	74	40	15	6	37	1.73
56651539--56651596	22	2.6	22	81	7	64	41	17	5	36	1.72
56651575--56651647	19	3.8	19	92	0	128	36	15	9	38	1.80
56655808--56655966	46	3.5	46	93	3	270	32	15	23	28	1.95
56655903--56656030	62	2.0	64	94	5	226	33	12	25	28	1.92
56655857--56656071	108	2.0	107	95	0	385	33	14	24	27	1.94
56655965--56656071	46	2.4	44	90	4	162	33	14	24	27	1.95
56658894--56658924	11	2.8	11	100	0	62	29	19	29	22	1.98
56658983--56659092	43	2.5	41	78	8	112	31	13	22	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56660362--56660477	57	2.0	57	98	0	223	35	5	21	37	1.76
56668177--56668424	29	8.5	29	73	8	155	24	23	13	39	1.90
56668260--56668419	87	1.8	87	84	5	216	26	23	11	39	1.88
56668231--56668424	58	3.4	57	76	8	196	24	23	12	39	1.90
56683025--56683049	4	6.2	4	100	0	50	52	24	0	24	1.48
56697460--56697552	18	5.2	18	89	0	141	32	16	22	29	1.95
56702201--56702469	52	5.2	52	88	6	388	35	14	22	27	1.93
56702195--56702469	98	2.7	98	90	3	415	34	14	22	28	1.93
56702433--56702615	37	5.0	37	95	1	307	36	16	22	24	1.94
56706097--56706156	31	1.9	31	86	0	84	26	16	6	50	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213