genome.fa.s14.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  209  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62625460--62625655	98	2.0	97	93	1	338	36	25	10	28	1.88
62627131--62627243	19	5.8	19	86	4	163	37	13	10	38	1.79
62627131--62627236	40	2.7	38	90	5	167	37	12	10	39	1.77
62627131--62627242	59	1.9	59	90	0	179	37	12	10	39	1.78
62631021--62631174	63	2.4	63	100	0	308	21	20	15	42	1.88
62637489--62637518	6	5.0	6	95	0	51	53	0	13	33	1.40
62638450--62638803	133	2.6	133	80	8	389	31	14	21	32	1.93
62638450--62638817	134	2.8	132	78	7	370	32	14	20	32	1.92
62639169--62639208	20	2.0	21	85	5	55	17	5	40	37	1.72
62645346--62645440	29	3.2	28	76	7	100	37	18	2	41	1.63
62645909--62645991	14	6.0	14	75	10	64	69	0	28	1	0.96
62651997--62652024	11	2.5	11	100	0	56	25	10	0	64	1.26
62652013--62652801	77	10.3	76	84	8	971	26	16	21	36	1.94
62652013--62652801	157	5.1	154	85	7	972	26	16	21	36	1.94
62652962--62653078	29	4.0	29	68	7	85	32	19	6	41	1.78
62653390--62653452	24	2.7	24	85	4	67	74	6	15	3	1.15
62653401--62653452	24	2.2	23	89	3	77	75	5	17	1	1.10
62653537--62653591	4	14.0	4	75	24	55	72	0	25	1	0.94
62653538--62653628	18	5.4	16	74	17	78	73	0	24	2	0.94
62653537--62653634	7	14.0	7	70	22	55	73	0	24	2	0.94
62653538--62653628	10	8.7	10	78	14	78	73	0	24	2	0.94
62653554--62653636	7	11.4	7	71	16	62	75	0	22	1	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62653961--62654004	14	2.9	16	83	13	65	81	0	18	0	0.68
62654314--62654346	17	1.9	17	93	0	57	30	12	12	45	1.78
62654357--62654393	16	2.2	17	90	4	58	24	2	2	70	1.14
62654535--62654577	18	2.4	18	96	0	77	20	13	13	51	1.76
62656208--62656247	21	1.9	21	89	0	62	30	22	45	2	1.66
62656208--62656258	21	2.4	21	83	6	59	33	19	45	1	1.62
62656633--62656977	42	8.1	42	78	5	262	30	20	21	27	1.98
62656731--62656927	88	2.3	84	84	3	241	32	22	20	24	1.98
62657151--62657334	43	4.3	42	88	3	260	32	33	16	17	1.93
62657151--62657377	86	2.6	87	84	4	273	33	33	15	17	1.91
62657403--62657449	24	2.0	23	83	8	58	40	0	4	55	1.19
62661894--62661925	13	2.3	15	89	10	50	56	0	0	43	0.99
62662494--62662533	20	2.0	20	85	4	55	50	17	10	22	1.76
62662600--62662641	7	6.0	7	83	10	59	47	38	0	14	1.44
62662601--62662641	13	2.9	14	85	10	57	48	36	0	14	1.44
62663086--62663284	41	4.9	41	91	1	310	30	30	20	19	1.97
62666045--62666169	31	3.9	31	85	8	135	38	8	22	30	1.84
62666383--62666541	60	2.7	59	77	1	156	32	23	26	17	1.97
62668022--62668109	35	2.5	34	78	8	97	19	27	28	25	1.99
62670483--62670517	18	1.9	18	88	0	52	20	8	20	51	1.73
62670765--62670808	20	2.3	18	84	7	52	36	0	4	59	1.18
62672412--62672478	31	2.3	29	82	10	82	20	10	0	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62686050--62686104	16	3.4	16	84	0	74	41	5	20	32	1.75
62694865--62694906	21	2.0	21	90	0	66	42	23	11	21	1.86
62704243--62704286	22	2.0	21	83	12	54	27	6	20	45	1.76
62705879--62705924	23	2.0	23	82	0	56	17	17	17	47	1.83
62711253--62711278	2	13.0	2	100	0	52	50	0	0	50	1.00
62724297--62724342	21	2.2	20	85	11	58	65	4	0	30	1.12
62730040--62730117	31	2.5	31	77	4	86	55	16	3	24	1.58
62756680--62756721	22	1.9	22	85	9	59	40	0	0	59	0.97
62757980--62758030	21	2.4	21	86	0	75	27	7	33	31	1.85
62762847--62762910	23	2.8	23	80	7	67	56	1	3	39	1.25
62771368--62771408	21	1.9	22	85	5	57	48	2	4	43	1.37
62789138--62789277	37	3.8	37	95	0	235	38	12	21	27	1.90
62789239--62789362	46	2.8	46	91	3	200	33	16	22	27	1.96
62793482--62793660	89	2.0	89	86	2	252	31	18	23	25	1.98
62793453--62793641	45	4.2	45	73	1	173	30	20	24	25	1.99
62793508--62793674	89	1.9	89	89	0	262	32	18	22	26	1.97
62793508--62793712	89	2.3	89	84	1	241	30	18	23	27	1.98
62810447--62810502	15	4.1	13	76	14	51	42	0	1	55	1.10
62810451--62810493	15	2.8	16	79	10	54	44	0	2	53	1.13
62810390--62810577	61	3.1	60	70	14	188	42	1	6	48	1.39
62810741--62810803	16	4.1	16	85	8	85	31	36	1	30	1.67
62811685--62811727	16	2.8	16	82	13	54	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62811685--62811736	15	3.5	15	82	10	54	53	1	0	44	1.11
62811689--62811913	120	1.9	123	95	2	411	48	6	1	42	1.39
62811782--62811867	42	2.0	42	82	10	104	53	2	1	43	1.21
62819514--62819546	12	2.9	11	91	8	57	57	6	0	36	1.23
62819511--62819554	11	3.9	11	85	5	52	59	4	0	36	1.18
62823323--62823615	79	3.6	83	78	9	300	27	8	24	39	1.84
62823314--62823909	299	2.0	300	81	8	696	28	7	24	40	1.81
62829002--62829032	15	2.1	15	93	0	53	45	25	6	22	1.76
62836433--62836469	18	2.0	19	94	5	67	62	0	0	37	0.96
62836439--62836479	18	2.3	18	82	0	55	73	0	0	26	0.84
62836433--62836567	48	2.8	47	75	17	132	61	0	2	35	1.11
62836444--62836558	41	2.9	40	76	11	128	60	0	3	35	1.13
62836495--62836519	9	2.8	9	100	0	50	60	0	0	40	0.97
62836539--62836566	8	3.5	8	100	0	56	78	0	0	21	0.75
62850719--62850747	14	2.1	14	100	0	58	41	0	6	51	1.28
62873133--62873160	5	5.6	5	100	0	56	78	0	21	0	0.75
62874168--62874234	21	3.2	20	76	12	55	65	1	2	29	1.16
62875803--62875934	56	2.4	56	88	2	158	45	3	4	46	1.38
62875841--62875930	26	3.3	26	66	22	76	47	1	6	44	1.36
62875823--62875938	56	2.1	57	98	1	225	44	1	5	48	1.35
62876159--62876267	9	11.4	9	70	17	53	39	3	0	56	1.17
62876192--62876269	30	2.7	30	90	9	119	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62876170--62876276	12	9.5	11	70	21	62	37	4	0	57	1.19
62876928--62876966	14	2.9	13	80	3	51	48	2	0	48	1.15
62886658--62886712	27	2.0	27	89	0	83	16	21	32	29	1.95
62887792--62887828	19	1.9	19	88	0	56	5	24	0	70	1.08
62902803--62902829	3	9.0	3	100	0	54	66	0	0	33	0.92
62903249--62903290	19	2.2	19	86	4	57	40	2	0	57	1.12
62911570--62911595	13	2.0	13	100	0	52	61	7	0	30	1.24
62916638--62916681	19	2.5	17	85	7	52	38	15	0	45	1.47
62916643--62916681	17	2.2	19	86	9	55	38	15	0	46	1.46
62923322--62923370	25	2.0	25	84	8	64	30	2	2	65	1.15
62925788--62925834	24	2.0	24	100	0	94	29	4	4	61	1.34
62926065--62926145	31	2.7	29	84	5	90	30	6	14	48	1.69
62927107--62927171	23	2.8	22	75	20	53	30	1	6	61	1.29
62929475--62929516	21	2.0	21	81	9	50	14	7	26	52	1.67
62932149--62932173	5	5.0	5	100	0	50	60	0	0	40	0.97
62937489--62937546	14	4.2	14	75	14	50	39	1	0	58	1.08
62941741--62941799	29	2.0	29	84	12	77	40	10	10	38	1.73
62943262--62943476	114	1.9	112	89	1	331	20	21	15	41	1.89
62955875--62955912	12	3.2	12	92	0	58	52	7	0	39	1.31
62955878--62955916	2	19.5	2	83	0	51	53	5	0	41	1.23
62958418--62958489	29	2.4	29	83	2	90	41	13	6	37	1.72
62958667--62958722	29	1.9	29	88	0	85	41	8	14	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62963784--62963822	18	2.2	18	100	0	78	48	15	0	35	1.45
62978416--62978514	42	2.4	42	77	6	110	14	19	18	48	1.81
62986132--62986380	50	4.8	50	85	4	284	20	29	24	26	1.99
62986131--62986380	100	2.4	104	88	6	357	20	29	24	26	1.99
62986474--62986506	13	2.5	13	95	0	57	54	12	0	33	1.37
62986718--62986775	30	1.9	30	89	0	89	31	24	3	41	1.71
62993726--62993974	50	4.8	50	85	4	284	20	28	24	26	1.99
62993725--62993974	100	2.4	104	87	6	348	20	28	24	26	1.99
62994069--62994100	13	2.5	13	94	0	55	56	12	0	31	1.37
62994312--62994369	30	1.9	30	89	0	89	31	24	3	41	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213