genome.fa.s14.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  162  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48490914--48490953	17	2.4	17	91	0	62	45	2	15	37	1.59
48492396--48492509	56	2.0	56	96	0	210	40	17	10	31	1.84
48495025--48495113	41	2.2	41	95	0	160	41	11	8	38	1.72
48502116--48502636	47	11.1	47	93	0	862	32	9	29	28	1.88
48502755--48502833	37	2.1	37	88	4	115	25	18	30	25	1.98
48504356--48504385	7	4.4	7	95	4	53	73	0	0	26	0.84
48513074--48513518	223	2.0	223	94	0	773	33	24	12	29	1.92
48515731--48515778	16	2.8	18	75	12	55	54	0	0	45	0.99
48515908--48515974	27	2.5	27	92	4	109	23	1	11	62	1.37
48516347--48516444	47	2.1	47	100	0	196	46	20	6	26	1.73
48518021--48518200	41	4.4	40	85	2	209	48	8	24	18	1.76
48518021--48518200	81	2.2	81	86	2	245	48	8	24	18	1.76
48534141--48535883	596	2.8	597	88	5	2318	32	11	20	35	1.89
48541297--48541454	78	2.0	78	97	0	298	41	18	3	36	1.69
48545542--48545584	23	2.0	23	86	9	63	39	0	16	44	1.48
48548059--48548098	20	2.0	20	90	0	62	47	7	5	40	1.54
48548673--48548878	107	1.9	108	85	3	281	35	14	13	36	1.85
48550737--48550769	17	1.9	17	100	0	66	48	0	9	42	1.35
48550733--48550775	17	2.5	17	82	17	61	51	0	6	41	1.29
48550732--48550791	19	3.0	21	67	16	56	51	0	5	43	1.23
48558108--48558283	37	4.8	37	96	0	298	39	13	21	26	1.90
48558246--48558369	46	2.8	46	91	3	200	33	16	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48574831--48574864	17	2.0	17	88	0	50	50	5	14	29	1.67
48595684--48595733	18	2.5	20	87	9	68	74	2	20	4	1.08
48597839--48598022	40	4.6	40	83	6	205	23	21	27	27	1.99
48597839--48598019	80	2.3	81	84	9	230	23	21	27	27	1.99
48602694--48602719	13	2.0	13	100	0	52	38	0	23	38	1.55
48607068--48607108	21	2.0	21	90	0	64	29	4	4	60	1.38
48608105--48608180	38	2.0	38	97	0	143	53	25	5	15	1.62
48609220--48609247	10	2.8	10	100	0	56	28	0	0	71	0.86
48609259--48610123	158	5.4	159	89	3	1305	27	8	8	55	1.59
48609436--48609497	16	3.8	16	75	10	54	29	4	4	61	1.37
48609259--48610123	319	2.7	316	91	2	1378	27	8	8	55	1.59
48609592--48609653	16	3.8	16	73	12	54	27	6	3	62	1.35
48610109--48610141	17	1.9	17	93	0	57	9	9	6	75	1.18
48611176--48611243	29	2.4	28	82	7	82	44	13	16	26	1.84
48611270--48611333	27	2.4	27	86	0	83	9	34	31	25	1.87
48611468--48611502	17	2.1	17	88	0	52	51	5	0	42	1.25
48615709--48615738	15	1.9	16	93	6	53	43	0	6	50	1.28
48615730--48615790	15	4.2	16	69	30	57	40	0	0	59	0.98
48615731--48615891	41	3.9	42	72	20	117	42	0	2	54	1.18
48616011--48616116	44	2.5	41	76	18	126	34	30	3	31	1.75
48616028--48616116	44	2.0	46	91	4	146	37	29	4	29	1.77
48616098--48616150	16	3.3	16	91	0	88	24	33	3	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48617634--48617669	18	1.9	18	88	5	54	58	2	0	38	1.13
48618144--48618210	31	2.3	27	78	14	71	40	10	8	40	1.71
48622841--48622899	21	2.9	21	87	5	77	16	28	15	38	1.89
48629074--48629131	29	2.0	29	96	0	107	32	13	25	27	1.94
48632603--48632883	51	5.6	49	77	11	221	24	16	27	32	1.96
48632602--48632883	101	2.8	101	93	1	467	24	15	27	32	1.96
48632805--48632885	26	3.2	26	64	22	62	23	13	27	35	1.92
48632889--48633019	43	3.1	42	79	7	140	22	16	23	36	1.94
48638031--48638059	6	4.8	6	100	0	58	31	17	17	34	1.93
48640415--48640439	13	1.9	13	100	0	50	68	0	0	32	0.90
48642022--48642313	133	2.2	132	91	0	458	28	23	18	29	1.98
48642118--48642618	217	2.3	215	87	3	691	28	23	19	28	1.98
48642021--48642528	44	11.6	43	70	15	283	27	23	19	28	1.98
48657247--48657271	11	2.3	11	100	0	50	0	64	0	36	0.94
48657441--48657467	3	9.0	3	100	0	54	33	0	0	66	0.92
48659145--48659194	25	2.0	25	92	0	82	26	12	6	56	1.58
48668837--48668869	10	3.3	10	95	0	57	36	0	0	63	0.95
48668872--48668935	18	3.4	18	80	18	76	35	0	7	56	1.28
48668836--48668933	20	4.8	20	73	19	85	36	0	6	57	1.24
48669004--48669032	9	3.2	9	100	0	58	31	10	10	48	1.71
48670131--48670195	34	1.9	34	87	0	94	38	16	13	30	1.88
48686419--48686457	19	2.0	21	90	10	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48695997--48696025	9	3.0	10	90	10	51	58	0	0	41	0.98
48696047--48696100	20	2.8	20	82	17	71	42	1	0	55	1.10
48696044--48696095	25	2.1	25	85	7	70	42	1	0	55	1.10
48696076--48696191	61	1.9	58	86	8	162	41	3	5	50	1.42
48696081--48696210	58	2.2	60	77	14	135	43	3	5	46	1.44
48698719--48698959	50	4.7	51	77	6	179	26	21	28	23	1.99
48698766--48698959	50	3.9	50	80	2	185	26	22	28	21	1.99
48699161--48699209	20	2.5	20	78	15	57	55	6	26	12	1.60
48700636--48700661	12	2.2	12	100	0	52	15	26	7	50	1.71
48700628--48700682	28	2.0	28	92	0	92	14	25	5	54	1.61
48700962--48701086	50	2.5	50	79	7	137	20	30	23	25	1.99
48711683--48711721	10	4.1	9	86	6	51	61	2	0	35	1.10
48711665--48711714	24	2.1	24	85	14	68	60	6	0	34	1.21
48715464--48715512	22	2.1	22	81	7	53	69	2	8	20	1.24
48718149--48718178	15	1.9	16	93	6	53	46	0	10	43	1.37
48720303--48720576	41	6.6	40	76	7	251	23	14	24	37	1.92
48720302--48720578	84	3.3	84	87	1	389	23	14	24	37	1.92
48722456--48722480	12	2.1	12	100	0	50	40	0	8	52	1.31
48727837--48727924	38	2.3	38	80	7	106	34	12	13	39	1.83
48737687--48737761	37	2.0	37	94	0	132	22	22	25	29	1.99
48738672--48738723	25	2.1	25	100	0	104	19	26	3	50	1.65
48742965--48742994	15	2.0	15	100	0	60	26	40	0	33	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48761283--48761326	24	1.9	22	95	4	70	18	20	13	47	1.82
48761290--48761344	24	2.3	24	84	6	67	21	20	14	43	1.87
48762096--48762150	27	2.0	27	96	0	101	16	30	7	45	1.74
48762596--48762674	25	3.2	23	65	16	59	24	11	20	44	1.84
48762694--48762755	23	2.7	23	80	5	81	17	6	22	53	1.67
48762776--48762862	23	3.9	22	75	14	81	18	5	22	52	1.66
48762694--48762890	107	1.8	107	96	2	369	24	5	24	44	1.75
48773673--48773845	47	3.8	46	71	15	146	44	2	3	49	1.34
48773658--48773951	91	3.4	90	85	9	396	46	3	3	46	1.36
48773781--48773938	78	2.0	78	95	0	280	46	2	2	48	1.29
48774318--48774352	18	2.0	17	88	5	52	45	0	0	54	0.99
48773958--48774366	120	3.4	120	96	1	741	43	3	4	48	1.40
48775883--48775922	2	20.0	2	100	0	80	50	0	50	0	1.00
48779906--48779930	13	1.9	13	100	0	50	40	0	12	48	1.40
48787963--48788011	26	1.9	26	87	4	73	40	10	28	20	1.85
48799243--48799350	41	2.6	41	79	0	108	35	17	25	21	1.95
48800372--48800417	3	16.0	3	78	17	53	73	0	0	26	0.83
48800375--48800407	8	4.1	8	100	0	66	75	0	0	24	0.80
48810484--48810673	95	2.0	95	90	2	301	35	17	18	27	1.94
48811402--48811547	47	3.1	47	95	2	249	30	15	30	23	1.96
48814093--48814129	3	12.3	3	100	0	74	67	0	32	0	0.91
48818498--48818530	15	2.1	16	88	5	50	63	0	6	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48819386--48819448	19	3.1	21	88	6	71	36	17	7	38	1.79
48819395--48819448	19	2.8	19	94	0	90	35	18	9	37	1.83
48819875--48820285	131	3.1	132	88	3	605	26	27	19	27	1.99
48819968--48820274	44	7.0	44	65	14	141	26	26	19	27	1.99
48820253--48820485	89	2.6	89	83	0	295	29	25	20	24	1.99
48820318--48820451	45	3.0	45	68	6	119	27	25	20	26	1.99
48820345--48820483	45	3.1	45	70	6	120	27	26	20	25	1.99
48820580--48820743	44	3.7	44	81	6	145	28	21	19	30	1.97
48828132--48828188	19	2.7	22	76	15	66	40	17	7	35	1.77
48828122--48828179	22	2.6	22	81	7	64	41	17	5	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213