genome.fa.s14.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  75  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20341425--20341588	27	6.1	27	86	2	213	21	18	21	38	1.94
20341916--20342044	29	4.7	28	79	13	117	33	1	0	65	1.02
20341976--20342038	18	3.3	19	72	17	58	26	0	0	73	0.84
20341917--20342026	27	4.2	26	78	15	111	30	1	0	67	1.01
20341905--20342038	39	3.5	39	77	18	138	31	1	0	67	1.00
20341906--20342033	24	5.0	25	73	23	108	32	1	0	65	1.02
20341937--20342038	50	2.1	47	85	12	136	29	0	0	69	0.95
20341915--20342064	29	5.4	29	75	17	79	32	1	1	64	1.10
20344012--20344050	20	2.0	20	100	0	78	38	5	25	30	1.78
20345626--20345815	42	4.5	42	76	0	128	40	20	16	23	1.91
20345690--20345815	42	3.0	41	84	2	144	38	19	17	23	1.93
20346728--20346850	52	2.4	52	100	0	246	40	8	9	40	1.69
20353640--20353700	25	2.5	24	84	5	70	50	14	13	21	1.76
20355697--20355735	14	2.7	15	84	7	55	38	10	7	43	1.67
20363573--20363611	19	2.0	20	90	5	62	46	0	0	53	1.00
20364635--20364948	108	2.9	110	88	6	428	38	14	15	30	1.88
20367196--20368046	106	8.1	107	85	7	1069	30	16	13	39	1.87
20367196--20368046	215	4.1	213	85	8	1110	30	16	13	39	1.87
20367863--20368044	88	2.0	92	86	8	255	28	17	16	37	1.91
20377038--20377388	146	2.4	147	80	2	384	38	13	10	37	1.80
20387774--20387808	15	2.4	15	90	4	54	48	0	8	42	1.33
20391744--20391787	21	2.1	21	83	8	54	18	4	0	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20391761--20391802	17	2.5	17	84	0	57	16	7	0	76	1.00
20391751--20391814	27	2.3	26	82	10	67	20	6	0	73	1.04
20392824--20392856	17	1.9	17	93	0	57	87	0	12	0	0.53
20392824--20392857	9	3.9	9	84	7	52	88	0	11	0	0.52
20397478--20397653	50	3.5	50	77	0	199	22	19	23	33	1.97
20397471--20397686	100	2.2	100	88	0	333	24	19	24	31	1.98
20397474--20397686	50	4.3	50	76	0	156	24	20	23	31	1.98
20397689--20397774	44	2.0	44	83	0	109	22	29	22	26	1.99
20397704--20397937	85	2.8	85	85	1	254	29	22	18	29	1.97
20397750--20397896	41	3.5	41	71	12	127	32	21	19	27	1.97
20397784--20397930	44	3.4	44	71	9	131	30	23	14	31	1.94
20397844--20398254	217	1.9	216	85	4	578	26	22	19	31	1.98
20398145--20398480	130	2.6	130	93	0	582	23	22	22	31	1.99
20409688--20409722	18	2.0	18	88	5	54	22	0	8	68	1.16
20409970--20410044	3	25.0	3	91	5	125	68	0	32	0	0.90
20411567--20411630	28	2.2	29	81	8	78	48	14	0	37	1.44
20411673--20411827	41	3.7	42	79	9	158	50	12	5	30	1.62
20415193--20415488	151	2.0	152	95	0	540	27	14	16	41	1.87
20418304--20418365	26	2.3	27	83	8	74	38	8	17	35	1.80
20418736--20418790	9	5.6	9	78	19	56	30	20	1	47	1.60
20422549--20423034	57	8.6	56	75	8	326	35	13	17	32	1.90
20433841--20433953	59	1.9	59	81	0	136	39	13	15	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20433831--20434038	116	1.8	114	82	2	272	37	12	16	32	1.87
20433553--20434049	57	8.8	56	73	10	244	36	12	17	32	1.88
20448061--20448112	24	2.2	24	89	0	77	55	9	1	32	1.43
20450031--20450082	24	2.2	24	89	0	77	55	9	1	32	1.43
20455559--20455592	16	2.1	16	88	0	50	38	5	29	26	1.80
20455803--20455844	16	2.6	16	85	7	50	45	0	0	54	0.99
20455749--20455888	61	2.3	58	85	4	172	50	1	3	44	1.28
20455922--20455970	24	2.0	24	85	14	66	46	2	0	51	1.12
20464801--20464839	18	2.2	17	86	13	53	33	0	20	46	1.51
20464958--20464986	8	3.6	8	100	0	58	24	13	27	34	1.93
20465073--20465145	23	3.2	23	92	0	128	23	21	24	30	1.99
20472154--20472192	18	2.2	17	86	13	53	33	0	20	46	1.51
20472311--20472339	8	3.6	8	100	0	58	24	13	27	34	1.93
20472426--20472498	23	3.2	23	92	0	128	23	21	24	30	1.99
20473986--20474014	6	4.8	6	100	0	58	17	13	0	68	1.20
20475825--20475864	21	1.9	21	94	0	71	60	12	12	15	1.60
20478107--20478414	47	6.5	47	93	1	490	28	29	8	32	1.87
20482589--20482626	20	1.9	20	94	0	67	50	7	5	36	1.54
20483006--20483047	17	2.5	17	84	0	57	23	21	0	54	1.44
20483325--20483508	43	4.3	43	84	7	225	29	27	16	26	1.97
20486044--20486085	21	2.0	21	90	9	68	59	0	9	30	1.29
20488210--20488235	5	5.2	5	100	0	52	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20489188--20489271	27	3.3	27	79	14	106	42	3	0	53	1.18
20489191--20489238	15	3.4	15	68	26	50	37	4	0	58	1.18
20489603--20489643	21	1.9	22	85	5	57	41	39	0	19	1.52
20489627--20489688	27	2.3	27	86	8	83	38	40	3	17	1.66
20489658--20489832	74	2.3	74	86	6	224	45	26	1	26	1.63
20489912--20489944	14	2.3	15	94	5	59	36	33	0	30	1.58
20490331--20490765	41	10.6	41	85	3	495	32	24	20	22	1.98
20495016--20495076	9	6.6	9	74	18	54	36	0	3	60	1.13
20495020--20495075	20	2.9	19	82	10	69	35	0	3	60	1.14
20495047--20495109	19	3.3	19	76	12	58	30	1	1	66	1.10
20495085--20495125	15	2.6	16	88	7	57	24	0	2	73	0.96
20510253--20510373	59	2.1	59	100	0	242	41	12	13	33	1.81
20516747--20516776	10	3.0	10	95	0	51	50	3	26	20	1.64
20521426--20521496	35	2.0	35	83	5	90	47	18	19	14	1.82
20524136--20524177	21	2.0	21	95	0	75	33	11	21	33	1.90
20528049--20528207	45	3.6	44	85	5	187	22	15	27	35	1.94
20533701--20533739	18	2.2	18	85	0	51	61	2	23	12	1.43
20553089--20553137	3	16.3	3	100	0	98	67	0	0	32	0.91
20553567--20553604	7	5.4	7	96	0	58	0	5	28	65	1.14
20553567--20553607	14	2.9	14	92	0	64	0	7	29	63	1.21
20554013--20554172	81	2.0	81	85	2	214	32	11	14	41	1.82
20557933--20557981	11	4.5	11	78	19	57	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20557939--20558008	5	12.0	6	70	27	53	47	1	1	50	1.19
20557932--20558007	16	4.4	16	76	15	80	46	2	1	50	1.24
20557939--20558008	11	6.5	11	69	27	53	47	1	1	50	1.19
20565596--20565656	30	2.1	28	87	6	86	29	21	24	24	1.99
20566031--20566093	27	2.3	26	78	5	63	22	15	22	39	1.92
20566063--20566270	27	7.7	27	85	2	249	18	18	20	43	1.89
20566063--20566293	81	2.8	80	83	3	293	18	16	21	43	1.88
20572706--20572791	29	2.9	28	79	8	82	39	8	9	43	1.67
20572727--20572797	30	2.4	30	80	2	81	38	8	11	42	1.71
20577283--20577340	30	1.9	30	89	0	89	12	27	36	24	1.91
20589747--20589785	3	13.0	3	94	0	60	61	0	38	0	0.96
20592188--20592236	25	2.0	25	84	8	64	12	18	20	48	1.79
20593211--20593483	67	4.0	67	89	3	415	50	7	9	32	1.63
20593266--20593295	12	2.5	12	100	0	60	60	10	6	23	1.52
20593335--20593364	12	2.5	12	100	0	60	60	10	0	30	1.30
20593211--20593457	136	1.8	136	93	1	433	50	7	9	32	1.63
20593947--20594050	49	2.1	49	87	0	145	29	8	11	50	1.69
20595525--20595606	26	2.9	28	80	10	87	42	0	1	56	1.07
20595438--20595700	120	2.3	114	89	7	385	43	1	4	50	1.30
20595828--20595932	44	2.5	41	76	18	133	38	28	2	30	1.72
20595838--20595929	44	2.0	46	89	4	143	39	27	3	30	1.72
20599210--20599298	37	2.4	37	94	0	160	43	14	7	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20599490--20599555	33	2.0	33	100	0	132	42	15	6	36	1.71
20602561--20602768	91	2.3	91	93	0	344	46	3	4	46	1.39
20602683--20602743	28	2.2	28	85	5	81	45	0	3	50	1.17
20602601--20602743	44	3.2	43	69	20	121	46	2	3	48	1.31
20602773--20603201	120	3.6	120	94	0	716	43	2	5	49	1.37
20602905--20602939	18	2.0	17	88	5	52	45	0	0	54	0.99
20603029--20603080	15	3.6	15	80	12	56	44	0	1	53	1.11
20603158--20603199	15	2.7	16	82	14	52	45	0	2	52	1.13
20603149--20603190	15	2.9	15	82	10	52	47	0	0	52	1.00
20603413--20603445	16	2.1	16	94	0	57	24	36	3	36	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213