genome.fa.s14.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  172  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51771195--51771251	27	2.1	27	90	0	87	26	29	14	29	1.95
51771601--51771686	45	1.9	45	82	0	109	22	22	13	41	1.88
51774014--51774084	24	2.9	25	77	12	92	23	28	22	25	2.00
51774016--51774094	25	3.2	24	75	21	74	22	26	21	29	1.99
51785671--51785712	21	2.0	21	85	4	57	45	28	9	16	1.79
51787068--51787097	15	1.9	16	93	6	53	20	10	6	63	1.47
51809425--51809463	8	4.8	8	85	14	53	25	10	2	61	1.41
51809417--51809458	18	2.3	19	88	12	70	28	11	4	54	1.57
51812210--51812264	18	3.1	18	75	15	51	58	3	5	32	1.38
51812251--51812288	10	4.0	10	83	10	53	65	0	2	31	1.06
51812233--51812288	28	2.0	28	83	13	71	62	1	5	30	1.28
51812253--51812299	24	2.0	23	91	8	76	65	0	4	29	1.11
51812851--51812891	16	2.6	16	81	14	57	82	0	7	9	0.83
51818779--51818877	37	2.8	34	79	15	103	30	24	6	39	1.79
51823774--51823852	25	3.2	25	83	1	88	21	26	20	31	1.98
51823784--51823871	25	3.6	25	80	4	90	22	23	21	31	1.98
51825772--51825817	23	2.0	23	95	0	83	28	26	8	36	1.86
51829999--51830033	14	2.4	15	95	4	63	45	0	0	54	0.99
51835654--51835701	19	2.5	19	83	13	62	35	0	0	64	0.94
51835795--51835870	28	2.7	28	78	13	75	39	2	2	55	1.28
51835842--51835882	21	2.0	20	85	4	55	31	0	7	60	1.24
51838500--51838676	93	1.9	93	88	2	266	25	15	21	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51841817--51841854	11	3.5	11	82	10	51	63	5	31	0	1.17
51844421--51844518	49	2.0	49	100	0	196	30	20	14	34	1.92
51845232--51845296	20	3.2	20	76	10	69	44	1	0	53	1.09
51845262--51845304	17	2.5	17	80	0	50	51	0	2	46	1.13
51847727--51847839	51	2.2	51	93	0	190	29	21	15	34	1.93
51850624--51850710	27	3.0	30	70	11	90	41	9	9	40	1.69
51855960--51855994	16	2.2	16	94	0	61	45	11	20	22	1.82
51860646--51860688	23	1.9	22	86	13	61	37	0	23	39	1.55
51861584--51861674	25	3.6	25	84	0	101	26	25	18	29	1.98
51869131--51869278	49	3.0	49	76	11	165	25	16	22	35	1.95
51870433--51870461	13	2.2	13	100	0	58	17	0	24	58	1.38
51878499--51878615	45	2.6	45	80	2	119	23	17	11	47	1.80
51880251--51880319	27	2.6	28	88	4	90	27	34	14	23	1.94
51882505--51882554	22	2.3	21	80	6	55	38	4	2	56	1.30
51883211--51883256	17	2.9	15	80	20	58	65	6	0	28	1.17
51884339--51884382	2	22.5	2	90	4	72	52	0	47	0	1.00
51885677--51885764	30	2.8	30	81	10	79	42	4	4	48	1.44
51887871--51887928	22	2.6	22	84	7	73	43	17	3	36	1.66
51887900--51887990	17	5.0	17	76	15	67	38	17	7	36	1.79
51887898--51887965	21	3.4	22	84	15	94	36	17	7	38	1.78
51888390--51889409	132	7.7	132	93	0	1629	24	23	19	32	1.98
51888447--51889400	44	21.7	44	64	10	263	24	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51889423--51889624	44	4.6	45	78	11	222	31	25	16	26	1.97
51895110--51895216	19	5.2	21	81	10	73	42	14	6	36	1.72
51895110--51895167	22	2.6	22	84	7	73	43	17	3	36	1.66
51895123--51895220	19	4.8	19	83	9	115	39	15	7	37	1.75
51898725--51898815	38	2.4	38	88	0	128	34	24	23	18	1.96
51900620--51900682	30	2.1	30	90	0	99	22	3	15	58	1.51
51900804--51900834	11	2.8	11	90	0	53	67	0	0	32	0.91
51904173--51904444	94	2.9	94	85	0	346	37	18	17	27	1.92
51904181--51904603	94	4.5	95	76	4	295	39	18	15	26	1.90
51905052--51905108	30	1.9	30	82	7	71	24	31	22	21	1.98
51905845--51905943	41	2.4	42	83	11	134	34	15	29	21	1.94
51908504--51908565	32	1.9	33	86	3	90	35	0	4	59	1.19
51911266--51911290	12	2.1	12	100	0	50	24	36	24	16	1.94
51911452--51911493	9	4.7	9	87	0	66	42	23	9	23	1.83
51911452--51911493	18	2.3	18	100	0	84	42	23	9	23	1.83
51911531--51911643	6	18.8	6	100	0	226	16	0	16	66	1.26
51911536--51911656	18	6.6	20	97	1	163	18	0	14	66	1.24
51911684--51911727	18	2.4	18	88	0	61	13	2	43	40	1.57
51916356--51916439	25	3.4	25	79	0	105	23	25	21	29	1.99
51916357--51916469	50	2.3	50	82	3	129	25	23	22	29	1.99
51919274--51919325	27	2.0	26	84	3	68	38	19	0	42	1.51
51919210--51919446	90	2.6	92	86	2	298	41	14	0	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51926329--51926382	27	2.0	28	89	7	85	24	31	0	44	1.54
51926759--51926821	13	5.2	12	71	19	51	34	3	0	61	1.12
51927410--51927441	14	2.2	15	94	5	57	50	6	12	31	1.65
51927409--51927446	14	2.8	13	85	14	51	44	5	13	36	1.66
51927494--51927610	56	2.1	56	84	10	150	37	3	4	54	1.37
51928951--51929005	28	2.0	28	82	13	69	50	1	12	34	1.51
51929054--51929089	18	2.1	16	90	10	54	61	0	5	33	1.19
51930383--51930430	17	3.0	15	75	24	53	14	0	4	81	0.84
51931046--51931136	46	2.0	46	97	0	173	28	20	17	32	1.96
51936378--51936406	6	4.8	6	100	0	58	68	13	0	17	1.20
51936405--51936440	7	5.1	7	93	0	63	52	0	16	30	1.44
51936795--51936833	18	2.1	19	90	4	62	56	5	7	30	1.49
51937404--51937442	12	3.2	12	89	7	60	56	0	0	43	0.99
51938029--51938092	15	4.3	15	75	16	62	39	4	3	53	1.38
51938104--51938149	24	1.9	25	82	8	60	43	4	6	45	1.49
51945386--51945503	36	3.3	36	81	2	130	37	35	11	15	1.84
51949811--51949850	21	2.0	20	85	5	53	47	5	2	45	1.38
51951291--51951318	14	2.0	14	100	0	56	7	14	28	50	1.69
51975906--51975966	23	2.7	23	86	0	77	16	14	26	42	1.87
51977765--51977867	54	1.9	54	97	0	197	32	23	17	27	1.97
51998672--51998714	18	2.4	18	77	14	52	46	6	9	37	1.63
51999163--51999340	28	6.4	28	89	2	234	25	13	28	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52007369--52007494	28	4.5	28	93	1	200	26	13	28	31	1.94
52016895--52016924	12	2.5	12	94	0	51	23	40	30	6	1.80
52021800--52021940	42	3.4	42	81	0	174	25	20	23	30	1.98
52028759--52028796	15	2.5	15	86	0	58	36	5	0	57	1.21
52029751--52029811	3	20.3	3	96	0	113	32	1	0	65	1.02
52038406--52038476	28	2.4	29	79	9	83	47	14	9	28	1.75
52038811--52038949	68	2.0	68	100	0	278	48	5	2	42	1.41
52038955--52039030	18	4.2	17	76	18	57	63	2	1	32	1.17
52038955--52039126	20	8.7	19	67	21	70	59	4	1	34	1.26
52039041--52039128	20	4.4	20	73	9	81	57	2	2	37	1.23
52039661--52039832	10	17.2	10	69	8	91	27	5	4	62	1.37
52039683--52039734	11	5.0	11	75	11	56	25	1	3	69	1.16
52039949--52039984	19	2.0	18	89	10	56	22	0	8	69	1.15
52040343--52040436	9	10.4	9	81	11	104	32	0	2	64	1.05
52040343--52040436	28	3.5	26	81	14	102	32	0	2	64	1.05
52040352--52040436	19	4.7	18	78	9	93	34	0	1	64	1.01
52043011--52043201	98	1.9	98	91	2	312	36	24	10	28	1.89
52045414--52045540	41	3.1	40	81	7	132	33	27	14	24	1.95
52049159--52049200	18	2.3	18	87	0	66	16	28	11	42	1.84
52049229--52049604	165	2.3	165	91	0	556	23	21	17	38	1.93
52049966--52050028	18	3.5	18	82	8	74	22	26	9	41	1.84
52049976--52050047	18	4.0	18	81	3	56	25	23	6	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52050238--52051242	192	5.0	193	79	8	991	23	23	15	38	1.92
52050646--52051242	210	2.8	209	86	2	797	22	22	15	39	1.92
52051305--52051354	18	2.8	18	87	0	64	24	26	10	40	1.86
52052119--52052154	18	2.0	18	88	0	54	27	22	11	38	1.88
52052829--52057181	899	4.8	898	96	0	7716	26	17	15	40	1.90
52057926--52057967	18	2.3	18	87	0	57	16	35	14	33	1.89
52057780--52058248	198	2.4	198	88	2	683	26	27	15	30	1.96
52058207--52058282	33	2.3	33	86	0	107	26	23	19	30	1.98
52058391--52058761	198	1.9	198	92	0	625	26	29	14	29	1.95
52058703--52058747	18	2.5	18	77	0	54	22	35	13	28	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213