genome.fa.s14.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  108  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30551518--30551829	86	3.6	86	81	2	340	25	18	26	28	1.98
30555251--30555476	29	7.7	29	71	7	179	23	27	14	34	1.93
30555251--30555473	59	3.8	59	75	10	181	24	27	13	34	1.93
30555251--30555464	87	2.4	87	92	1	338	24	28	12	34	1.92
30559806--30559852	20	2.3	20	96	0	85	53	0	25	21	1.46
30560203--30560297	42	2.3	42	100	0	190	24	7	24	44	1.79
30560768--30560875	42	2.6	42	86	0	144	22	24	32	21	1.98
30563741--30563861	29	4.1	29	80	5	118	38	14	23	22	1.92
30567988--30568043	28	2.0	28	100	0	112	39	3	14	42	1.63
30568279--30568932	92	7.1	92	88	1	893	31	6	18	43	1.76
30568204--30568958	31	24.7	31	74	11	391	31	7	17	43	1.76
30573381--30573558	27	6.6	27	83	3	196	25	15	28	29	1.96
30573385--30573537	82	1.9	81	87	4	227	25	15	28	30	1.96
30573378--30573558	82	2.2	81	81	2	220	25	16	28	29	1.96
30577785--30577838	24	2.2	25	78	15	67	29	5	14	50	1.66
30577809--30578504	61	11.4	60	72	9	358	32	6	16	43	1.75
30577839--30578461	31	20.4	31	71	10	415	33	6	16	43	1.75
30577839--30578461	92	6.8	92	85	2	745	33	6	16	43	1.75
30577829--30578397	275	2.1	276	87	1	809	33	6	16	44	1.73
30577815--30578461	275	2.3	272	82	4	794	32	6	16	43	1.75
30578220--30578498	31	9.1	31	73	8	133	32	8	16	42	1.78
30579617--30579667	26	2.0	26	92	0	84	23	9	23	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30582064--30582285	39	5.7	40	84	9	248	25	22	27	24	2.00
30582064--30582258	79	2.5	81	84	9	260	26	22	27	24	2.00
30582064--30582285	118	1.9	118	81	12	269	25	22	27	24	2.00
30582116--30582285	79	2.2	78	86	7	229	25	22	27	25	2.00
30582116--30582318	79	2.6	79	82	9	195	26	21	27	24	1.99
30588926--30589186	39	6.7	40	86	8	319	25	22	27	24	2.00
30591485--30591530	22	2.1	22	87	0	65	39	13	15	32	1.85
30596752--30596785	14	2.4	14	90	0	50	52	0	23	23	1.47
30599052--30599161	33	3.3	33	78	6	123	15	8	32	43	1.76
30607813--30607857	24	2.0	24	86	8	67	35	4	0	60	1.17
30607998--30608036	16	2.5	15	87	4	51	0	12	5	82	0.83
30607998--30608036	5	7.6	5	85	5	51	0	12	5	82	0.83
30621146--30621184	20	1.9	21	89	5	62	43	0	12	43	1.42
30622652--30622691	17	2.2	18	86	8	55	57	5	17	20	1.58
30623119--30623157	21	1.9	20	89	5	60	41	0	0	58	0.98
30623117--30623164	21	2.3	21	75	7	53	45	0	0	54	0.99
30623160--30623205	17	2.8	17	75	15	51	34	0	0	65	0.93
30623128--30623212	29	2.8	31	77	21	92	37	0	1	61	1.04
30623263--30623366	51	2.0	51	83	7	131	40	1	16	41	1.59
30644285--30644327	17	2.4	18	88	7	70	62	0	0	37	0.95
30644295--30644353	7	8.1	7	79	7	64	71	0	0	28	0.87
30644313--30644354	13	3.2	13	86	6	57	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30646042--30646090	24	2.0	24	96	0	89	24	12	10	53	1.69
30646046--30646098	24	2.2	24	89	0	79	28	15	7	49	1.71
30652668--30652695	11	2.5	11	100	0	56	50	25	7	17	1.72
30655246--30655274	15	1.9	15	100	0	58	31	13	27	27	1.94
30656192--30656305	49	2.3	49	80	5	140	32	33	17	16	1.93
30658400--30658444	22	2.0	22	91	8	74	42	0	0	57	0.98
30663483--30663649	31	5.4	30	79	5	127	23	21	10	44	1.83
30663483--30663618	62	2.2	62	79	0	146	25	20	8	45	1.80
30667194--30667246	2	26.5	2	100	0	106	50	0	49	0	1.00
30671257--30671513	129	2.0	129	86	3	356	27	29	14	28	1.95
30678683--30679177	263	1.9	262	81	5	613	39	10	11	38	1.76
30685179--30685331	37	4.1	37	94	0	261	26	32	18	22	1.97
30685450--30685674	47	4.7	47	89	3	317	27	30	9	32	1.88
30685450--30685674	96	2.4	94	88	3	326	27	30	9	32	1.88
30688848--30688947	3	33.7	3	88	7	127	64	1	4	31	1.19
30690158--30690215	23	2.6	21	86	8	71	15	6	39	37	1.74
30690756--30691585	72	11.6	71	90	5	1221	33	18	16	31	1.93
30692436--30692464	1	29.0	1	100	0	58	0	0	0	100	0.00
30718667--30718844	27	6.6	27	83	3	205	26	15	28	29	1.96
30718668--30718823	82	1.9	81	88	3	233	26	15	28	29	1.96
30718664--30718844	82	2.2	81	83	2	229	27	15	27	29	1.96
30722182--30722248	3	22.7	3	82	11	61	62	1	5	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30723039--30723086	15	3.2	15	77	11	53	81	2	8	8	0.96
30723465--30723522	23	2.6	21	86	8	71	15	6	39	37	1.74
30725014--30725236	40	5.6	40	88	4	272	25	27	22	24	2.00
30725548--30725626	29	2.7	29	86	5	106	27	32	15	24	1.95
30726929--30727081	37	4.1	37	94	0	261	26	32	18	22	1.97
30727200--30727424	47	4.7	47	89	4	319	27	30	9	32	1.88
30727200--30727424	96	2.4	94	88	4	319	27	30	9	32	1.88
30731257--30731374	57	2.1	58	85	1	157	27	17	6	47	1.73
30733480--30733510	9	3.4	9	90	0	53	25	12	22	38	1.90
30733562--30733598	9	4.1	9	92	0	65	45	13	10	29	1.77
30733647--30733707	30	2.0	31	90	9	99	19	42	0	37	1.52
30735912--30736022	42	2.6	42	84	0	123	24	19	17	38	1.92
30735931--30736040	42	2.6	42	82	2	123	22	19	20	37	1.94
30745146--30745183	19	2.0	19	94	0	67	39	10	13	36	1.79
30752135--30752329	106	1.8	105	84	1	264	19	25	22	32	1.97
30752317--30752502	25	7.6	25	73	13	111	19	22	20	38	1.94
30752394--30752558	24	6.7	24	73	8	91	18	25	21	34	1.96
30752486--30752554	25	2.8	24	80	2	75	18	24	23	33	1.97
30752394--30752558	73	2.2	73	79	4	161	18	25	21	34	1.96
30752512--30752579	25	2.7	25	81	6	75	22	20	20	36	1.95
30755405--30755628	40	5.7	40	85	7	264	25	21	27	25	2.00
30755405--30755628	79	2.8	81	84	8	273	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30755405--30755661	79	3.3	79	81	9	215	26	21	27	24	1.99
30767002--30767140	70	2.0	70	94	0	242	30	13	12	42	1.82
30771620--30771666	3	15.7	3	100	0	94	68	0	31	0	0.90
30774256--30774284	2	14.5	2	100	0	58	51	48	0	0	1.00
30780760--30780872	25	4.6	25	84	2	111	33	19	23	23	1.97
30780999--30781049	20	2.4	22	81	15	63	50	13	1	33	1.53
30781008--30781049	22	2.0	20	86	13	59	52	9	2	35	1.47
30783276--30783703	27	15.9	27	83	6	446	41	21	15	20	1.89
30783276--30783703	54	8.0	54	83	6	494	41	21	15	20	1.89
30783276--30783703	188	2.3	186	87	4	626	41	21	15	20	1.89
30784068--30784156	28	3.2	28	95	1	153	21	21	24	32	1.98
30784093--30784184	28	2.9	33	82	7	86	21	21	26	30	1.99
30786465--30786500	18	1.9	19	88	5	56	33	0	11	55	1.35
30788886--30788935	24	2.1	24	100	0	100	38	24	0	38	1.56
30799278--30799393	45	2.6	45	80	5	128	21	13	27	37	1.91
30801746--30801787	21	2.0	21	86	9	59	50	7	0	42	1.30
30802833--30803019	50	3.9	47	83	4	239	25	20	33	20	1.97
30802837--30803019	97	1.9	99	88	3	280	26	20	32	20	1.97
30808548--30808586	19	2.1	19	100	0	78	51	17	5	25	1.66
30814519--30814599	37	2.2	37	90	0	126	24	35	16	23	1.94
30814781--30814833	26	2.0	27	92	3	90	30	24	20	24	1.99
30816854--30816902	24	2.1	23	84	3	62	53	10	2	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30821128--30821176	24	2.1	24	84	3	64	46	8	4	40	1.52
30821488--30821536	22	2.2	22	100	0	98	30	8	16	44	1.76
30833117--30833149	17	1.9	17	93	0	57	21	12	9	57	1.62
30844307--30844385	9	8.7	9	73	15	56	25	3	2	68	1.19
30844596--30844666	3	23.7	3	75	5	63	23	7	2	66	1.30
30844597--30844668	25	3.0	25	83	4	94	23	6	2	66	1.29
30844588--30844683	48	2.0	46	82	7	113	20	7	4	67	1.32
30846070--30846126	27	2.3	25	82	14	73	12	7	5	75	1.17
30850294--30850332	15	2.4	17	83	8	55	71	0	15	12	1.14
30854363--30854405	7	6.0	7	81	5	50	48	39	0	11	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213