genome.fa.s14.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  120  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34386158--34386309	27	5.7	26	76	11	130	27	8	22	41	1.83
34386159--34386309	53	2.8	52	83	6	169	27	8	22	41	1.83
34386291--34386372	27	3.0	27	83	0	110	36	8	15	39	1.78
34388236--34388279	20	2.2	20	84	8	54	56	9	4	29	1.50
34390587--34390642	27	2.1	27	90	6	87	33	23	23	19	1.97
34391108--34391314	27	7.7	27	75	9	111	30	8	19	41	1.82
34391173--34391321	54	2.8	54	77	8	151	34	8	17	40	1.79
34391110--34391314	81	2.5	80	77	6	200	30	8	19	41	1.81
34391243--34391324	27	3.0	27	85	7	121	37	6	15	40	1.73
34402721--34402779	22	2.7	22	89	0	82	11	18	30	38	1.87
34404608--34404695	39	2.3	39	89	0	131	34	28	19	18	1.95
34404742--34405387	41	15.9	41	87	3	815	19	22	30	27	1.98
34404742--34405386	163	4.0	162	88	4	858	19	22	30	27	1.98
34405506--34405534	15	1.9	15	100	0	58	20	0	34	44	1.52
34405500--34405659	7	22.7	7	75	13	69	20	0	37	41	1.57
34407192--34407294	29	3.5	29	68	15	84	11	13	7	66	1.43
34407189--34407304	60	2.0	58	88	6	171	12	12	7	67	1.42
34410063--34410251	43	4.5	43	78	9	187	25	17	24	31	1.97
34413023--34413047	9	2.8	9	100	0	50	44	12	0	44	1.41
34418450--34418514	13	5.1	13	74	10	71	36	30	6	26	1.81
34418450--34418514	25	2.5	26	80	11	89	36	30	6	26	1.81
34423667--34423721	27	2.0	27	85	0	74	36	5	0	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34423798--34423840	21	2.0	21	81	0	50	39	4	4	51	1.44
34429786--34430013	43	5.3	43	89	3	318	29	21	22	26	1.99
34429786--34430057	85	3.2	85	82	7	318	29	21	22	26	1.99
34429794--34430057	128	2.1	128	82	7	313	30	21	21	25	1.98
34430490--34430537	21	2.3	21	85	7	62	4	43	16	35	1.67
34432890--34433046	80	2.0	80	88	5	237	33	22	17	26	1.96
34432890--34433030	40	3.5	40	94	0	255	32	23	17	26	1.96
34435975--34436115	50	2.8	50	80	6	162	31	24	17	26	1.97
34440854--34440883	11	2.7	11	94	0	51	40	6	3	50	1.45
34440889--34440928	17	2.4	17	100	0	80	35	7	27	30	1.84
34442405--34442545	44	3.2	43	82	8	151	39	22	5	32	1.78
34443287--34443383	44	2.2	44	80	3	108	27	26	17	27	1.98
34450253--34450324	27	2.7	27	78	6	76	33	18	15	33	1.92
34463870--34463898	15	1.9	15	100	0	58	44	0	0	55	0.99
34468217--34468276	24	2.5	24	84	10	79	68	0	1	30	0.99
34473881--34473928	19	2.5	19	96	0	87	60	4	18	16	1.51
34474015--34474092	18	4.3	18	86	0	93	61	1	21	15	1.41
34474022--34474093	6	12.0	6	89	0	81	61	1	22	15	1.42
34474240--34474312	26	2.8	26	87	2	94	41	12	16	30	1.85
34486723--34486752	16	1.9	16	93	6	53	50	20	0	30	1.49
34502157--34502189	17	1.9	17	93	0	57	15	6	15	63	1.49
34506401--34506471	35	2.0	35	100	0	142	39	8	2	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34539246--34539358	1	113.0	1	89	0	172	4	0	0	94	0.33
34540883--34541037	28	5.5	28	91	2	222	32	25	12	28	1.93
34548976--34549157	28	6.5	28	92	1	285	33	26	12	27	1.92
34550151--34550353	46	4.3	48	87	7	256	35	13	21	28	1.92
34550085--34550353	98	2.7	98	92	0	448	34	14	22	28	1.93
34550317--34550462	37	4.0	37	93	1	242	36	16	21	24	1.94
34555523--34555601	40	2.0	40	94	0	140	30	11	12	45	1.77
34558134--34558178	20	2.3	19	85	11	56	24	24	11	40	1.87
34563624--34563757	6	22.0	6	70	8	92	73	2	17	7	1.17
34565549--34565616	20	3.4	20	83	0	91	25	32	19	23	1.97
34574229--34574269	17	2.4	18	80	8	50	14	24	4	56	1.58
34578248--34578273	13	2.0	13	100	0	52	61	7	15	15	1.55
34581922--34582030	52	2.1	50	81	6	121	33	14	18	33	1.91
34581923--34582053	50	2.6	52	75	6	124	35	13	16	34	1.89
34587356--34587531	27	6.5	27	84	3	192	29	27	15	27	1.96
34587377--34587531	82	1.9	81	86	4	222	29	27	15	27	1.96
34595260--34595437	27	6.6	27	83	3	196	29	28	15	27	1.96
34595281--34595436	82	1.9	81	86	3	224	28	28	15	27	1.96
34597073--34597147	24	3.3	22	72	24	66	41	14	14	29	1.86
34633199--34633412	79	2.7	81	78	11	212	24	27	21	26	1.99
34633232--34633412	40	4.6	40	82	6	208	24	28	22	24	1.99
34641150--34641333	79	2.3	81	81	8	209	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34641131--34641333	39	5.1	40	78	9	211	24	27	22	25	2.00
34644390--34644566	47	3.8	46	77	15	193	20	19	29	29	1.97
34644387--34644559	94	1.8	93	92	3	294	20	20	30	28	1.98
34646088--34646310	40	5.6	40	93	3	371	26	27	23	22	2.00
34646088--34646310	79	2.8	79	93	2	360	26	27	23	22	2.00
34646088--34646310	119	1.9	119	91	3	369	26	27	23	22	2.00
34647433--34647557	53	2.3	54	91	4	198	15	22	10	52	1.73
34650567--34650868	45	6.7	45	73	9	186	23	30	18	27	1.98
34650613--34650892	89	3.1	88	84	8	368	23	28	19	27	1.98
34650613--34650892	45	6.2	46	75	6	263	23	28	19	27	1.98
34650613--34650950	180	1.9	180	85	3	466	24	27	19	27	1.99
34665168--34665243	26	2.9	26	94	0	125	28	17	11	42	1.84
34665492--34665524	10	3.3	10	87	12	50	21	24	0	54	1.45
34667865--34668361	257	1.9	257	88	0	742	24	20	14	40	1.90
34675748--34675925	27	6.6	27	82	3	178	29	28	15	26	1.96
34675769--34675924	82	1.9	81	86	3	224	28	28	16	26	1.97
34675748--34675924	54	3.3	54	81	6	196	29	28	15	26	1.96
34677838--34677896	22	2.7	22	79	7	57	38	18	5	37	1.73
34682660--34682718	22	2.7	22	79	7	57	38	18	5	37	1.73
34684001--34684031	11	2.7	11	95	5	53	9	51	9	29	1.66
34696875--34696906	16	1.9	16	93	6	55	46	3	0	50	1.17
34698578--34698609	15	2.1	15	94	0	55	75	9	0	15	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34701693--34701823	40	3.3	40	88	2	192	24	20	26	28	1.99
34701693--34701860	40	4.2	38	80	9	158	25	20	26	27	1.99
34709594--34709724	40	3.3	40	84	2	174	25	19	25	28	1.99
34712837--34712946	53	2.1	52	83	6	141	40	15	22	20	1.90
34720199--34720401	53	3.8	54	75	4	203	37	18	22	20	1.94
34722237--34722329	34	2.8	34	83	4	109	26	24	22	25	2.00
34728248--34728316	35	2.0	35	94	0	120	34	14	17	33	1.90
34738042--34738088	23	2.0	23	95	0	85	23	10	29	36	1.89
34740564--34740728	43	3.9	42	80	6	170	22	18	27	32	1.97
34752154--34752262	37	2.9	37	93	0	173	27	30	18	23	1.98
34762673--34762732	20	3.0	20	78	9	77	36	18	30	15	1.91
34767783--34768046	40	6.7	40	84	6	261	25	20	27	26	1.99
34767783--34768046	79	3.3	78	82	4	280	25	20	27	26	1.99
34767899--34768079	79	2.3	79	81	4	206	25	20	27	25	1.99
34769475--34769592	45	2.6	45	86	0	155	17	19	18	44	1.88
34774399--34774456	21	2.5	25	76	15	63	55	12	1	31	1.47
34774626--34774673	20	2.4	20	75	0	51	31	18	8	41	1.80
34774752--34774825	24	3.0	25	76	7	71	44	9	0	45	1.36
34775215--34775305	43	2.1	43	81	4	103	25	20	18	35	1.96
34775232--34775350	43	2.8	43	80	0	130	26	18	20	34	1.96
34775623--34775756	66	2.0	65	85	5	180	11	25	20	42	1.85
34781634--34781734	28	3.5	29	67	19	86	47	3	4	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34781528--34781898	59	6.4	59	86	1	454	45	4	5	44	1.48
34781544--34781898	117	3.1	118	90	2	531	45	4	5	44	1.47
34781563--34781898	176	1.9	173	87	3	485	45	4	5	44	1.45
34795013--34795046	17	2.0	17	88	0	50	52	14	0	32	1.42
34799163--34799449	149	1.9	149	93	0	493	42	16	10	31	1.81
34800960--34801004	22	2.0	22	82	0	54	73	8	2	15	1.18
34804301--34804468	40	4.2	40	82	8	148	27	27	20	24	1.99
34804336--34804521	80	2.3	80	83	9	229	27	27	20	23	1.99
34804338--34804521	40	4.6	40	83	7	205	27	27	21	23	1.99
34812224--34812352	40	3.3	38	82	8	161	27	27	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213