genome.fa.s14.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  159  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47645798--47647132	579	2.3	579	92	0	2175	29	23	15	30	1.95
47648424--47648488	28	2.3	28	85	15	89	16	21	0	61	1.34
47653285--47653337	22	2.3	23	83	6	63	54	0	9	35	1.33
47653750--47653802	3	17.0	3	81	14	63	60	0	5	33	1.20
47653750--47653802	16	3.4	16	84	10	65	60	0	5	33	1.20
47665442--47665790	47	7.3	47	90	2	500	32	9	29	28	1.88
47665912--47665990	37	2.1	37	90	0	122	24	18	31	25	1.98
47669142--47669239	27	3.7	26	83	6	115	27	11	30	30	1.91
47680412--47680450	19	2.1	19	95	0	69	38	20	2	38	1.66
47690799--47690853	21	2.5	23	77	14	62	41	1	23	32	1.65
47695290--47695355	27	2.4	27	87	0	87	27	15	25	31	1.95
47701992--47702042	25	2.0	26	88	11	79	52	1	5	39	1.37
47701993--47702057	27	2.5	26	73	9	60	49	3	9	38	1.51
47702747--47702788	20	2.2	19	87	8	59	9	16	7	66	1.42
47705278--47705320	13	3.2	13	77	6	50	25	2	13	58	1.48
47713430--47713500	29	2.4	29	100	0	142	52	15	11	21	1.74
47716472--47716561	5	18.2	5	87	6	130	36	0	2	61	1.09
47717375--47717418	3	14.7	3	85	0	52	36	0	2	61	1.09
47717377--47717434	27	2.1	27	90	6	91	39	0	3	56	1.16
47717375--47717434	18	3.3	18	74	4	50	38	0	3	58	1.15
47717383--47717434	21	2.5	21	83	0	59	40	0	3	55	1.18
47724537--47724965	47	9.1	47	92	0	633	31	9	31	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47725084--47725162	37	2.1	37	90	0	122	24	18	31	25	1.98
47727012--47727114	43	2.4	43	93	6	190	25	15	33	26	1.95
47727096--47727169	29	2.6	29	89	4	105	28	14	31	25	1.95
47727480--47727674	40	4.9	40	87	1	248	23	22	29	25	1.99
47731139--47731521	47	8.1	47	95	0	613	30	10	30	28	1.90
47731139--47731565	141	3.0	141	88	0	638	31	10	30	27	1.89
47731684--47731762	37	2.1	37	90	0	122	24	18	31	25	1.98
47736430--47736492	19	3.4	17	83	12	72	38	0	1	60	1.07
47736433--47736466	7	4.7	7	85	7	50	38	0	0	61	0.96
47736430--47736491	5	13.2	5	77	19	71	37	0	1	61	1.06
47737311--47737363	27	2.0	27	88	7	81	41	0	3	54	1.18
47740230--47740339	37	2.8	39	82	9	134	31	22	20	25	1.98
47741213--47741251	15	2.5	16	87	8	62	0	25	0	74	0.82
47742708--47742877	13	12.8	13	71	18	111	35	16	2	45	1.63
47742708--47742878	27	6.4	27	71	18	101	35	16	2	45	1.62
47742706--47742878	40	4.3	40	88	4	260	34	16	2	45	1.63
47745317--47745507	25	7.6	25	69	15	108	27	17	24	30	1.97
47745318--47745519	50	4.0	50	82	5	230	28	17	23	30	1.97
47750724--47750767	18	2.5	17	78	10	52	40	15	2	40	1.60
47757660--47757740	7	10.9	7	81	13	83	25	3	0	70	1.04
47757660--47757733	4	18.5	4	70	25	50	25	2	0	71	0.99
47757670--47757731	17	3.9	16	85	10	83	27	3	0	69	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47759372--47759407	15	2.5	14	91	8	63	50	0	5	44	1.25
47767789--47767827	20	1.9	21	94	5	71	43	0	0	56	0.99
47767803--47767834	12	2.7	12	95	0	55	43	0	0	56	0.99
47767791--47767923	61	2.2	59	81	10	164	44	3	2	49	1.32
47768471--47768522	25	2.1	25	100	0	104	42	3	15	38	1.65
47771129--47771167	19	2.1	19	90	0	60	46	10	15	28	1.78
47776400--47776522	40	3.2	39	71	15	112	20	22	24	32	1.98
47776423--47776546	35	3.4	35	74	12	124	20	22	22	34	1.97
47776380--47776659	75	3.7	75	85	1	348	22	20	21	36	1.95
47783188--47783286	47	2.1	47	90	0	153	19	13	22	45	1.84
47785255--47785414	42	3.8	42	76	6	144	17	25	16	41	1.89
47785258--47785414	84	1.9	84	81	5	192	17	25	16	40	1.90
47787861--47787893	16	2.1	16	100	0	66	72	12	0	15	1.12
47789862--47789892	15	2.1	15	100	0	62	22	32	6	38	1.80
47798031--47798087	26	2.2	26	81	12	64	43	22	19	14	1.86
47802143--47802181	13	2.7	14	84	15	53	76	2	5	15	1.06
47803384--47803471	39	2.3	39	86	2	124	42	3	6	47	1.47
47810068--47810148	41	1.9	43	90	5	130	67	0	1	30	0.98
47811321--47811381	13	4.6	14	82	11	67	39	18	0	42	1.50
47811306--47811390	40	2.1	40	82	4	100	37	18	1	42	1.58
47811334--47811402	27	2.6	25	82	13	84	33	20	0	46	1.51
47811334--47811402	13	5.2	13	82	6	68	33	20	0	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47811323--47811402	40	2.0	40	85	4	108	36	21	0	42	1.53
47817838--47817969	51	2.6	51	85	2	167	26	17	25	30	1.97
47817792--47817975	102	1.8	101	86	3	262	25	17	26	29	1.98
47822505--47822687	51	3.6	51	76	5	165	25	17	26	31	1.97
47822505--47822697	101	1.9	101	86	3	271	24	17	26	30	1.97
47827755--47827803	19	2.6	19	87	9	66	28	10	24	36	1.88
47827768--47827809	19	2.2	19	83	8	50	35	7	26	30	1.83
47835023--47835061	18	2.1	19	85	9	53	2	7	12	76	1.09
47838273--47838328	28	1.9	30	86	13	82	48	0	8	42	1.34
47838316--47838358	6	7.2	6	86	0	50	69	0	6	23	1.12
47838316--47838358	15	2.9	15	92	0	68	69	0	6	23	1.12
47839317--47839428	44	2.5	44	82	2	136	29	21	18	30	1.97
47839503--47840126	169	3.7	169	92	1	1018	26	27	17	28	1.97
47840160--47840263	34	3.0	34	84	4	109	29	24	20	25	1.99
47840245--47840392	44	3.4	43	89	3	208	31	23	20	25	1.98
47842648--47842678	12	2.6	12	100	0	62	0	12	0	87	0.55
47848200--47848238	9	3.8	10	86	13	53	79	7	0	12	0.93
47848671--47848728	28	2.0	31	86	10	86	48	0	8	43	1.34
47848712--47848742	3	10.3	3	100	0	62	67	0	0	32	0.91
47850154--47850178	13	1.9	13	100	0	50	64	0	4	32	1.12
47850200--47850224	12	2.1	12	100	0	50	76	0	16	8	1.02
47854969--47855008	21	1.9	21	85	10	55	42	0	5	52	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47855647--47855691	23	2.0	23	100	0	90	66	0	6	26	1.16
47855925--47855952	2	14.0	2	100	0	56	0	50	0	50	1.00
47866609--47866651	14	3.2	13	84	12	52	55	2	2	39	1.25
47869928--47869961	17	2.1	17	88	5	52	50	0	17	32	1.47
47875768--47875803	10	3.7	10	85	7	56	77	11	0	11	0.99
47875847--47875918	27	2.7	27	75	0	81	26	30	31	11	1.91
47876332--47876458	41	3.1	42	67	21	108	62	7	4	24	1.41
47876350--47876500	30	5.4	30	78	16	157	62	7	5	23	1.43
47876373--47876435	12	4.8	12	76	18	54	68	6	1	23	1.22
47876371--47876427	16	3.6	16	81	11	73	66	8	1	22	1.29
47876440--47876490	16	3.3	16	71	20	54	54	11	7	25	1.63
47876693--47876757	27	2.4	27	89	0	94	7	35	30	26	1.84
47876808--47876855	11	4.6	10	80	15	53	16	0	10	72	1.10
47898006--47898244	50	4.7	50	79	7	180	28	18	28	24	1.98
47905737--47906045	157	2.0	156	92	0	519	47	5	3	43	1.42
47906175--47906242	16	4.2	16	94	0	118	38	33	0	27	1.57
47915583--47915678	49	2.0	49	85	0	129	40	10	16	32	1.83
47918493--47918544	23	2.3	23	80	9	63	36	13	11	38	1.81
47919058--47919106	16	3.1	16	77	16	57	26	22	36	14	1.92
47919636--47919678	3	14.3	3	100	0	86	34	0	0	65	0.93
47920273--47920329	29	1.9	29	82	3	69	38	3	8	49	1.51
47921024--47921066	14	3.1	15	83	12	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47924219--47924418	99	2.0	99	98	0	382	38	13	15	32	1.86
47925432--47925466	18	2.0	18	88	5	54	25	2	0	71	1.00
47926753--47926795	2	21.5	2	95	0	77	48	0	48	2	1.14
47928578--47928619	12	3.1	13	83	16	50	59	0	40	0	0.97
47928576--47928618	8	6.1	7	92	7	54	58	0	41	0	0.98
47928785--47928828	6	7.3	6	92	7	72	0	13	0	86	0.57
47930989--47931158	38	4.5	38	88	2	236	30	19	16	34	1.94
47930989--47931158	76	2.2	76	90	2	261	30	19	16	34	1.94
47932194--47932222	4	7.2	4	100	0	58	27	0	0	72	0.85
47940115--47940277	5	31.0	5	78	9	164	35	20	2	41	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213