genome.fa.s14.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  193  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57903472--57903502	14	2.2	14	94	0	53	77	9	0	12	0.99
57903613--57903668	19	2.9	19	94	0	85	37	10	17	33	1.85
57905437--57905474	20	1.9	20	94	0	67	39	13	10	36	1.79
57906500--57906543	23	1.9	23	90	0	70	50	6	22	20	1.72
57907474--57907676	101	2.0	101	100	0	406	32	14	18	33	1.92
57921727--57921757	15	2.1	15	93	0	53	45	0	9	45	1.36
57928808--57928850	18	2.4	18	84	0	59	39	0	44	16	1.48
57928808--57928850	12	3.6	12	83	0	50	39	0	44	16	1.48
57928905--57928992	27	3.2	27	81	1	104	23	18	38	19	1.93
57932639--57932690	19	2.7	19	78	3	59	30	11	9	48	1.72
57932730--57932780	21	2.5	21	87	6	70	31	17	17	33	1.94
57934658--57935000	50	6.8	51	81	6	367	28	14	26	30	1.95
57934658--57935000	102	3.4	101	88	2	485	28	14	26	30	1.95
57937663--57938005	50	6.8	51	81	6	367	28	14	26	30	1.95
57937663--57938005	102	3.4	101	88	2	485	28	14	26	30	1.95
57961316--57961402	41	2.1	41	97	0	165	45	8	3	42	1.50
57961903--57961955	19	2.7	18	78	21	54	35	7	13	43	1.72
57965409--57965467	25	2.4	25	88	0	82	32	23	20	23	1.98
57967769--57967813	21	2.1	22	91	4	74	40	2	0	57	1.11
57968862--57968937	38	2.1	36	90	5	116	31	30	7	30	1.86
57970184--57970225	10	4.2	10	87	6	59	78	0	21	0	0.75
57970192--57970233	7	6.1	7	80	5	50	76	0	23	0	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57978887--57978981	46	2.1	46	95	0	172	40	22	2	35	1.66
57983453--57983529	22	3.4	22	67	19	68	36	25	2	35	1.70
57983440--57983534	46	2.1	46	100	0	190	41	23	2	33	1.66
57990551--57990791	33	6.7	33	75	16	212	31	26	20	20	1.98
57990550--57990824	108	2.6	108	89	4	418	31	26	20	21	1.98
57990770--57990823	27	2.0	28	96	3	101	29	29	22	18	1.97
57997712--57997763	26	2.0	26	96	0	95	28	34	21	15	1.94
57997637--57997839	101	2.0	101	94	1	354	31	28	19	20	1.97
57997742--57997878	42	3.5	41	71	17	137	34	27	16	21	1.95
57997738--57997915	75	2.4	75	91	0	293	33	26	17	21	1.96
57997607--57997940	176	1.9	177	92	0	562	32	27	19	20	1.97
57998726--57998887	79	2.1	79	90	0	252	30	12	24	32	1.92
58004913--58004949	18	2.1	18	100	0	74	43	18	0	37	1.51
58005108--58005162	14	4.0	14	72	13	60	27	23	18	30	1.97
58015321--58015384	20	3.2	20	93	2	101	50	6	1	42	1.37
58015571--58015636	6	10.8	6	73	15	55	51	4	9	34	1.54
58015568--58015636	17	3.8	18	79	12	70	52	4	8	34	1.52
58015715--58015757	20	2.2	20	87	8	61	69	4	4	20	1.25
58023188--58023214	8	3.4	8	100	0	54	77	0	11	11	0.99
58023321--58023380	14	4.2	14	79	10	52	68	0	8	23	1.16
58023391--58023425	18	1.9	18	100	0	70	62	0	2	34	1.10
58024736--58024890	44	3.6	43	80	7	163	30	19	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58024736--58024987	137	1.9	136	82	8	322	30	19	18	31	1.96
58036510--58036536	8	3.4	8	100	0	54	77	0	11	11	0.99
58036705--58036739	18	1.9	18	94	0	61	60	0	0	40	0.97
58038993--58039272	41	6.8	39	72	17	192	30	23	17	28	1.97
58039069--58039365	44	6.8	44	72	15	208	27	22	18	31	1.97
58038994--58039365	46	8.7	45	73	13	206	28	22	18	29	1.98
58038995--58039407	170	2.4	170	96	0	754	29	23	18	29	1.97
58039293--58039453	87	1.9	87	86	5	236	30	21	18	29	1.97
58062188--58062363	60	2.8	62	81	8	198	42	18	5	34	1.72
58070256--58070413	59	2.6	60	77	12	187	43	15	6	35	1.72
58072272--58072331	28	2.1	29	87	3	86	31	26	5	36	1.78
58072377--58072438	32	1.9	33	83	6	83	56	19	0	24	1.42
58075705--58075747	16	2.4	18	85	14	63	74	0	0	25	0.82
58078003--58078032	16	1.9	15	93	6	51	50	13	0	36	1.42
58081326--58081358	18	1.9	17	88	11	50	63	18	12	6	1.48
58081613--58081782	59	2.9	59	95	0	304	43	8	6	41	1.60
58081662--58081753	29	3.1	29	64	14	71	42	6	7	43	1.59
58081793--58081834	16	2.6	16	92	0	66	42	7	2	47	1.43
58081808--58081869	23	2.7	23	82	2	72	48	1	1	48	1.21
58084334--58084424	9	9.6	10	75	13	61	31	3	0	64	1.09
58084351--58084421	27	2.6	28	82	10	85	36	1	0	61	1.05
58084373--58084448	26	2.7	27	79	15	75	32	1	1	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58089848--58089921	31	2.4	31	90	0	121	10	36	36	16	1.83
58090166--58090215	10	5.4	9	84	11	66	84	0	2	14	0.72
58090161--58090215	19	2.9	19	79	15	60	81	0	3	14	0.82
58090167--58090212	14	3.3	14	84	6	58	82	0	2	15	0.76
58090691--58090784	45	2.1	45	100	0	188	34	24	9	31	1.88
58090881--58090944	32	2.0	32	100	0	128	31	18	3	46	1.65
58098886--58098928	14	3.1	14	86	6	52	13	11	0	74	1.07
58100339--58101467	563	2.0	563	99	0	2240	29	16	17	35	1.93
58107127--58107204	39	2.0	39	94	0	138	48	11	6	33	1.65
58109338--58109371	16	2.1	16	88	0	50	55	2	0	41	1.15
58109607--58109640	13	2.6	13	85	0	50	50	14	2	32	1.58
58111276--58111314	20	2.0	19	85	5	51	53	2	2	41	1.28
58111980--58112040	16	3.9	16	70	8	54	37	1	3	57	1.25
58112010--58112040	15	2.1	15	93	0	53	32	0	3	64	1.09
58113888--58114006	27	4.3	26	73	19	98	57	0	6	35	1.31
58113887--58114108	87	2.5	91	79	13	214	54	0	8	35	1.37
58114433--58114465	3	11.0	3	100	0	66	66	0	0	33	0.92
58118850--58118915	29	2.2	30	84	7	82	48	33	0	18	1.48
58119939--58119984	2	23.0	2	95	0	83	2	50	0	47	1.13
58120202--58120240	2	19.5	2	100	0	78	0	48	0	51	1.00
58126250--58126345	44	2.1	46	88	3	142	42	18	0	38	1.51
58126431--58126483	16	3.3	16	94	0	88	41	3	32	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58126679--58126712	17	2.0	17	100	0	68	58	0	0	41	0.98
58126745--58126784	20	2.0	21	85	5	55	60	5	0	35	1.19
58126752--58126831	28	2.8	28	81	11	92	56	1	0	42	1.07
58126763--58126864	44	2.3	41	75	16	98	50	4	0	44	1.30
58126659--58126918	117	2.3	113	87	10	358	50	3	1	43	1.31
58126874--58126938	32	2.0	32	81	0	76	47	3	0	49	1.17
58128420--58128454	15	2.3	15	100	0	70	42	11	5	40	1.65
58132560--58132620	26	2.2	28	82	8	81	65	0	0	34	0.93
58133013--58133059	21	2.2	22	88	3	69	63	4	0	31	1.13
58136661--58136964	91	3.1	99	80	13	305	46	2	2	47	1.32
58136626--58136884	91	2.8	91	98	0	491	47	3	2	47	1.32
58137033--58137074	15	2.7	16	82	14	52	45	0	2	52	1.13
58137024--58137065	15	2.9	15	82	10	52	47	0	0	52	1.00
58137290--58137357	16	4.2	16	96	0	127	38	35	0	26	1.57
58147881--58148162	76	3.8	76	81	3	311	24	18	22	34	1.96
58159901--58160012	33	3.4	32	75	6	91	23	26	18	31	1.98
58162787--58162811	4	6.2	4	100	0	50	48	0	0	52	1.00
58163278--58163303	8	3.2	8	100	0	52	38	23	0	38	1.55
58163309--58163367	13	4.1	14	69	18	50	25	23	1	49	1.60
58163309--58163394	42	2.0	42	86	4	120	24	22	2	51	1.60
58164592--58164648	9	6.7	9	75	16	50	24	7	1	66	1.26
58166710--58166758	25	1.9	26	87	4	73	30	8	2	59	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58166808--58166840	12	2.8	12	95	0	57	39	0	0	60	0.97
58168286--58168321	13	2.8	13	91	4	56	75	0	0	25	0.81
58168286--58168320	6	5.7	6	90	6	52	77	0	0	22	0.78
58168523--58168567	23	2.0	23	81	0	54	62	15	0	22	1.33
58168773--58168826	19	2.8	19	94	0	99	37	16	9	37	1.81
58168750--58168826	38	1.9	40	87	10	113	38	16	7	36	1.78
58169486--58170153	88	7.6	88	81	3	718	23	23	25	27	2.00
58169486--58170153	176	3.8	176	87	1	885	23	23	25	27	2.00
58176618--58176655	3	12.7	3	100	0	76	65	0	0	34	0.93
58176860--58176904	23	2.0	23	81	0	54	62	15	0	22	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213