genome.fa.s14.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  17  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4590832--4590886	25	2.2	25	87	3	76	58	0	1	40	1.09
4591629--4591900	135	2.0	135	99	0	535	39	16	17	26	1.91
4595833--4595881	22	2.2	22	82	13	57	71	6	2	20	1.18
4600605--4600646	22	1.9	22	85	9	59	66	0	4	28	1.12
4601969--4602003	18	1.9	18	88	0	52	34	37	0	28	1.58
4605743--4605778	17	2.1	17	100	0	72	27	16	5	50	1.68
4606261--4606306	19	2.4	19	76	20	51	34	2	4	58	1.30
4608482--4608516	15	2.4	15	90	4	54	48	0	8	42	1.33
4618346--4618395	17	2.9	16	82	11	64	24	6	0	70	1.10
4618346--4618390	21	2.1	22	87	4	65	22	6	0	71	1.09
4618483--4618525	22	1.9	23	90	4	70	39	27	9	23	1.85
4619416--4619453	10	3.7	10	83	16	51	71	2	0	26	1.00
4620358--4620433	11	7.2	11	73	11	52	61	0	2	35	1.10
4620355--4620411	30	1.9	30	92	0	96	61	0	0	38	0.96
4620368--4620410	19	2.2	20	95	4	79	65	0	0	34	0.93
4620357--4620421	30	2.2	30	85	0	85	61	0	3	35	1.12
4620374--4620442	22	3.5	19	77	12	70	63	0	2	33	1.09
4627599--4627634	16	2.3	15	85	4	54	69	8	2	19	1.27
4639092--4639144	23	2.2	24	80	12	65	69	1	0	28	0.99
4639110--4639155	23	2.0	23	83	8	58	69	0	0	30	0.89
4643083--4643130	25	2.0	24	91	0	69	29	16	29	25	1.97
4643172--4643311	25	5.6	25	71	13	101	33	20	25	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4643134--4643273	73	1.9	73	82	2	174	34	20	25	20	1.96
4643131--4643311	25	7.4	25	70	10	88	34	20	24	19	1.96
4650713--4650751	20	2.0	20	85	10	53	20	0	7	71	1.10
4653028--4653061	12	2.8	12	90	0	50	67	0	0	32	0.91
4657752--4658042	161	1.8	160	90	2	476	34	9	10	46	1.70
4663938--4663997	31	1.9	31	86	6	86	66	3	6	23	1.30
4664240--4664307	8	8.6	8	77	9	59	22	0	2	75	0.94
4672615--4672674	31	1.9	31	90	6	95	66	1	6	25	1.25
4672671--4672714	22	2.0	23	86	4	63	61	4	6	27	1.41
4672898--4672983	24	3.6	23	80	10	68	25	1	3	69	1.11
4672907--4672966	24	2.5	24	84	10	70	25	0	5	70	1.08
4697482--4697523	23	1.9	23	85	9	61	28	2	16	52	1.56
4703913--4703966	27	2.0	27	89	7	83	61	11	7	20	1.53
4704453--4704493	22	2.0	20	85	9	55	12	34	0	53	1.38
4707362--4707675	44	7.2	44	65	9	174	27	23	19	29	1.98
4707274--4707784	263	1.9	263	94	0	907	28	22	18	29	1.98
4707274--4707784	132	3.9	132	93	1	882	28	22	18	29	1.98
4707774--4708186	44	9.3	44	81	6	476	26	24	15	33	1.95
4707754--4708227	89	5.4	88	80	5	463	28	22	16	32	1.95
4707774--4708227	133	3.4	133	84	3	540	27	23	15	33	1.95
4708614--4708806	44	4.4	43	65	13	115	27	25	17	29	1.98
4708197--4708883	132	5.2	132	94	0	1153	29	23	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4710195--4710234	7	6.0	7	91	8	66	15	12	0	72	1.12
4710194--4710234	13	3.2	13	90	10	66	17	12	0	70	1.16
4713521--4713551	16	1.9	16	100	0	62	32	25	19	22	1.97
4722769--4722814	19	2.4	18	86	10	65	56	0	0	43	0.99
4722768--4722812	20	2.3	19	88	3	63	57	0	0	42	0.98
4723329--4723359	16	1.9	16	93	0	53	51	3	0	45	1.17
4725337--4725391	17	3.2	17	73	19	51	50	0	3	45	1.19
4727042--4727119	23	3.2	25	67	14	72	46	2	6	44	1.42
4732510--4732549	20	2.1	19	95	4	71	50	0	0	50	1.00
4739909--4739969	20	2.6	25	70	26	69	47	3	8	40	1.49
4743466--4743501	10	3.5	10	88	3	54	83	0	13	2	0.76
4744671--4744712	22	1.9	22	90	0	66	42	14	4	38	1.66
4748103--4748143	21	2.0	21	90	0	64	29	21	29	19	1.98
4750049--4750082	16	2.1	16	88	0	50	50	14	17	17	1.79
4753497--4753540	20	2.2	20	100	0	88	38	20	4	36	1.73
4753903--4753945	9	4.9	9	82	2	52	55	2	0	41	1.12
4756181--4756239	25	2.4	25	76	0	64	20	25	22	32	1.98
4759641--4759746	52	2.0	52	96	0	194	33	10	12	44	1.76
4761020--4761063	22	2.0	22	90	0	70	9	13	27	50	1.72
4761151--4761315	82	2.0	84	88	4	246	33	21	18	26	1.97
4761154--4761401	125	2.0	124	81	5	295	31	20	20	26	1.98
4761135--4761403	42	6.4	42	80	6	271	30	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4761835--4761924	21	4.3	21	77	8	94	3	41	20	35	1.69
4767432--4768620	9	131.9	9	74	8	749	35	2	12	49	1.55
4767647--4768620	54	17.3	54	79	9	860	35	2	11	50	1.53
4768780--4768834	18	3.1	18	75	15	51	56	0	3	40	1.17
4771956--4771994	21	1.9	20	89	5	60	43	35	0	20	1.52
4772026--4772075	17	2.9	17	96	0	91	36	22	22	20	1.96
4772119--4772159	17	2.4	17	95	0	73	29	29	24	17	1.97
4774960--4775025	29	2.2	30	79	12	75	31	1	3	63	1.19
4787020--4787562	217	2.5	217	90	0	852	30	20	21	27	1.98
4787018--4787539	89	6.0	89	68	14	257	30	21	22	26	1.99
4787201--4787529	173	1.9	173	80	9	386	28	22	21	27	1.99
4787030--4787561	44	12.2	44	71	14	279	29	21	21	27	1.98
4787795--4787824	15	2.0	15	93	0	51	50	3	0	46	1.18
4791570--4791611	22	1.9	22	90	0	66	42	14	4	38	1.66
4793909--4793969	28	2.1	29	82	8	72	37	21	14	26	1.92
4795073--4795116	20	2.2	20	100	0	88	38	20	4	36	1.73
4796037--4796097	23	2.8	20	82	9	68	42	3	8	45	1.50
4796311--4796381	34	2.1	34	100	0	142	30	11	22	35	1.89
4796399--4796478	31	2.6	31	89	0	124	45	21	15	18	1.86
4798502--4798592	47	1.9	47	82	4	112	34	9	10	45	1.73
4798664--4798696	14	2.4	14	100	0	66	57	30	6	6	1.47
4798723--4798761	8	5.0	8	90	6	62	41	35	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4798723--4798761	15	2.5	15	91	4	60	41	35	0	23	1.55
4798726--4798806	7	11.1	7	73	13	58	44	34	0	20	1.52
4799055--4799141	39	2.2	39	95	0	156	49	22	2	25	1.62
4799164--4799198	15	2.4	14	90	9	61	42	34	0	22	1.54
4799487--4799924	113	3.8	113	87	3	565	29	19	20	31	1.97
4799854--4800082	94	2.4	96	78	6	241	29	22	17	30	1.97
4800003--4800044	21	2.0	20	86	4	57	9	16	19	54	1.69
4802027--4802083	29	2.0	29	82	0	69	45	12	3	38	1.59
4806103--4806172	30	2.3	30	80	4	79	58	1	0	40	1.07
4806895--4807035	69	2.0	69	100	0	282	34	17	30	18	1.94
4808992--4809037	21	2.4	19	85	10	58	6	2	34	56	1.37
4808992--4809051	19	3.0	20	83	11	70	8	1	33	56	1.39
4812561--4812606	19	2.4	18	85	7	56	54	4	4	36	1.40
4813340--4813381	22	1.9	22	90	0	66	23	7	19	50	1.72
4816471--4816516	22	2.1	22	91	0	74	23	8	21	45	1.80
4823285--4823335	19	2.6	20	70	14	52	54	0	1	43	1.11
4829412--4829461	23	2.2	24	100	0	86	34	0	12	54	1.38
4829421--4829463	13	3.5	13	75	18	56	34	0	13	51	1.42
4831302--4831326	13	1.9	13	100	0	50	28	8	8	56	1.57
4837930--4837969	20	2.0	20	85	9	55	25	5	0	70	1.08
4839402--4839446	23	2.0	23	95	0	81	44	0	6	48	1.29
4840858--4840915	17	3.4	17	75	17	57	50	0	5	44	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4841884--4841950	23	2.9	24	71	8	75	47	1	5	44	1.36
4848009--4848148	46	3.0	46	94	0	235	36	7	25	30	1.84
4850235--4850259	12	2.1	12	100	0	50	60	16	0	24	1.36
4855313--4855498	89	2.1	90	88	2	277	29	12	15	42	1.84
4866038--4866097	30	2.0	30	90	6	95	25	3	15	56	1.54
4866493--4866544	22	2.3	23	86	6	70	26	0	15	57	1.38
4866592--4866632	17	2.3	18	83	4	57	36	0	9	53	1.34
4870918--4870994	9	8.1	9	70	24	52	62	3	2	31	1.27
4871259--4871298	22	1.9	22	90	10	66	40	0	0	60	0.97
4871783--4871849	31	2.3	31	85	12	88	28	2	7	61	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213