genome.fa.s14.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  109  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30864980--30865019	20	2.0	21	85	5	55	67	2	2	27	1.16
30871149--30871341	50	3.8	50	83	0	224	22	28	22	26	1.99
30875541--30875582	21	2.0	21	86	9	59	28	21	11	38	1.89
30878611--30878803	50	3.8	50	80	0	233	23	30	20	24	1.99
30879141--30879209	30	2.4	28	78	7	84	34	17	10	37	1.83
30880417--30880466	26	1.9	26	91	0	82	34	22	22	22	1.97
30880668--30880820	26	5.9	26	83	0	171	25	17	20	36	1.94
30886089--30886128	20	2.0	21	85	5	55	30	12	25	32	1.92
30890602--30890651	26	1.9	26	88	8	75	34	20	0	46	1.51
30894486--30894678	27	7.2	27	84	4	241	18	17	21	43	1.89
30894488--30894678	80	2.4	81	90	1	305	18	17	20	43	1.88
30894490--30894678	53	3.5	54	84	5	258	18	16	21	43	1.88
30900956--30900990	15	2.4	15	90	4	54	48	0	8	42	1.33
30903866--30903900	17	2.1	16	94	5	61	80	5	2	11	1.00
30905016--30905069	28	2.0	28	89	7	85	64	0	25	9	1.23
30911039--30911104	5	12.4	5	83	13	71	19	1	0	78	0.82
30911039--30911108	18	4.2	17	82	14	92	20	1	0	78	0.83
30911044--30911118	31	2.4	32	90	2	116	21	2	0	76	0.92
30911175--30911213	17	2.3	17	100	0	78	56	10	28	5	1.54
30912515--30912758	50	4.9	50	82	5	244	28	20	28	22	1.99
30912470--30912709	100	2.3	103	82	5	272	28	20	28	23	1.99
30916893--30917041	56	2.7	55	90	6	228	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30916893--30917126	56	4.4	49	83	6	189	26	21	27	24	1.99
30917298--30917596	56	5.7	53	80	8	262	26	20	27	25	1.99
30916725--30917531	405	2.0	405	97	0	1533	30	16	23	29	1.96
30920666--30920700	15	2.4	15	90	4	54	48	0	8	42	1.33
30930149--30930174	11	2.4	11	100	0	52	61	0	0	38	0.96
30943536--30943602	22	3.0	22	76	8	73	40	17	25	16	1.90
30950823--30951021	27	7.4	27	79	0	191	42	20	20	16	1.89
30952224--30952302	27	2.9	27	90	3	115	40	22	16	20	1.91
30955962--30956003	3	14.0	3	100	0	84	66	0	0	33	0.92
30960221--30960418	27	7.4	27	75	7	154	38	19	18	22	1.93
30960243--30960413	81	2.1	82	85	4	231	38	19	20	22	1.94
30960221--30960418	54	3.7	54	77	3	186	38	19	18	22	1.93
30961817--30962128	27	11.6	27	81	0	345	43	22	16	17	1.87
30966329--30966640	149	2.1	148	86	5	441	42	4	10	42	1.58
30967520--30967608	27	3.3	27	96	0	160	35	11	10	42	1.74
30969447--30969484	17	2.2	17	90	0	58	31	7	15	44	1.75
30969447--30969497	17	3.0	18	81	16	56	29	9	17	43	1.81
30985615--30985911	50	5.8	50	80	4	222	28	20	26	24	1.99
30993718--30993762	22	2.0	22	100	0	90	35	26	22	15	1.94
31001443--31001548	50	2.1	50	82	3	124	27	22	32	17	1.97
31009267--31009317	21	2.4	21	83	9	59	62	9	3	23	1.42
31009606--31009635	12	2.5	12	94	0	51	40	0	43	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31020187--31020307	61	2.0	61	98	0	233	31	13	20	34	1.91
31020187--31020276	30	3.0	29	63	15	74	28	15	22	33	1.95
31022569--31022616	24	2.0	24	83	0	60	47	10	6	35	1.63
31040625--31040703	37	2.1	37	88	4	115	25	30	18	25	1.98
31040822--31041083	47	5.6	47	93	0	425	28	30	9	32	1.88
31041301--31041489	40	4.8	40	79	10	172	25	26	21	26	1.99
31041336--31041489	79	1.9	80	83	6	197	25	27	20	25	1.99
31041336--31041439	39	2.6	40	90	1	156	26	26	20	25	1.99
31052024--31052062	20	1.9	21	94	5	71	33	2	0	64	1.08
31052024--31052068	20	2.1	21	88	8	65	35	2	0	62	1.08
31052272--31052314	22	2.0	22	86	4	61	51	0	13	34	1.42
31059093--31059637	27	20.2	27	80	5	449	43	18	18	19	1.88
31060065--31060151	28	3.1	28	83	1	104	25	21	22	29	1.99
31067110--31067600	27	18.3	26	83	4	426	43	18	17	20	1.89
31067110--31067584	81	5.9	80	82	4	553	43	18	17	20	1.88
31071274--31071312	21	1.9	21	89	5	62	35	7	17	38	1.79
31071458--31071545	20	4.4	21	73	21	80	31	10	13	44	1.77
31073303--31073396	40	2.3	40	81	5	109	26	17	26	29	1.97
31073306--31073661	84	4.3	84	89	2	506	22	17	25	35	1.95
31073360--31073661	167	1.8	167	92	1	516	21	16	25	36	1.94
31073374--31073705	41	7.8	44	76	15	247	21	16	26	35	1.94
31079244--31079281	19	2.0	20	94	5	69	36	5	0	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31079244--31079282	20	2.0	20	94	0	69	38	5	0	56	1.22
31098318--31098383	34	2.0	31	88	8	96	30	21	24	24	1.99
31101492--31101931	50	8.6	50	75	5	326	23	27	20	28	1.99
31101534--31101884	100	3.5	100	74	9	368	23	27	20	28	1.99
31101492--31101932	205	2.2	205	94	0	765	23	26	20	28	1.99
31108337--31108386	18	2.7	18	87	3	55	24	24	36	16	1.94
31108352--31108394	18	2.4	18	96	3	79	16	25	37	20	1.93
31108352--31108400	18	2.7	18	90	6	64	18	30	32	18	1.95
31114033--31114390	44	8.0	44	75	9	278	30	22	17	29	1.97
31114471--31114768	44	6.9	44	68	13	172	26	21	21	30	1.98
31114427--31114768	129	2.7	129	86	2	454	27	21	21	30	1.98
31114778--31115030	45	5.7	45	85	5	334	22	22	27	28	1.99
31114776--31115040	89	3.0	89	90	1	424	21	22	27	28	1.99
31115876--31115921	19	2.4	20	82	10	60	23	0	2	73	0.94
31118731--31118767	18	2.1	18	94	0	65	16	0	8	75	1.02
31119953--31120044	27	3.4	27	80	0	112	23	17	26	32	1.97
31123906--31123950	22	2.1	22	88	12	67	57	2	6	33	1.37
31123985--31124024	18	2.3	18	86	4	55	65	0	2	32	1.06
31123986--31124040	17	3.2	16	80	10	56	61	1	3	32	1.24
31126105--31126161	28	2.0	28	96	0	105	26	15	10	47	1.78
31128439--31128485	24	2.0	24	83	8	60	53	6	6	34	1.52
31130332--31130646	44	7.0	43	72	12	231	28	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31130774--31130932	41	3.8	41	69	8	140	28	20	20	30	1.98
31130784--31130979	85	2.3	85	91	2	322	27	19	22	30	1.98
31130695--31130972	129	2.2	127	79	5	290	28	20	20	31	1.97
31130695--31130972	44	6.5	43	70	9	176	28	20	20	31	1.97
31130982--31131387	45	9.1	45	80	7	479	22	23	25	28	1.99
31130982--31131388	89	4.6	89	93	0	670	22	23	25	28	1.99
31131665--31131718	24	2.2	24	93	0	90	29	22	12	35	1.91
31132619--31132653	10	3.4	10	88	4	52	0	11	2	85	0.69
31132616--31132655	16	2.5	17	84	12	57	0	15	2	82	0.77
31134835--31135059	40	5.7	40	83	4	222	24	20	28	27	1.99
31134910--31135092	79	2.3	80	82	1	226	25	19	27	26	1.99
31140883--31141551	174	3.9	174	83	5	738	27	21	20	30	1.98
31140958--31141551	174	3.5	174	85	4	780	27	21	19	30	1.98
31140736--31141291	218	2.6	214	84	4	553	26	21	20	31	1.98
31140740--31141993	388	3.2	385	81	6	1457	27	22	20	30	1.98
31140791--31141946	87	13.4	87	70	10	377	27	21	20	30	1.98
31141311--31141948	218	2.9	218	92	2	1047	27	22	19	29	1.98
31141515--31141993	174	2.7	174	79	6	445	27	23	19	29	1.98
31143189--31143236	7	7.0	7	77	13	55	14	16	0	68	1.21
31143189--31143236	21	2.3	21	89	3	80	14	16	0	68	1.21
31144126--31144178	18	2.8	18	78	16	63	5	11	7	75	1.18
31144102--31144204	54	1.9	53	86	7	147	6	11	5	75	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31144083--31144204	47	2.6	45	73	15	104	6	12	4	76	1.14
31144120--31144201	17	4.6	17	67	15	51	3	13	6	76	1.10
31148314--31148616	114	2.8	109	87	4	405	33	20	16	29	1.94
31149859--31149898	17	2.4	17	91	0	62	17	22	50	10	1.76
31152515--31152712	48	4.1	48	82	0	216	27	21	28	22	1.99
31152537--31152710	96	1.8	96	86	2	251	27	21	29	21	1.98
31153561--31153585	2	12.5	2	100	0	50	52	0	0	48	1.00
31154889--31154959	21	3.4	21	76	7	63	56	21	1	21	1.50
31158164--31158235	21	3.4	21	83	7	74	31	20	6	40	1.79
31160389--31160569	40	4.5	39	82	6	188	25	23	27	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213