genome.fa.s14.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  197  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58977104--58977205	30	3.4	29	81	5	123	46	3	20	29	1.69
58977203--58977235	15	2.1	16	88	5	50	27	0	3	69	1.03
58981527--58981600	30	2.5	30	81	0	76	41	4	4	50	1.40
58981465--58981626	82	2.0	81	80	9	186	43	4	4	48	1.42
58981767--58981801	17	2.1	17	100	0	70	40	20	17	22	1.92
58986791--58986893	47	2.2	45	79	6	109	54	4	6	33	1.48
58992203--58992241	20	2.0	20	85	10	53	0	23	5	71	1.05
58996891--58996938	24	2.0	24	84	8	62	50	8	0	41	1.33
58998452--58998500	24	2.0	25	84	8	64	18	2	8	71	1.21
59003536--59003613	29	2.6	30	82	12	88	52	1	1	44	1.17
59003592--59003632	17	2.4	17	83	0	55	63	2	0	34	1.08
59008181--59008227	17	2.8	17	80	6	51	72	8	0	19	1.10
59008490--59008540	3	17.0	3	95	0	93	31	1	0	66	1.03
59017203--59017236	17	1.9	17	88	5	50	35	5	11	47	1.65
59018124--59018175	21	2.5	21	100	0	104	51	9	13	25	1.71
59018458--59018491	12	2.9	12	86	4	52	32	0	0	67	0.91
59018614--59018676	30	2.1	30	96	0	117	55	11	4	28	1.55
59018703--59018745	22	2.0	22	85	0	59	55	9	13	20	1.66
59022561--59022711	69	2.2	69	84	2	187	20	29	18	31	1.96
59022598--59022756	69	2.3	69	84	2	203	22	25	18	33	1.96
59024094--59024145	22	2.3	23	77	12	54	48	21	1	28	1.61
59027455--59027508	24	2.2	24	90	0	90	22	7	35	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59028301--59028340	21	2.0	21	85	5	55	40	2	2	55	1.27
59031864--59031950	43	2.0	43	90	0	138	39	34	10	16	1.82
59038064--59038099	19	1.9	18	88	5	54	38	11	19	30	1.86
59043126--59043176	25	2.0	25	96	0	93	31	37	5	25	1.80
59054883--59054923	20	2.0	20	100	0	82	14	24	9	51	1.72
59058478--59058548	23	3.0	24	72	6	63	29	19	28	22	1.98
59060627--59060676	21	2.3	21	83	13	66	48	0	0	52	1.00
59060627--59060701	22	3.6	22	72	18	70	53	1	1	44	1.17
59060633--59060721	39	2.3	39	82	5	108	51	1	1	46	1.15
59063725--59063763	18	2.2	18	86	9	53	74	10	0	15	1.07
59063725--59063763	19	2.1	18	85	4	51	74	10	0	15	1.07
59074188--59074234	19	2.6	17	83	9	58	48	17	0	34	1.47
59076498--59076550	16	3.6	16	71	23	53	37	7	0	54	1.29
59080395--59080438	21	2.1	21	100	0	88	54	9	9	27	1.62
59084315--59084385	35	2.0	35	100	0	142	19	21	25	33	1.97
59086167--59086241	37	2.0	37	94	0	132	45	20	13	21	1.84
59089966--59090039	37	2.0	36	82	7	87	39	0	2	58	1.13
59089993--59090049	29	2.0	29	86	6	80	43	0	3	52	1.18
59090289--59090343	3	19.0	3	75	14	53	34	0	3	61	1.13
59090509--59090538	15	1.9	16	93	6	53	66	10	13	10	1.44
59090492--59090576	10	8.3	10	74	5	62	72	4	18	3	1.16
59090722--59090779	29	2.0	29	80	12	66	31	1	25	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59091487--59091578	38	2.5	37	85	5	114	22	21	28	27	1.99
59095433--59095479	24	1.9	25	82	4	60	40	4	0	55	1.19
59099411--59099455	23	2.0	23	86	8	65	51	0	0	48	1.00
59099820--59099889	37	1.9	36	91	2	113	55	8	4	31	1.49
59108067--59108135	34	2.0	34	100	0	138	47	8	23	20	1.77
59108591--59108650	11	5.4	11	91	2	84	21	31	1	45	1.62
59108591--59108675	33	2.5	35	83	12	108	24	31	1	42	1.62
59108590--59108677	11	7.9	11	72	18	60	25	30	1	43	1.62
59108637--59108736	51	2.0	51	84	7	132	26	27	3	44	1.69
59110532--59110571	18	2.2	18	86	0	53	17	30	7	45	1.76
59111063--59111091	8	3.8	8	90	9	51	48	0	0	51	1.00
59111143--59112160	21	48.0	21	72	10	564	46	24	1	27	1.61
59111114--59112160	22	49.0	22	73	10	669	46	25	1	27	1.61
59111256--59111501	81	3.0	80	84	2	278	47	23	0	28	1.57
59111371--59112160	43	18.6	43	75	10	547	45	24	1	27	1.62
59111306--59111588	81	3.5	81	82	6	272	48	23	1	27	1.58
59111520--59111549	15	2.0	15	93	0	51	50	30	0	20	1.49
59111455--59111617	81	2.0	80	85	5	222	46	25	1	26	1.60
59111447--59111774	64	5.2	64	80	7	355	45	23	2	28	1.64
59111744--59111803	29	2.1	29	84	6	77	51	20	1	26	1.56
59111722--59111824	51	2.0	50	92	1	170	49	22	0	27	1.56
59111658--59111888	115	2.0	114	89	0	354	45	24	2	27	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59111744--59111818	29	2.6	29	81	8	73	50	21	1	26	1.56
59111773--59112157	64	6.1	64	80	9	362	45	25	1	27	1.60
59115334--59115888	126	4.4	125	85	4	726	30	23	16	29	1.96
59116022--59116051	9	3.3	9	90	0	51	56	23	0	20	1.42
59116014--59116051	18	2.1	18	95	0	67	57	23	0	18	1.40
59122541--59122579	20	2.0	20	94	0	69	51	12	0	35	1.40
59128004--59128041	16	2.4	16	100	0	76	47	18	0	34	1.49
59139475--59139502	5	5.6	5	100	0	56	21	60	17	0	1.36
59142016--59142054	9	4.3	9	83	0	51	51	12	5	30	1.62
59143207--59143358	66	2.3	66	86	0	205	24	26	9	40	1.85
59143717--59143762	17	2.7	17	96	0	83	41	6	6	45	1.56
59144964--59144993	12	2.4	13	94	5	53	46	3	23	26	1.68
59145085--59145140	27	2.1	27	82	0	67	26	14	33	25	1.94
59157161--59157185	12	2.1	12	100	0	50	48	16	0	36	1.46
59157260--59157300	20	2.0	22	85	9	59	43	9	9	36	1.71
59173675--59173715	3	13.3	3	89	5	64	65	2	2	29	1.18
59176819--59176980	41	4.0	41	93	1	254	22	28	20	28	1.99
59182296--59182527	46	5.0	46	93	0	383	28	28	8	34	1.87
59183273--59183305	17	1.9	17	93	0	57	54	24	3	18	1.57
59183666--59183731	32	2.1	32	82	5	80	42	13	18	25	1.87
59183679--59183737	32	1.9	30	83	10	75	47	13	15	23	1.81
59188116--59188155	14	2.9	14	84	0	62	65	0	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59188451--59188538	44	2.0	44	91	4	142	35	9	19	36	1.83
59190661--59190724	17	3.6	17	78	15	76	28	12	12	46	1.78
59190652--59190724	36	2.0	36	97	0	137	28	12	13	45	1.80
59190652--59190708	19	3.1	19	76	19	75	28	12	14	45	1.80
59195771--59195831	17	3.5	17	77	16	70	27	13	11	47	1.77
59195762--59195831	36	1.9	36	97	0	131	28	12	12	45	1.79
59195762--59195818	19	3.1	19	76	19	75	28	12	14	45	1.80
59196027--59196123	49	2.0	48	89	2	149	21	14	22	41	1.89
59199961--59200056	41	2.4	41	89	1	140	26	25	9	39	1.85
59203069--59203109	20	2.1	19	86	4	55	46	0	0	53	1.00
59203151--59203266	61	1.9	58	87	5	169	40	3	4	51	1.38
59203157--59203286	58	2.2	60	83	9	160	40	3	6	50	1.45
59203334--59203363	14	2.1	14	100	0	60	46	0	26	26	1.53
59203356--59203407	25	2.0	25	82	10	61	42	3	11	42	1.59
59206871--59206917	19	2.5	20	79	10	62	72	2	6	19	1.17
59206948--59207036	4	22.8	4	70	21	64	69	4	1	24	1.14
59206983--59207035	15	3.5	15	74	23	56	71	0	0	28	0.86
59206948--59207036	20	4.4	19	77	16	81	69	4	1	24	1.14
59210086--59210284	102	2.0	102	95	0	362	32	16	18	33	1.93
59221382--59221417	13	2.8	13	91	0	54	44	5	2	47	1.41
59231592--59231715	61	2.0	61	84	3	160	29	16	16	36	1.92
59242695--59242744	24	2.2	23	89	7	75	56	6	4	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59244640--59244676	18	2.1	18	90	10	58	54	0	16	29	1.43
59246414--59246771	44	8.0	45	73	6	244	26	24	17	30	1.97
59246416--59246726	89	3.5	90	85	5	432	26	25	18	30	1.97
59246417--59246773	181	2.0	181	83	3	459	26	24	17	30	1.97
59257975--59258325	17	19.9	17	68	15	171	44	10	14	29	1.79
59258259--59258325	33	1.9	36	85	8	95	46	11	13	28	1.79
59258429--59258470	21	2.0	20	90	4	66	40	9	14	35	1.78
59258897--59258945	7	7.1	7	80	17	50	0	26	0	73	0.83
59258897--59258945	17	2.8	17	90	3	71	0	26	0	73	0.83
59258897--59258945	10	4.8	10	87	7	55	0	26	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213