genome.fa.s14.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  154  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46227712--46227756	19	2.4	19	76	0	54	62	0	0	37	0.96
46227690--46227774	29	2.9	29	75	3	80	63	0	2	34	1.07
46228068--46228110	20	2.2	20	91	8	70	23	4	0	72	1.04
46228068--46228110	19	2.2	19	91	4	68	23	4	0	72	1.04
46231225--46231461	43	5.5	43	79	6	237	30	29	19	20	1.97
46231233--46231455	87	2.6	86	83	5	254	30	29	19	21	1.97
46235406--46235452	17	2.8	17	87	3	60	34	46	0	19	1.50
46235709--46236172	113	4.1	114	85	3	632	26	26	21	25	2.00
46236067--46236239	71	2.4	72	88	4	242	24	27	23	24	2.00
46235952--46236356	186	2.2	187	88	3	593	25	26	22	26	2.00
46236138--46236467	114	2.9	114	87	0	462	26	25	21	26	1.99
46235846--46236539	300	2.3	300	86	3	961	26	25	21	27	1.99
46236371--46236616	73	3.4	73	90	1	368	28	22	19	29	1.98
46236253--46236730	259	1.8	259	87	0	706	28	23	20	28	1.99
46236067--46236838	373	2.1	372	83	2	983	27	23	21	27	1.99
46236525--46236838	114	2.8	113	86	1	412	29	22	20	27	1.98
46245024--46245065	20	2.1	20	86	0	57	47	0	7	45	1.30
46246004--46246081	32	2.5	32	81	6	88	26	33	17	21	1.96
46257472--46257978	255	2.0	255	96	1	937	27	19	22	30	1.98
46264894--46264992	28	3.6	27	84	11	112	28	28	12	31	1.92
46268936--46269057	45	2.7	45	78	5	122	40	15	20	22	1.90
46269342--46269406	27	2.4	27	75	14	71	32	16	26	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46274681--46274705	13	1.9	13	100	0	50	36	16	0	48	1.46
46275039--46275111	30	2.4	30	78	13	78	28	23	5	42	1.76
46277522--46277564	20	2.0	22	86	8	63	58	2	0	39	1.11
46279358--46279507	50	3.0	49	75	3	131	24	20	22	33	1.97
46279552--46279870	175	1.8	173	86	2	460	31	19	16	32	1.94
46293956--46294003	25	1.9	25	86	0	69	45	8	0	45	1.33
46294035--46294066	14	2.3	15	89	10	50	18	37	0	43	1.51
46304021--46304054	17	2.0	17	88	0	50	35	0	0	64	0.94
46305456--46305484	13	2.1	14	93	6	51	41	0	0	58	0.98
46307220--46307261	17	2.3	19	88	12	70	28	11	21	38	1.89
46308287--46308460	91	1.9	92	95	1	314	31	14	21	32	1.94
46314252--46314489	121	2.0	114	87	7	334	21	19	18	41	1.90
46316311--46316336	12	2.2	12	100	0	52	7	38	23	30	1.83
46319185--46319319	18	8.0	17	69	19	86	39	0	2	57	1.19
46319464--46319569	44	2.5	41	73	18	108	34	29	3	32	1.75
46319477--46319569	44	2.1	46	89	4	145	36	29	4	30	1.77
46319549--46319620	32	2.2	32	87	0	99	26	29	2	41	1.70
46319549--46319620	16	4.5	16	83	0	81	26	29	2	41	1.70
46320281--46320322	22	1.9	22	90	0	66	21	0	11	66	1.23
46320347--46320627	116	2.4	114	83	5	334	22	2	14	60	1.46
46320725--46320779	22	2.5	22	79	8	58	30	0	5	63	1.17
46325111--46325157	25	1.9	25	95	4	87	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46325521--46325555	17	2.1	17	89	5	54	42	0	0	57	0.99
46332356--46332388	7	4.7	7	88	11	50	72	0	15	12	1.12
46332361--46332387	13	2.1	13	100	0	54	70	0	14	14	1.17
46332355--46332395	13	2.9	15	79	20	52	75	0	12	12	1.05
46333598--46333961	131	2.8	131	94	0	629	28	22	24	24	1.99
46333994--46334566	142	4.0	142	95	0	1011	33	17	20	27	1.96
46334138--46334558	44	9.1	44	73	16	311	33	17	21	27	1.96
46334043--46334509	98	4.9	94	70	19	310	32	17	21	28	1.96
46338792--46338843	18	2.9	19	88	11	83	44	11	13	30	1.79
46338801--46338892	19	4.8	18	72	27	66	39	7	17	35	1.78
46338808--46338895	41	2.1	42	87	4	126	36	6	15	40	1.74
46339029--46339065	18	2.1	18	89	0	56	43	10	10	35	1.75
46339360--46339384	12	2.1	12	100	0	50	0	16	0	84	0.63
46339700--46339767	4	17.8	4	76	14	72	0	26	0	73	0.83
46339694--46339764	23	3.1	22	82	13	90	0	25	0	74	0.82
46339692--46339764	8	9.4	8	74	3	51	0	24	0	75	0.81
46339694--46339767	27	2.8	25	80	13	85	0	25	0	74	0.82
46339866--46339923	20	2.9	21	85	10	68	3	13	5	77	1.07
46339882--46339931	27	1.9	27	88	8	77	6	12	6	76	1.16
46339869--46339924	21	2.7	19	81	13	58	3	14	5	76	1.09
46340252--46340347	30	3.2	30	88	8	142	41	3	22	32	1.70
46340526--46342358	76	23.8	77	87	4	2169	34	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46340526--46342358	153	11.9	153	85	6	1982	34	20	16	28	1.94
46343207--46343253	17	2.9	16	80	20	53	6	10	4	78	1.06
46343221--46343272	9	5.6	9	77	8	59	7	11	1	78	1.02
46343214--46343272	19	3.1	19	80	17	61	6	10	3	79	1.03
46343221--46343272	10	5.4	10	79	9	63	7	11	1	78	1.02
46348118--46348282	67	2.5	67	96	0	303	32	21	25	21	1.98
46349034--46349136	18	5.8	18	78	17	117	46	10	10	32	1.73
46349034--46349171	17	7.6	17	76	18	120	44	10	10	34	1.75
46349029--46349143	52	2.2	52	90	4	178	46	9	11	33	1.72
46349067--46349190	40	3.3	39	86	9	161	41	9	12	36	1.75
46349119--46349189	21	3.5	21	75	14	85	38	8	14	39	1.76
46349312--46349354	18	2.3	18	88	4	59	41	9	9	39	1.69
46350000--46350034	13	2.7	13	81	0	52	0	31	0	68	0.90
46350029--46350086	16	3.7	16	75	11	57	3	22	0	74	0.97
46350027--46350086	31	1.9	31	86	6	86	3	21	0	75	0.95
46350013--46350091	24	3.3	24	75	21	76	2	25	0	72	0.98
46350189--46350251	20	3.2	19	78	10	72	0	17	6	76	0.99
46350578--46350666	30	3.0	30	77	0	97	41	5	21	31	1.76
46353091--46353195	40	2.6	40	83	5	124	30	21	20	26	1.98
46353131--46353313	99	1.9	98	83	5	244	31	21	20	26	1.98
46353809--46354008	14	13.5	14	72	15	100	23	1	29	46	1.61
46353893--46354091	7	27.9	7	68	11	64	21	1	33	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46353843--46354017	86	2.0	87	88	1	262	22	2	29	45	1.65
46353877--46354007	29	4.6	29	74	9	115	22	0	32	45	1.58
46354603--46355037	115	3.8	113	79	4	397	25	14	22	37	1.92
46354624--46355078	230	2.0	228	80	4	504	26	14	22	36	1.93
46355492--46355530	20	2.0	20	84	0	51	10	12	28	48	1.74
46356985--46357055	35	2.0	36	83	5	90	39	4	5	50	1.45
46357201--46357332	18	7.0	20	68	20	65	42	18	0	38	1.51
46357183--46357425	56	4.5	55	87	10	360	44	18	0	37	1.50
46357204--46357469	56	5.4	48	78	16	260	43	17	0	37	1.55
46357183--46357425	103	2.3	109	89	7	365	44	18	0	37	1.50
46363217--46363262	23	2.0	23	95	0	83	15	13	28	43	1.83
46363299--46363447	43	3.5	43	76	3	158	27	22	20	30	1.98
46368587--46368621	17	2.0	18	88	5	54	57	8	25	8	1.57
46370087--46370169	39	2.1	39	95	0	148	30	16	14	38	1.89
46371084--46371159	21	3.7	21	92	3	120	36	9	14	39	1.78
46371661--46371704	17	2.6	17	85	3	63	38	11	2	47	1.52
46371867--46371924	31	1.9	31	89	3	91	34	3	3	58	1.32
46371865--46371944	28	2.8	27	79	5	70	33	3	5	57	1.38
46376326--46376557	44	5.3	44	63	4	117	26	25	24	24	2.00
46376431--46376567	45	3.1	45	62	8	109	28	27	23	21	1.99
46376277--46376667	88	4.4	88	90	0	602	28	26	23	21	1.99
46377119--46377240	44	2.8	44	82	2	138	32	17	20	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46377674--46377792	19	5.8	19	80	12	121	36	7	15	40	1.76
46377725--46377792	21	3.0	24	83	8	72	36	7	16	39	1.76
46378064--46378123	20	2.9	20	76	14	59	26	1	6	65	1.27
46378286--46378320	17	2.1	17	88	0	52	40	11	0	48	1.39
46378486--46378542	30	1.9	30	85	7	80	35	5	3	56	1.39
46380516--46381144	70	9.0	70	78	1	528	24	18	26	30	1.98
46380485--46381146	140	4.7	140	77	1	603	25	18	25	30	1.98
46383425--46383811	47	8.2	47	92	2	623	31	8	30	28	1.87
46383425--46383811	93	4.1	94	92	2	623	31	8	30	28	1.87
46385857--46386045	43	4.4	43	99	0	360	23	14	34	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213