genome.fa.s14.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  38  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9968083--9968107	8	3.1	8	100	0	50	48	0	0	52	1.00
9968091--9968282	107	1.8	107	91	1	323	31	14	17	37	1.89
9969553--9969609	24	2.4	24	87	0	78	14	3	61	21	1.47
9969612--9969646	18	1.9	18	88	0	52	0	11	60	28	1.32
9969631--9969674	18	2.4	18	88	7	63	6	4	63	25	1.38
9969625--9969739	24	5.2	23	71	16	73	7	5	60	26	1.45
9969631--9969716	21	4.4	18	71	16	64	9	4	62	23	1.44
9969649--9969752	24	4.3	24	78	4	84	9	4	61	24	1.46
9969748--9969790	18	2.4	18	80	0	50	9	6	60	23	1.51
9970550--9970587	19	2.0	19	85	10	51	52	5	2	39	1.38
9970598--9970634	18	2.1	18	89	0	56	56	2	0	40	1.13
9970624--9970663	19	2.1	19	86	9	55	70	2	0	27	1.01
9970603--9970658	29	2.0	28	85	3	76	64	1	0	33	1.04
9974581--9974618	18	2.1	18	85	9	51	36	2	2	57	1.26
9975156--9975234	36	2.3	34	89	8	117	50	2	5	41	1.38
9975311--9975350	19	2.2	18	91	8	64	55	2	0	42	1.13
9975403--9975467	29	2.3	29	81	7	71	36	3	10	49	1.53
9978209--9978269	31	2.0	31	90	6	97	57	0	1	40	1.08
9978209--9978260	11	4.9	11	77	17	65	53	0	1	44	1.11
9978225--9978310	40	2.2	40	93	0	145	63	0	3	32	1.11
9987802--9987967	42	4.0	42	83	4	203	27	16	24	31	1.97
9987809--9987986	84	2.1	84	82	6	209	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9994510--9994546	16	2.3	16	90	0	56	54	0	27	18	1.44
10008762--10008937	89	2.0	89	96	0	325	32	23	8	34	1.85
10014668--10014709	18	2.3	19	80	12	52	61	7	0	30	1.22
10018425--10018468	21	2.0	22	83	12	56	29	13	9	47	1.74
10018776--10018809	17	2.0	17	94	0	59	35	32	0	32	1.58
10023284--10023310	9	3.0	9	100	0	54	44	11	0	44	1.39
10023581--10023677	48	2.0	48	97	0	185	26	18	19	35	1.95
10026171--10026238	34	2.0	34	100	0	136	35	17	23	23	1.95
10028999--10029127	37	3.5	37	97	0	240	25	19	17	37	1.94
10029091--10029359	46	5.6	46	84	10	340	28	22	14	34	1.93
10029134--10029353	52	4.3	52	85	8	290	28	22	13	35	1.92
10029091--10029359	98	2.7	98	92	0	448	28	22	14	34	1.93
10038748--10039007	23	11.1	23	77	5	243	42	17	14	26	1.87
10038689--10039007	71	4.5	70	86	4	435	42	17	13	26	1.86
10038689--10039007	141	2.3	142	91	2	509	42	17	13	26	1.86
10039661--10039732	28	2.6	28	88	0	99	29	25	12	33	1.92
10040765--10041135	138	2.7	138	75	6	356	31	16	23	28	1.96
10042570--10042621	25	2.1	25	96	0	95	23	13	7	55	1.63
10042575--10042628	25	2.2	25	86	0	72	27	12	3	55	1.54
10042947--10042985	3	13.0	3	100	0	78	33	0	0	66	0.92
10043055--10043081	9	3.0	9	100	0	54	44	11	0	44	1.39
10057956--10058046	20	4.7	19	71	17	64	40	1	2	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10058334--10058359	5	5.2	5	100	0	52	42	19	19	19	1.90
10058568--10058603	16	2.2	16	95	0	63	30	22	2	44	1.67
10058867--10058901	9	3.9	9	84	0	52	28	8	14	48	1.73
10060295--10060458	42	3.9	42	75	1	123	23	26	34	16	1.95
10061908--10061962	17	3.3	16	78	16	58	69	7	5	18	1.32
10064568--10064598	3	10.3	3	100	0	62	64	0	0	35	0.94
10064597--10064621	3	8.3	3	100	0	50	36	0	0	64	0.94
10067546--10067740	98	2.0	98	94	2	347	36	23	10	29	1.88
10068395--10068441	23	2.0	25	87	8	71	55	4	8	31	1.49
10069055--10069115	23	2.7	23	100	0	122	37	13	9	39	1.77
10090255--10090331	28	2.7	28	76	7	84	58	7	5	28	1.48
10091192--10091244	25	2.2	24	86	3	70	47	0	15	37	1.45
10091920--10091959	4	10.0	4	100	0	80	25	0	25	50	1.50
10095407--10095688	50	5.5	50	80	3	235	27	22	28	22	1.99
10102511--10102584	31	2.4	31	93	0	121	31	10	10	47	1.73
10102514--10102593	31	2.6	31	89	0	97	30	11	11	47	1.74
10107551--10107588	16	2.4	16	100	0	76	23	0	39	36	1.55
10107650--10107682	16	2.1	16	94	0	57	36	3	36	24	1.71
10114036--10114568	41	13.0	41	85	2	631	21	19	27	30	1.98
10115055--10115229	81	2.1	83	85	10	250	24	1	31	42	1.62
10115343--10115391	7	7.0	7	85	0	62	20	2	48	28	1.60
10115901--10115935	18	1.9	18	88	0	52	57	2	0	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10120367--10120491	63	2.0	63	98	0	241	28	8	6	56	1.54
10120625--10120782	42	3.7	42	84	5	210	25	16	28	29	1.97
10123168--10123214	21	2.2	22	88	11	71	23	38	17	21	1.93
10129112--10129189	23	3.3	23	73	18	72	38	2	2	56	1.27
10129236--10129331	26	3.7	26	75	9	70	28	3	5	63	1.31
10131499--10131528	15	2.1	15	93	6	53	26	0	0	73	0.84
10138014--10139596	789	2.0	789	96	0	2887	35	14	22	27	1.93
10143708--10143741	16	2.2	16	89	5	52	29	5	8	55	1.54
10144191--10144243	18	2.8	20	69	25	53	43	1	0	54	1.11
10144264--10144342	36	2.3	36	80	10	94	50	1	0	48	1.08
10144505--10144533	15	1.9	15	100	0	58	51	6	13	27	1.66
10146571--10146708	66	2.1	66	86	4	190	42	8	13	34	1.75
10149486--10149533	24	2.0	25	87	4	71	16	18	22	41	1.90
10152324--10152402	40	2.0	40	82	0	95	25	16	36	21	1.94
10152325--10152381	20	2.8	20	82	10	64	24	15	38	21	1.92
10155844--10156222	125	3.0	125	86	3	528	29	14	22	33	1.94
10155870--10156222	126	2.8	126	87	2	530	29	14	22	33	1.94
10159777--10159821	23	2.0	23	82	8	56	33	4	11	51	1.58
10160389--10160820	83	5.2	83	88	4	599	28	20	23	27	1.99
10160413--10160820	41	9.9	41	84	8	396	28	20	23	27	1.99
10162586--10162803	116	1.9	116	95	0	391	42	9	9	39	1.69
10162890--10162945	22	2.5	22	94	2	94	37	1	32	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10164932--10164965	3	11.3	3	87	0	50	32	2	2	61	1.26
10165015--10165069	20	2.5	24	77	22	66	30	5	5	58	1.44
10166507--10166606	50	2.0	50	100	0	200	52	12	20	16	1.75
10167175--10167740	155	3.7	154	90	3	872	50	8	9	30	1.66
10167745--10168058	154	2.0	154	90	4	490	31	9	7	50	1.63
10176827--10176876	3	16.7	3	100	0	100	68	0	0	32	0.90
10201641--10201666	5	5.2	5	100	0	52	42	19	19	19	1.90
10202146--10202193	19	2.6	19	78	18	57	60	0	2	37	1.09
10202282--10202333	16	3.0	16	76	23	52	44	0	30	25	1.54
10211899--10211925	5	5.4	5	100	0	54	81	0	0	18	0.69
10211899--10211934	15	2.4	15	90	0	54	77	0	2	19	0.88
10215416--10215447	15	2.0	17	88	11	50	37	12	0	50	1.41
10215559--10215611	29	1.9	28	85	11	74	39	1	0	58	1.09
10215546--10215614	36	1.9	36	82	5	86	37	1	0	60	1.06
10215613--10215683	24	2.8	25	78	20	76	29	4	1	64	1.20
10220663--10220704	21	1.9	23	90	9	70	19	23	4	52	1.65
10222067--10222456	91	4.3	91	92	1	651	28	21	15	33	1.94
10222067--10222456	46	8.6	46	94	1	655	28	21	15	33	1.94
10222067--10222456	137	2.9	137	93	1	669	28	21	15	33	1.94
10228192--10228314	28	4.4	28	92	2	185	26	12	27	33	1.92
10228217--10228328	28	4.0	27	91	3	143	29	11	25	33	1.91
10228192--10228328	55	2.4	56	85	6	170	28	11	25	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10230377--10230417	21	2.0	21	90	4	66	53	0	0	46	1.00
10247527--10247578	13	4.2	12	76	11	52	42	1	0	55	1.10
10247527--10247578	26	2.1	23	86	10	68	42	1	0	55	1.10
10247564--10247604	18	2.5	17	85	14	59	43	0	2	53	1.13
10251942--10252070	42	3.1	41	80	4	134	16	23	16	44	1.86
10252017--10252070	21	2.6	20	80	8	72	14	24	18	42	1.88
10256016--10256100	24	3.5	24	82	6	109	16	56	8	18	1.64
10264216--10264289	5	14.8	5	97	0	139	40	0	0	59	0.97
10275426--10275549	63	2.0	63	98	0	239	25	16	16	41	1.88
10276160--10276405	44	5.6	44	82	3	266	32	17	20	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213