genome.fa.s14.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  118  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33726982--33727162	80	2.3	81	85	11	232	24	21	27	26	1.99
33734949--33735078	40	3.3	40	86	4	192	23	20	27	27	1.99
33734903--33735115	40	5.4	39	78	10	191	25	20	26	27	1.99
33734903--33735115	79	2.7	79	80	9	245	25	20	26	27	1.99
33737594--33737774	91	2.0	91	97	0	344	40	17	8	32	1.81
33743723--33743848	42	3.0	41	80	5	146	15	20	17	46	1.85
33743811--33743850	21	1.9	21	89	0	62	12	12	22	52	1.72
33759041--33759192	27	5.6	27	91	3	223	27	12	29	30	1.93
33759041--33759192	55	2.8	55	91	0	232	27	12	29	30	1.93
33772360--33772384	12	2.1	12	100	0	50	68	0	8	24	1.16
33775319--33775349	11	2.7	12	95	5	55	58	0	0	41	0.98
33775567--33775613	21	2.1	22	81	14	53	61	6	4	27	1.39
33778869--33778994	60	2.1	58	83	4	153	34	15	9	39	1.80
33779263--33779504	126	1.9	125	84	4	326	40	7	12	40	1.71
33779588--33779651	28	2.3	28	83	2	85	40	1	0	57	1.08
33779779--33779808	16	1.9	15	93	6	51	53	0	6	40	1.27
33779856--33779900	21	2.1	21	100	0	90	37	8	13	40	1.76
33780290--33780318	14	2.0	15	93	6	51	62	0	0	37	0.96
33781067--33781091	10	2.5	10	100	0	50	24	28	16	32	1.96
33786301--33786353	23	2.4	22	76	20	56	9	18	1	69	1.25
33799244--33799322	31	2.6	32	80	6	92	48	3	7	40	1.50
33803207--33803406	107	1.9	101	83	6	256	28	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33803297--33803406	33	3.3	33	77	7	87	26	24	16	32	1.96
33817255--33817432	40	4.5	40	80	8	186	26	21	26	25	2.00
33817301--33817465	79	2.1	79	84	6	210	27	21	26	24	1.99
33825201--33825385	40	4.6	39	81	5	194	25	22	27	24	2.00
33825201--33825418	79	2.7	79	81	8	230	26	22	26	24	2.00
33829542--33829567	13	2.0	13	100	0	52	23	23	0	53	1.46
33845385--33845442	24	2.4	23	77	8	62	17	10	10	62	1.54
33846406--33846465	31	2.0	31	83	3	77	36	6	8	48	1.60
33851297--33851322	5	5.2	5	100	0	52	57	0	42	0	0.98
33851498--33851546	26	1.9	25	83	4	62	22	4	8	65	1.37
33861372--33861433	31	2.0	31	100	0	124	32	29	6	32	1.83
33862045--33862077	16	1.9	18	88	11	52	45	6	15	33	1.70
33864461--33864514	21	2.6	21	88	8	76	37	9	14	38	1.79
33864464--33864514	20	2.5	21	87	9	70	37	9	13	39	1.78
33865040--33865066	13	2.1	13	100	0	54	37	7	7	48	1.59
33880034--33880202	78	2.2	78	90	0	257	31	20	13	34	1.90
33890877--33890947	24	2.9	24	80	2	79	67	4	23	4	1.26
33890911--33890942	16	1.9	17	93	6	57	78	0	18	3	0.89
33890928--33890980	27	1.9	28	85	11	74	66	1	26	5	1.25
33890928--33890989	33	1.9	32	87	9	90	66	3	25	4	1.27
33890914--33890995	33	2.4	33	77	18	87	67	2	25	4	1.23
33891467--33891683	52	4.2	52	85	4	276	23	7	14	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33893549--33893653	48	2.2	48	100	0	210	29	1	22	45	1.63
33898673--33898716	21	2.1	21	83	8	54	27	9	15	47	1.76
33899010--33899089	42	2.0	40	85	5	106	51	2	18	27	1.59
33902627--33902665	21	1.9	20	84	5	51	28	2	17	51	1.59
33906536--33906704	27	6.3	27	86	0	221	43	21	16	18	1.88
33906536--33906704	81	2.1	81	89	2	268	43	21	16	18	1.88
33907002--33907056	28	2.0	28	88	0	83	23	25	21	29	1.99
33909834--33910003	40	4.3	40	89	0	225	27	28	20	24	1.99
33909832--33910055	80	2.8	79	80	4	209	26	28	20	24	1.99
33915595--33915772	27	6.6	27	77	6	137	30	28	15	25	1.96
33915595--33915772	54	3.3	54	78	7	164	30	28	15	25	1.96
33931762--33931805	15	2.9	15	80	12	54	68	2	22	6	1.25
33933476--33933512	16	2.3	16	86	13	58	40	0	0	59	0.97
33933498--33933533	18	1.9	18	88	5	54	58	0	0	41	0.98
33934257--33934297	15	2.7	15	88	0	64	58	2	12	26	1.46
33934718--33934831	56	2.0	56	94	0	201	42	10	13	34	1.78
33939020--33939152	69	1.9	69	83	8	173	37	3	3	55	1.33
33951811--33951872	30	2.1	30	84	0	79	37	8	8	46	1.63
33956210--33956293	28	3.0	28	98	0	159	32	5	21	40	1.77
33957170--33957213	19	2.3	19	84	7	54	70	2	6	20	1.21
33958058--33958319	136	1.9	135	82	3	319	19	19	27	34	1.96
33966107--33966206	35	2.9	35	87	0	146	22	28	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33972097--33972225	61	2.1	61	82	4	154	26	37	18	17	1.93
33978599--33978680	27	3.1	27	81	10	89	20	23	21	34	1.97
33980351--33980379	12	2.4	12	100	0	58	31	44	0	24	1.54
33984168--33984258	44	2.0	46	93	4	159	26	4	31	37	1.76
33984168--33984271	39	2.4	44	83	12	128	28	3	31	35	1.75
33984417--33984550	18	7.9	18	68	17	81	56	2	1	39	1.21
33984451--33984632	59	3.0	60	72	12	210	52	3	2	41	1.32
33987334--33987364	15	2.1	14	94	5	53	70	0	9	19	1.14
33988785--33989085	86	3.4	85	81	11	281	39	16	8	34	1.79
33989203--33989250	19	2.5	20	86	6	71	62	6	0	31	1.20
33989189--33989318	20	6.8	19	72	17	58	66	2	0	30	1.09
33989203--33989256	19	2.8	19	78	15	67	64	5	0	29	1.16
33989244--33989317	11	7.5	10	74	15	57	67	0	1	31	0.99
33989190--33989317	9	13.4	9	72	18	73	67	2	0	29	1.09
33989564--33989657	38	2.5	38	84	5	118	38	3	0	58	1.14
33989559--33989665	19	5.6	19	75	10	94	39	2	0	57	1.13
33989565--33989677	19	6.0	19	77	10	81	37	2	0	59	1.18
33989569--33989690	9	13.3	9	66	22	58	33	2	0	63	1.14
33991413--33991443	15	2.0	16	93	6	55	51	6	16	25	1.68
33994932--33995019	28	3.1	28	77	6	97	18	15	30	35	1.92
34000693--34000982	51	5.7	49	74	7	240	29	25	15	29	1.96
34000693--34000982	102	2.9	102	88	1	404	29	25	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34002782--34002818	18	2.0	19	94	5	67	21	45	0	32	1.52
34003019--34003081	32	2.0	31	87	12	92	58	0	0	41	0.98
34003047--34003075	11	2.6	11	100	0	58	51	0	0	48	1.00
34003020--34003163	41	3.5	41	86	5	184	61	0	2	36	1.13
34003389--34003443	17	3.4	17	69	19	53	23	38	0	38	1.55
34003446--34003483	19	1.9	20	89	10	60	23	23	0	52	1.47
34007919--34007944	8	3.2	8	100	0	52	34	0	38	26	1.57
34011779--34011823	15	3.0	15	90	0	63	42	26	0	31	1.56
34023743--34023975	41	5.6	40	80	7	198	24	17	25	33	1.97
34023785--34023975	41	4.6	41	82	8	208	21	17	26	34	1.96
34023784--34023936	83	1.8	83	95	0	279	22	18	26	33	1.96
34031612--34031799	41	4.6	40	81	8	207	23	17	24	34	1.96
34031612--34031805	84	2.3	83	88	4	277	23	19	23	33	1.97
34037105--34037150	23	2.0	23	86	0	65	41	15	15	28	1.87
34042239--34042300	29	2.1	30	84	3	81	58	8	17	16	1.62
34052079--34052106	2	14.0	2	100	0	56	50	0	0	50	1.00
34054721--34054750	13	2.3	13	94	0	51	53	6	3	36	1.44
34055561--34055607	15	3.3	15	70	11	53	29	27	23	19	1.98
34055548--34055717	28	6.0	28	74	6	135	25	23	25	25	2.00
34056943--34056970	2	14.0	2	100	0	56	50	0	0	50	1.00
34057172--34057207	8	4.5	8	92	0	54	61	0	0	38	0.96
34059459--34059629	11	16.4	11	67	21	84	60	0	2	36	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34059433--34059559	42	3.0	41	82	13	150	60	0	2	37	1.10
34059452--34059516	31	2.1	30	94	2	112	61	0	3	35	1.12
34059508--34059597	30	2.9	31	87	12	139	61	0	2	36	1.09
34059540--34059643	40	2.6	41	85	10	121	62	0	1	35	1.06
34068904--34068953	23	2.2	23	92	0	82	26	40	8	26	1.83
34069400--34069441	14	3.2	13	80	9	50	42	4	0	52	1.22
34071335--34071424	39	2.3	39	88	3	137	36	15	16	31	1.90
34071839--34071890	24	2.3	23	83	12	63	53	13	5	26	1.62
34071939--34071967	15	2.0	15	93	6	51	34	0	10	55	1.34
34084841--34084886	22	2.2	20	85	14	58	36	0	28	34	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213