genome.fa.s14.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  181  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54585801--54586071	40	7.3	35	70	14	179	23	22	22	30	1.99
54586725--54586774	24	2.1	24	85	3	66	34	14	16	36	1.88
54592164--54592302	69	2.0	69	97	0	260	26	20	11	41	1.86
54596368--54596437	35	2.0	35	94	0	122	40	31	5	22	1.78
54599056--54599108	19	3.0	17	78	10	61	35	9	18	35	1.84
54599080--54599124	23	2.0	23	91	4	74	37	4	17	40	1.70
54599090--54599134	23	2.0	23	86	4	65	33	4	15	46	1.66
54599296--54599334	19	2.0	21	85	10	55	15	10	5	69	1.34
54599538--54599575	15	2.6	15	83	4	51	26	0	2	71	1.00
54599540--54599590	12	4.0	12	82	12	50	29	0	1	68	1.00
54599554--54599591	12	2.8	13	88	11	51	34	0	0	65	0.93
54606103--54606324	88	2.5	87	88	2	327	28	27	22	21	1.99
54606336--54606800	44	10.7	44	84	5	570	28	18	25	27	1.98
54606336--54606754	214	2.0	214	88	2	628	29	17	24	28	1.98
54606376--54606800	170	2.5	169	90	3	634	28	18	25	27	1.98
54607107--54607222	44	2.7	44	77	9	121	30	20	21	27	1.98
54607631--54607683	19	3.0	17	78	10	61	35	9	18	35	1.84
54607655--54607699	23	2.0	23	91	4	74	37	4	17	40	1.70
54607665--54607709	23	2.0	23	86	4	65	33	4	15	46	1.66
54613596--54613627	15	2.1	15	94	0	55	15	6	9	68	1.36
54621102--54621143	21	2.0	21	85	0	57	42	16	7	33	1.75
54625401--54625513	55	2.1	55	89	0	172	24	7	15	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54641114--54641222	26	4.0	27	66	17	91	41	0	2	55	1.21
54641174--54641208	18	2.0	17	88	5	52	40	2	2	54	1.30
54641354--54641459	44	2.5	41	77	18	126	34	29	3	32	1.75
54641367--54641459	44	2.1	46	89	4	145	36	27	4	31	1.76
54641441--54641493	16	3.3	16	83	0	70	24	30	3	41	1.72
54642598--54642644	11	4.2	11	81	13	51	23	0	6	70	1.10
54646799--54646835	3	12.0	3	94	5	65	35	0	0	64	0.94
54646975--54647012	18	2.1	19	90	5	60	39	10	0	50	1.37
54646969--54647030	26	2.5	25	84	7	74	37	11	0	51	1.38
54646989--54647038	26	1.9	26	87	0	73	34	14	0	52	1.42
54648843--54648894	15	3.6	15	85	15	65	11	17	0	71	1.15
54648845--54648894	7	7.0	7	79	20	59	12	16	0	72	1.13
54648862--54648886	13	1.9	13	100	0	50	8	12	0	80	0.92
54649382--54649447	21	3.0	23	74	14	59	3	12	6	78	1.04
54653644--54653681	18	2.1	19	90	5	60	50	0	10	39	1.37
54653618--54653667	26	1.9	26	87	0	73	52	0	14	34	1.42
54655699--54655818	48	2.5	48	83	5	145	36	12	9	41	1.75
54658085--54658148	21	3.0	22	74	4	58	53	9	6	31	1.58
54658121--54658152	17	1.9	16	93	6	55	59	6	6	28	1.46
54658353--54658863	106	4.8	113	78	12	369	58	13	0	27	1.39
54658376--54658863	111	4.6	111	80	12	553	57	13	0	27	1.40
54658629--54658863	102	2.3	102	84	4	303	55	14	0	28	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54658990--54659042	4	13.5	4	79	18	58	1	20	0	77	0.87
54658990--54659042	7	6.8	8	81	14	58	1	20	0	77	0.87
54658990--54659042	22	2.7	20	80	13	65	1	20	0	77	0.87
54658990--54659042	11	4.5	12	80	17	58	1	20	0	77	0.87
54659198--54659260	27	2.3	27	100	0	126	15	28	36	19	1.92
54665403--54665469	34	1.9	35	87	3	100	31	8	14	44	1.76
54667469--54667499	14	2.1	15	94	5	55	19	6	0	74	1.03
54668194--54668278	28	2.9	29	77	8	100	30	4	2	62	1.28
54675024--54675062	15	2.6	16	88	8	55	76	0	20	2	0.90
54675010--54675062	19	2.7	19	77	16	63	75	1	18	3	1.05
54682314--54682389	17	4.4	17	65	23	50	50	0	18	31	1.47
54682306--54682415	53	2.1	53	100	0	220	50	0	18	30	1.47
54684262--54684297	16	2.1	18	90	10	58	66	5	0	27	1.13
54684531--54684564	13	2.6	13	95	0	59	35	8	20	35	1.84
54700730--54700832	52	2.0	51	88	1	152	45	17	23	13	1.84
54702103--54702226	44	2.8	44	79	6	126	32	16	20	30	1.95
54702255--54702350	45	2.2	45	81	5	115	29	19	28	22	1.98
54702321--54702442	43	2.8	44	83	6	158	31	18	20	29	1.96
54702321--54703140	44	18.7	45	69	15	179	29	21	23	26	1.99
54702058--54702552	217	2.3	218	91	0	785	28	19	24	28	1.98
54702683--54703141	85	5.3	83	74	8	337	30	22	21	25	1.99
54702665--54703190	129	4.1	129	90	0	791	30	22	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54702680--54703141	44	10.7	44	71	12	332	30	22	21	25	1.99
54703617--54703668	18	2.8	18	79	2	59	46	36	3	13	1.62
54706271--54706348	41	1.9	40	84	10	104	52	11	12	23	1.72
54708486--54708528	10	4.1	10	82	11	50	58	4	0	37	1.19
54713803--54713924	62	2.0	62	93	0	208	34	22	12	30	1.91
54721340--54721403	4	15.8	4	75	15	51	73	4	0	21	1.01
54721798--54721836	19	2.0	21	85	10	55	69	5	10	15	1.34
54722001--54722058	22	2.6	22	84	7	73	43	17	3	36	1.66
54722014--54722111	19	4.8	19	82	9	97	38	16	7	37	1.76
54722048--54722110	21	3.1	21	86	9	103	38	14	7	39	1.75
54724188--54724262	14	5.0	15	76	11	64	65	1	1	32	1.09
54725312--54725348	19	2.0	18	89	5	56	40	0	2	56	1.13
54725285--54725349	18	3.8	17	74	15	62	41	0	1	56	1.08
54725317--54725362	19	2.3	20	81	7	58	39	2	4	54	1.32
54725900--54726012	19	5.8	19	83	8	156	39	8	15	36	1.78
54725901--54726006	40	2.7	40	92	5	173	40	8	14	36	1.76
54726529--54726572	18	2.5	17	77	3	52	9	11	4	75	1.19
54726778--54726828	25	2.0	26	88	7	77	31	7	3	56	1.46
54727504--54727698	98	2.0	98	95	0	354	27	10	25	36	1.89
54728466--54728662	98	2.0	98	92	2	324	36	22	10	30	1.88
54729333--54729381	24	2.1	23	85	14	66	61	2	8	28	1.36
54729364--54729399	15	2.4	15	90	0	54	61	2	8	27	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54729866--54729892	9	3.0	9	100	0	54	0	11	0	88	0.50
54730001--54730136	19	6.8	19	79	6	128	37	14	8	38	1.78
54730024--54730135	40	2.8	40	93	2	183	35	14	9	40	1.79
54730314--54730735	44	9.8	44	74	13	294	26	24	21	27	1.99
54730358--54730646	128	2.3	128	97	0	551	28	22	22	27	1.99
54730898--54731342	44	10.2	44	63	17	176	24	24	21	29	1.99
54730806--54731448	132	4.9	132	94	1	1123	24	24	21	29	1.99
54741982--54742126	74	1.9	75	97	2	274	31	30	15	22	1.95
54743842--54744034	97	2.0	97	96	1	323	37	24	10	27	1.88
54744680--54744726	23	2.0	23	87	0	67	57	4	8	29	1.48
54745333--54745444	19	5.8	19	85	6	163	35	14	10	39	1.81
54769877--54770030	44	3.5	44	83	13	185	26	25	20	27	1.99
54769909--54770030	45	2.7	45	87	8	187	25	27	20	26	1.99
54770193--54770641	44	10.2	44	65	16	214	24	24	20	30	1.99
54770101--54770885	132	5.9	132	94	0	1363	24	24	20	30	1.99
54770193--54770811	44	14.1	43	64	17	191	24	24	20	30	1.99
54775685--54775709	13	1.9	13	100	0	50	32	4	24	40	1.73
54777327--54777486	41	3.9	41	90	1	223	28	20	27	23	1.99
54783333--54783357	13	1.9	13	100	0	50	32	4	24	40	1.73
54784974--54785094	41	3.0	41	95	0	215	28	19	28	23	1.99
54784956--54785130	82	2.1	81	81	4	199	30	18	25	25	1.98
54786552--54786706	76	2.0	76	100	0	310	29	30	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54789300--54789348	26	1.9	25	88	12	73	59	2	8	30	1.38
54789326--54789360	16	2.2	16	89	0	52	60	2	8	28	1.41
54789984--54790096	19	5.8	19	85	4	163	35	14	10	39	1.80
54789984--54790095	40	2.8	40	93	2	183	35	13	10	40	1.79
54801756--54801804	24	1.9	27	88	12	77	53	12	0	34	1.39
54807454--54807648	98	2.0	98	93	0	336	36	24	10	28	1.88
54808317--54808365	25	2.0	25	87	0	71	55	4	8	32	1.48
54809102--54809195	19	4.8	19	89	5	152	35	14	11	38	1.83
54809102--54809195	40	2.4	38	94	3	161	35	14	11	38	1.83
54813120--54813174	14	3.9	14	80	9	67	74	0	25	0	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213