genome.fa.s14.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  202  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60477259--60477447	59	3.2	59	70	19	201	42	3	3	50	1.38
60477286--60477484	66	3.2	66	70	19	217	41	3	6	48	1.45
60477248--60477537	120	2.4	120	97	0	544	43	2	4	49	1.37
60477209--60477501	120	2.3	129	85	12	453	43	3	5	48	1.40
60477318--60477508	61	3.2	61	69	19	191	42	3	6	48	1.44
60477322--60477505	59	3.1	59	66	20	164	42	2	6	48	1.43
60477493--60477534	15	2.9	15	82	10	52	47	0	0	52	1.00
60482809--60482839	14	2.2	14	94	0	53	48	0	6	45	1.28
60497465--60497522	29	2.0	30	86	6	84	44	13	10	31	1.78
60507090--60507135	18	2.4	18	82	7	56	39	4	30	26	1.75
60507454--60507484	6	5.2	6	100	0	62	35	0	48	16	1.46
60519800--60519836	3	12.3	3	88	0	56	62	0	5	32	1.18
60520662--60520699	20	1.9	20	88	0	58	78	0	7	13	0.94
60521229--60521425	44	4.6	44	68	9	145	25	21	21	30	1.98
60521213--60521471	128	2.0	128	96	0	473	25	21	22	30	1.98
60521234--60521560	44	7.6	43	68	13	127	24	22	21	31	1.98
60521417--60521555	43	3.2	43	73	6	154	23	22	23	31	1.98
60521674--60521873	44	4.6	44	71	3	134	27	26	19	27	1.99
60521567--60521880	131	2.4	131	90	2	497	25	24	21	28	1.99
60522153--60522210	24	2.4	24	88	0	89	31	27	8	32	1.87
60523164--60523206	6	6.7	6	89	10	59	0	18	0	81	0.69
60523164--60523207	21	2.2	19	92	8	70	0	18	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60528863--60528904	23	1.9	22	90	9	68	45	2	9	42	1.49
60528999--60529044	3	15.3	3	90	0	74	63	0	4	32	1.14
60529868--60529905	20	1.9	20	88	0	58	78	0	7	13	0.94
60531780--60532029	126	2.0	124	87	5	362	32	18	11	38	1.86
60534569--60534605	19	2.1	17	90	10	56	54	0	5	40	1.24
60537714--60537792	36	2.2	36	88	0	122	21	18	10	49	1.77
60550315--60550349	17	2.1	17	89	5	54	48	5	14	31	1.67
60550997--60551199	41	5.0	42	84	8	217	20	18	27	33	1.96
60550997--60551199	82	2.5	81	84	4	248	20	18	27	33	1.96
60552972--60553101	35	3.7	35	84	4	172	36	16	20	26	1.93
60554743--60554796	27	2.0	27	96	0	99	33	14	5	46	1.68
60554757--60555114	179	2.0	179	96	0	662	38	15	10	34	1.83
60557288--60557341	3	18.0	3	100	0	108	66	0	33	0	0.92
60558949--60558982	17	2.0	17	88	0	50	44	0	11	44	1.40
60565249--60565321	31	2.4	31	90	0	110	24	15	17	42	1.88
60565700--60565782	43	1.9	43	97	0	157	21	31	26	20	1.98
60566964--60567001	19	2.0	20	84	5	51	39	13	15	31	1.86
60569940--60569974	5	7.0	5	100	0	70	60	0	0	40	0.97
60570227--60570282	28	2.0	28	96	0	103	42	12	28	16	1.84
60571167--60571305	53	2.6	53	93	0	233	22	28	30	18	1.97
60571296--60571478	83	2.2	83	99	0	357	25	21	25	27	1.99
60572361--60572454	25	3.8	25	82	4	127	22	26	7	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60574081--60574177	28	3.5	28	88	0	140	32	12	23	30	1.92
60574631--60575321	70	9.8	70	92	2	1084	28	10	17	43	1.82
60576568--60577123	278	2.0	278	91	0	907	33	18	19	29	1.95
60577954--60578027	26	2.9	25	82	7	87	43	8	16	32	1.77
60581161--60581222	24	2.6	24	82	7	72	35	22	25	16	1.94
60585825--60585852	14	2.0	14	100	0	56	28	21	14	35	1.92
60589564--60589614	23	2.2	23	89	0	75	27	7	21	43	1.80
60592302--60593650	670	2.0	672	94	1	2373	20	17	20	40	1.91
60595170--60595354	27	6.9	27	82	0	190	35	22	20	22	1.96
60595170--60595354	54	3.4	53	81	3	217	35	22	20	22	1.96
60595210--60595364	81	1.9	81	89	0	238	37	22	19	20	1.94
60595539--60595592	26	2.1	26	89	0	81	16	16	25	40	1.89
60595549--60595604	26	2.2	26	83	0	67	12	17	32	37	1.88
60595593--60595765	32	5.4	32	85	0	213	21	20	19	38	1.94
60597767--60597839	35	2.1	36	94	2	130	43	12	16	27	1.83
60597871--60597917	24	2.0	24	87	8	69	38	6	8	46	1.60
60601004--60601035	16	1.9	17	93	6	57	9	34	6	50	1.60
60603145--60603175	16	1.9	16	93	0	53	9	6	6	77	1.12
60604278--60604308	14	2.2	14	94	0	53	38	0	12	48	1.42
60613811--60613835	12	2.1	12	100	0	50	76	8	0	16	1.02
60618991--60619047	28	2.0	28	100	0	114	56	10	10	22	1.64
60620743--60620776	3	11.3	3	100	0	68	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60625492--60625531	20	2.0	20	85	9	55	2	17	25	55	1.55
60626074--60626163	43	2.1	43	80	2	99	27	25	18	27	1.98
60626431--60626761	44	7.6	45	74	10	214	26	21	21	31	1.98
60659409--60659448	20	2.0	20	85	9	55	2	17	25	55	1.55
60665105--60665146	21	2.0	21	86	4	59	66	0	0	33	0.92
60665535--60665573	20	2.1	18	85	9	51	53	2	0	43	1.14
60665531--60665576	11	4.3	11	78	13	51	52	2	0	45	1.13
60667093--60667119	3	9.0	3	100	0	54	66	0	0	33	0.92
60669733--60669765	13	2.3	15	90	10	52	21	3	9	66	1.33
60670359--60670401	18	2.2	18	84	12	50	34	0	16	48	1.46
60672498--60672548	22	2.3	23	80	19	63	29	3	1	64	1.22
60673615--60673658	13	3.4	13	75	12	54	38	11	18	31	1.86
60675073--60675146	25	3.0	25	74	16	73	29	18	27	24	1.98
60675074--60675170	50	1.9	50	83	4	124	29	19	26	23	1.98
60675131--60675302	50	3.4	50	85	4	206	36	19	26	18	1.95
60675163--60675303	75	1.9	75	80	2	167	37	18	26	17	1.93
60675157--60675302	25	5.8	25	76	6	125	36	18	26	17	1.93
60675449--60675495	22	2.1	23	84	11	62	48	23	0	27	1.51
60679025--60679073	23	2.1	23	88	7	73	36	0	2	61	1.08
60679640--60679669	3	10.0	3	100	0	60	33	0	0	66	0.92
60688560--60688659	28	3.4	27	82	14	103	69	3	3	25	1.17
60688671--60688709	21	1.9	20	89	5	60	69	5	2	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60688928--60688984	24	2.4	25	77	11	66	19	1	3	75	1.04
60691427--60691451	9	2.8	9	100	0	50	48	0	12	40	1.40
60691551--60691598	20	2.4	20	82	6	62	54	2	0	43	1.12
60696130--60696165	4	9.0	4	93	0	63	50	22	0	27	1.50
60716067--60716117	22	2.3	22	82	0	66	66	11	7	13	1.43
60718737--60718775	20	2.0	20	90	10	62	56	5	0	38	1.22
60718833--60718893	28	2.1	29	82	8	72	59	4	4	31	1.40
60718857--60718955	18	5.7	18	69	15	66	58	5	5	31	1.41
60718948--60718988	18	2.3	18	82	0	55	70	2	4	21	1.18
60718968--60719029	29	2.1	29	85	5	81	66	1	1	30	1.11
60725471--60725966	245	2.0	245	93	0	850	35	20	15	28	1.93
60728396--60728456	27	2.2	28	86	13	83	54	1	4	39	1.32
60728532--60728564	9	3.7	9	92	8	50	48	0	9	42	1.35
60728530--60728571	18	2.3	19	80	19	54	47	4	7	40	1.52
60728899--60728963	24	2.7	24	80	7	78	40	12	3	44	1.57
60737247--60737298	5	11.0	5	80	12	65	61	0	38	0	0.96
60738127--60738363	18	13.4	17	64	18	58	33	15	10	40	1.82
60738130--60738199	34	2.1	32	89	10	106	32	14	12	40	1.84
60738178--60738219	20	2.1	20	86	8	59	38	11	9	40	1.75
60738144--60738324	54	3.4	52	75	11	154	32	16	9	41	1.81
60738199--60738326	35	3.7	34	78	11	116	32	16	8	42	1.78
60738234--60738375	35	3.9	36	78	13	150	30	16	9	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60738246--60738375	18	7.2	18	68	17	83	31	16	10	41	1.82
60738386--60738425	19	2.2	18	86	4	53	47	2	7	42	1.45
60738405--60738498	16	5.4	17	72	13	66	38	9	10	41	1.72
60738386--60738480	39	2.6	37	83	9	106	40	9	10	40	1.72
60738399--60738480	19	4.4	19	71	11	64	39	10	10	39	1.76
60738405--60738558	55	2.8	54	75	12	143	38	7	11	42	1.70
60738405--60738476	20	3.9	18	74	15	58	36	11	12	40	1.79
60756940--60757042	36	2.9	35	77	4	98	59	0	38	0	1.11
60756991--60757042	5	11.0	5	80	12	65	61	0	38	0	0.96
60757867--60757903	17	2.2	17	90	0	56	37	8	10	43	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213