genome.fa.s14.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  137  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40681320--40681408	18	4.8	18	69	17	56	10	23	1	65	1.30
40691343--40691368	13	2.0	13	100	0	52	46	7	0	46	1.31
40691758--40691796	20	1.9	21	89	5	62	35	12	28	23	1.91
40695796--40695839	12	3.6	12	93	3	70	77	2	6	13	1.07
40695796--40695843	13	3.8	13	88	2	71	72	2	8	16	1.18
40699181--40699352	40	4.3	40	86	2	213	25	20	27	26	1.99
40699181--40699352	79	2.2	79	84	3	220	25	20	27	26	1.99
40707119--40707290	79	2.2	79	84	3	220	25	21	27	25	1.99
40707066--40707288	40	5.6	39	81	8	209	25	21	27	25	1.99
40707146--40707323	79	2.2	80	80	3	191	25	21	28	24	1.99
40712502--40712531	15	2.0	15	93	0	51	20	20	16	43	1.88
40715872--40715904	15	2.1	16	88	5	50	60	36	3	0	1.12
40717992--40718026	12	2.8	12	91	4	52	31	8	0	60	1.27
40743545--40743588	23	1.9	22	82	17	54	36	25	0	38	1.56
40743635--40743720	45	1.9	45	90	4	138	34	23	12	29	1.92
40743722--40743917	51	3.9	51	78	6	227	30	27	17	24	1.97
40743728--40743913	101	1.9	100	86	5	259	31	26	17	24	1.97
40748267--40748304	20	1.9	20	94	0	67	52	0	5	42	1.24
40753436--40753482	11	4.5	11	82	12	64	34	2	17	46	1.59
40753437--40753482	20	2.2	21	88	7	76	32	2	17	47	1.60
40758793--40759080	75	3.8	75	86	1	407	21	17	27	33	1.96
40763755--40763816	32	1.9	32	90	0	97	40	20	11	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40766420--40788439	617	35.2	618	76	10	15835	27	17	22	32	1.96
40775140--40781766	618	10.8	602	86	5	7509	26	17	23	32	1.96
40788568--40790532	989	2.0	984	85	2	2674	28	18	22	31	1.97
40789564--40792456	614	4.7	616	92	1	4398	27	17	22	33	1.96
40792585--40794546	988	2.0	982	85	3	2643	27	18	22	31	1.97
40793568--40795857	618	3.7	618	89	1	3291	27	17	22	32	1.96
40795380--40796909	561	2.7	560	81	6	1643	27	18	23	30	1.97
40798508--40805494	618	11.3	618	93	0	11794	27	17	21	33	1.96
40806327--40807060	375	2.0	375	86	3	1021	29	18	22	29	1.97
40806695--40820610	617	22.5	617	89	1	19801	27	17	22	32	1.96
40814379--40814426	25	1.9	25	91	0	78	22	25	16	35	1.95
40820919--40823943	618	4.9	617	88	1	4222	27	17	22	32	1.96
40823943--40828742	619	7.8	618	93	0	7605	28	17	22	31	1.97
40829885--40829973	27	3.3	27	85	4	99	40	16	19	23	1.91
40830310--40830370	28	2.2	28	94	2	106	22	24	24	27	2.00
40830302--40830398	28	3.1	31	74	21	85	23	23	25	26	2.00
40843289--40843388	28	3.5	28	84	4	139	29	23	23	25	1.99
40843737--40843922	27	6.9	27	90	3	268	22	18	16	42	1.89
40846766--40846899	24	5.6	24	80	0	115	26	6	22	44	1.77
40847069--40847176	32	3.4	32	75	6	85	20	22	21	36	1.96
40850406--40850614	40	5.3	40	91	2	271	25	20	27	26	1.99
40850353--40850614	119	2.2	120	81	5	300	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40850406--40850649	79	3.1	80	82	5	221	26	20	27	25	1.99
40850354--40850649	119	2.5	119	79	7	273	26	20	27	25	1.99
40857977--40858186	40	5.3	40	91	1	271	25	20	27	26	1.99
40857924--40858186	120	2.2	120	81	4	300	25	20	27	26	1.99
40860310--40860366	20	2.9	19	82	7	78	29	17	28	24	1.97
40862294--40862337	21	2.1	21	83	8	54	25	9	2	63	1.35
40867801--40867936	40	3.5	38	75	6	128	40	19	22	17	1.91
40867808--40867956	78	1.9	79	84	2	201	39	18	23	18	1.92
40875425--40875613	50	3.6	51	84	5	211	26	20	28	24	1.99
40880165--40880247	41	2.0	41	90	0	130	28	30	18	22	1.97
40880232--40880325	25	3.8	25	78	0	107	29	23	21	25	1.99
40889856--40890037	28	6.5	28	92	1	276	33	26	12	28	1.92
40893529--40893554	5	5.2	5	100	0	52	19	0	0	80	0.71
40900644--40900704	20	3.0	20	80	0	77	19	26	21	32	1.97
40900637--40900745	40	2.7	39	78	4	110	19	23	18	38	1.93
40901084--40901122	20	1.9	20	89	5	60	33	10	10	46	1.72
40905954--40906012	21	2.8	21	78	0	64	30	28	27	13	1.94
40906219--40906301	30	2.8	30	87	1	114	20	38	26	14	1.91
40908775--40909348	285	2.0	286	95	1	1026	36	14	15	34	1.87
40916309--40916346	19	2.0	19	94	0	67	39	5	13	42	1.66
40916371--40916465	41	2.3	41	90	3	147	30	3	14	51	1.58
40923792--40923818	13	2.1	13	100	0	54	33	14	22	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40928572--40928609	20	2.0	20	90	10	62	55	10	0	34	1.34
40935109--40935299	91	2.1	89	88	2	276	37	21	11	29	1.89
40935760--40935951	97	2.0	96	87	3	280	37	8	19	33	1.83
40938689--40938736	18	2.8	17	75	12	53	54	2	0	43	1.12
40938670--40938736	34	1.9	36	84	6	93	53	4	1	40	1.30
40940680--40940710	9	3.4	9	90	0	53	25	12	22	38	1.90
40948798--40948918	42	2.9	42	76	2	109	42	18	21	17	1.89
40953583--40953636	27	2.0	28	82	10	67	44	7	0	48	1.31
40965682--40965753	36	2.0	36	100	0	144	22	27	16	33	1.95
40968818--40968847	15	2.0	15	100	0	60	46	13	13	26	1.80
40968868--40968917	22	2.3	20	83	10	64	72	10	0	18	1.12
40971558--40971636	37	2.1	37	88	4	115	24	29	20	26	1.99
40971755--40972290	47	11.4	47	94	0	901	29	30	8	31	1.87
40975773--40975818	20	2.3	20	88	0	65	15	34	19	30	1.93
40975789--40975919	40	3.3	40	77	6	131	11	30	21	36	1.89
40975762--40975836	20	3.8	20	71	7	62	14	36	21	28	1.93
40977854--40977968	61	1.9	60	83	7	151	43	4	3	48	1.39
40980501--40980585	9	9.4	9	88	0	125	43	23	8	24	1.81
40992256--40992439	101	1.8	101	85	4	264	25	17	25	30	1.97
41005190--41005319	68	1.9	71	85	4	185	42	3	3	51	1.33
41006112--41006136	13	1.9	13	100	0	50	32	8	20	40	1.81
41016641--41016864	50	4.5	48	72	13	145	22	27	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41016882--41017013	63	2.1	63	100	0	264	23	23	14	38	1.91
41018851--41019135	138	2.1	138	92	0	471	46	6	8	39	1.59
41021696--41021809	27	4.2	27	71	4	95	15	21	23	38	1.92
41032478--41032507	14	2.1	14	100	0	60	53	6	26	13	1.64
41034547--41034593	3	15.7	3	100	0	94	34	0	34	31	1.58
41040689--41040713	11	2.3	11	100	0	50	68	24	0	8	1.16
41053886--41054097	40	5.3	39	83	5	264	27	28	20	23	1.99
41053886--41054097	80	2.7	80	91	0	345	27	28	20	23	1.99
41055983--41056034	21	2.5	21	81	12	63	30	7	19	42	1.79
41089257--41089287	16	1.9	16	100	0	62	41	6	12	38	1.69
41089293--41089342	16	3.1	16	77	11	57	40	6	12	42	1.67
41089257--41089360	55	1.9	55	89	0	163	39	6	12	41	1.69
41092940--41092977	6	6.3	6	91	8	60	31	0	15	52	1.43
41100265--41100305	21	1.9	22	85	14	59	31	7	34	26	1.84
41104901--41104954	27	2.0	27	100	0	108	55	14	14	14	1.70
41106214--41106267	23	2.6	21	83	13	67	38	7	14	38	1.75
41108436--41108469	16	2.1	16	94	0	59	20	5	20	52	1.67
41108478--41108605	9	13.3	9	73	16	80	32	1	2	63	1.17
41108496--41108605	57	1.9	57	92	0	184	30	1	2	65	1.17
41108478--41108610	10	13.6	10	74	12	80	33	1	2	63	1.16
41109737--41109768	16	2.0	16	93	0	55	65	12	0	21	1.25
41111209--41111251	20	2.1	20	86	4	59	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41111251--41111292	19	2.2	19	95	0	75	54	4	2	38	1.34
41112540--41112605	13	5.5	13	72	20	54	45	18	0	36	1.49
41112538--41112614	23	3.3	23	81	0	100	45	16	0	37	1.48
41117865--41117927	23	2.7	23	90	0	90	44	19	1	34	1.60
41127136--41127191	20	2.8	20	88	0	94	51	21	0	26	1.48
41141959--41142016	29	1.9	31	86	6	84	70	13	3	12	1.28
41144007--41144040	11	3.1	11	91	0	59	17	32	2	47	1.63
41144003--41144056	22	2.5	22	83	16	69	22	29	1	46	1.62
41146152--41146589	125	3.5	125	91	2	700	28	21	17	31	1.96
41157639--41157803	83	2.0	84	95	1	296	29	16	8	45	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213