genome.fa.s14.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  176  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53057304--53057423	60	2.0	60	96	3	224	20	48	5	26	1.70
53062531--53062618	29	3.0	29	81	3	97	36	4	26	32	1.77
53073224--53073280	26	2.1	28	90	6	91	38	22	10	28	1.87
53081477--53081526	5	10.0	5	97	0	73	34	0	6	60	1.21
53083037--53083069	16	1.9	18	88	11	52	51	6	0	42	1.26
53085763--53085815	19	2.8	19	80	11	56	15	5	7	71	1.27
53085757--53085805	18	2.6	18	79	17	55	12	6	8	73	1.24
53091693--53091816	63	2.0	63	88	0	185	35	22	11	30	1.89
53096754--53096851	44	2.2	45	88	1	144	26	27	15	30	1.96
53097096--53097523	45	9.6	44	68	8	195	25	24	19	30	1.98
53097086--53097557	89	5.3	89	94	0	784	26	23	19	30	1.98
53106993--53107031	20	2.0	20	90	10	62	15	23	5	56	1.59
53113860--53113903	20	2.1	21	87	4	63	22	11	0	65	1.24
53119781--53119838	26	2.2	26	100	0	116	58	24	3	13	1.51
53120902--53120939	20	2.0	20	89	5	60	28	10	0	60	1.30
53128023--53128085	26	2.5	24	78	12	72	15	23	19	41	1.90
53130358--53130411	28	1.9	28	85	7	74	14	24	20	40	1.90
53149015--53149111	34	2.9	34	77	7	108	20	22	12	44	1.85
53152096--53152178	33	2.5	32	81	9	96	27	28	14	28	1.95
53152088--53152313	101	2.2	101	81	0	254	28	23	14	34	1.93
53159656--53159797	33	4.2	33	70	10	90	30	22	14	33	1.93
53159622--53159832	101	2.1	101	83	3	255	28	21	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53160523--53160563	17	2.3	18	87	8	57	73	9	2	14	1.19
53170193--53170472	142	2.0	142	94	0	497	37	13	17	31	1.89
53170646--53170843	40	4.9	40	81	3	202	31	21	21	24	1.98
53170894--53171002	40	2.7	40	84	1	128	32	21	22	24	1.98
53170748--53171112	149	2.5	145	84	5	471	32	19	22	25	1.98
53170935--53171211	104	2.6	105	83	8	325	32	18	24	24	1.97
53171426--53171476	21	2.5	21	78	9	61	15	0	35	49	1.45
53171426--53171484	21	2.8	20	72	7	55	16	0	35	47	1.47
53171675--53171839	14	11.6	14	70	8	68	21	0	30	47	1.56
53171694--53171760	34	1.9	35	90	3	109	20	0	28	50	1.48
53171773--53171839	7	9.4	7	75	3	53	22	0	31	46	1.52
53171794--53171835	15	2.9	15	82	3	50	23	0	28	47	1.52
53171668--53171837	21	8.1	20	71	10	97	22	0	29	47	1.56
53174346--53174401	9	6.2	9	75	8	51	48	19	0	32	1.49
53174443--53174569	21	6.4	21	68	17	92	45	17	0	36	1.54
53174463--53174630	9	18.0	9	72	15	101	46	19	0	33	1.54
53174473--53174628	42	3.3	46	80	13	167	46	19	0	33	1.55
53174443--53174642	98	2.1	93	88	7	287	46	17	0	36	1.52
53174801--53174831	14	2.2	14	100	0	62	16	25	16	41	1.88
53176126--53176154	14	2.1	14	93	6	51	34	0	10	55	1.34
53176966--53177122	43	3.8	43	74	13	148	28	15	21	34	1.94
53177831--53177859	5	5.8	5	100	0	58	20	0	0	79	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53186942--53186969	11	2.5	11	100	0	56	46	0	0	53	1.00
53188800--53189007	27	7.7	27	81	2	229	38	14	25	22	1.91
53188800--53189011	81	2.6	81	82	3	255	39	14	24	21	1.90
53189136--53189187	27	1.9	27	84	0	68	38	15	19	26	1.91
53190976--53191013	5	7.6	5	96	0	67	36	0	21	42	1.53
53191269--53191361	36	2.6	37	82	5	118	16	10	30	43	1.82
53197572--53197671	50	2.0	50	86	0	137	37	16	26	21	1.93
53223856--53223997	71	2.0	71	97	0	266	29	8	16	45	1.77
53224591--53224741	39	3.7	39	78	10	151	41	7	5	44	1.58
53240072--53240105	7	4.9	7	96	0	59	58	8	0	32	1.29
53244495--53244617	17	7.2	16	67	23	56	37	5	0	56	1.29
53244494--53244595	19	5.9	18	69	22	60	38	5	0	54	1.31
53244490--53244642	49	2.9	53	81	9	188	35	6	1	56	1.34
53246296--53246347	11	4.7	11	76	9	61	59	5	0	34	1.21
53246272--53246347	33	2.2	34	88	9	111	55	6	0	38	1.26
53247105--53247132	14	2.0	14	100	0	56	21	14	14	50	1.78
53250858--53250905	22	2.2	22	96	0	87	18	8	8	64	1.46
53261227--53261692	143	3.3	142	85	3	596	29	19	22	28	1.98
53261557--53261785	99	2.3	99	90	0	350	30	18	21	28	1.97
53261756--53261861	44	2.4	45	87	1	142	27	22	18	31	1.97
53261414--53261886	242	2.0	242	80	3	549	30	19	21	28	1.98
53263327--53263367	22	1.9	22	90	5	66	24	4	0	70	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53263572--53263605	18	1.9	17	88	5	50	23	2	2	70	1.15
53265188--53265281	41	2.3	41	81	0	107	39	13	15	30	1.87
53269293--53269478	90	2.1	90	98	0	363	38	13	19	28	1.90
53272398--53272482	23	3.7	23	80	3	98	30	7	7	55	1.54
53272413--53272474	24	2.7	23	80	5	70	33	8	6	51	1.57
53272370--53272482	47	2.4	47	82	4	131	31	7	6	54	1.52
53276624--53276719	43	2.2	44	86	1	131	33	26	15	25	1.95
53280262--53280333	35	2.1	35	100	0	144	41	13	11	33	1.80
53280998--53281056	30	1.9	30	86	3	82	49	1	18	30	1.58
53282611--53282667	26	2.2	26	96	0	105	42	3	21	33	1.70
53282380--53282862	249	1.9	250	95	1	878	40	5	21	32	1.76
53283170--53283278	57	1.9	57	90	3	175	30	18	27	23	1.98
53283298--53283423	67	1.9	67	95	3	227	21	19	30	28	1.97
53283536--53283594	26	2.3	26	79	5	66	50	5	11	32	1.61
53285026--53285152	49	2.6	49	85	0	182	25	14	29	30	1.95
53288730--53288856	67	1.9	67	93	0	218	22	15	33	28	1.95
53290027--53290082	30	1.9	30	85	7	80	50	3	14	32	1.60
53297369--53297400	13	2.3	15	89	10	50	6	0	25	68	1.12
53315475--53315907	95	4.6	94	75	7	326	25	15	19	39	1.91
53315911--53315955	20	2.2	20	84	7	56	40	13	31	15	1.86
53316961--53317185	20	11.0	21	66	16	73	27	14	19	39	1.90
53316970--53317062	41	2.2	42	80	14	104	29	11	21	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53330001--53330303	137	2.2	138	87	0	437	45	6	7	40	1.59
53330278--53330424	75	2.0	75	85	5	199	30	14	10	44	1.79
53357147--53357176	15	1.9	16	93	6	53	56	0	0	43	0.99
53388239--53388334	41	2.3	41	83	5	122	22	21	23	31	1.99
53391628--53391669	17	2.5	17	100	0	84	57	0	11	30	1.35
53394169--53394231	27	2.3	27	86	5	83	30	20	4	44	1.72
53407628--53407670	21	2.0	21	95	0	77	13	20	18	46	1.83
53424479--53424565	43	2.0	43	95	0	156	22	16	14	45	1.84
53426079--53426112	13	2.5	13	85	4	50	67	0	2	29	1.05
53426078--53426125	14	3.3	15	77	14	55	68	0	2	29	1.01
53427754--53427870	47	2.5	48	76	9	125	55	5	5	33	1.46
53427724--53427888	24	7.2	23	72	10	124	55	4	5	34	1.42
53429361--53429464	45	2.3	45	80	3	111	26	28	15	28	1.96
53429595--53430120	51	10.8	50	78	10	518	30	24	17	28	1.97
53429576--53430120	97	5.6	97	82	3	682	29	24	17	28	1.97
53431850--53431914	27	2.4	27	75	10	71	27	27	13	30	1.94
53431946--53432021	27	2.8	27	85	0	107	31	22	9	36	1.86
53434121--53434176	29	1.9	29	100	0	112	14	10	25	50	1.75
53439515--53439562	24	1.9	24	83	8	60	56	4	6	33	1.44
53441032--53441288	44	5.9	44	77	5	191	27	24	17	29	1.98
53441081--53441288	45	4.8	42	77	10	170	27	25	18	28	1.98
53441300--53442179	46	18.3	46	76	10	724	29	24	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53441313--53442206	97	9.2	96	81	6	752	29	24	17	27	1.97
53441324--53442189	194	4.5	194	80	8	883	29	24	17	28	1.97
53443435--53443470	14	2.5	15	90	9	65	13	11	0	75	1.06
53449705--53449739	13	2.5	14	90	9	54	62	5	0	31	1.18
53450035--53450078	18	2.3	19	84	7	63	59	2	4	34	1.30
53455050--53455099	24	2.1	24	92	0	82	24	28	10	38	1.87
53457613--53457844	126	1.8	129	84	5	319	24	15	21	38	1.92
53457810--53458309	69	7.2	69	77	3	396	18	22	23	35	1.96
53457807--53458309	138	3.6	137	78	3	463	18	22	23	35	1.96
53478409--53478455	24	1.9	24	86	4	67	57	4	6	31	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213