genome.fa.s14.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  194  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58177089--58177196	19	5.5	19	87	4	144	40	15	6	37	1.73
58177089--58177203	38	2.9	38	90	5	167	40	15	6	37	1.75
58177112--58177203	19	4.8	19	91	0	148	39	15	7	38	1.76
58177421--58177479	28	2.1	28	81	12	68	27	0	8	64	1.22
58177632--58177675	17	2.5	17	81	3	52	25	0	13	61	1.32
58181130--58181193	12	5.1	12	83	9	65	26	15	10	46	1.79
58181130--58181169	14	3.1	13	86	10	55	22	17	10	50	1.76
58190303--58190367	30	2.2	30	91	0	103	20	26	30	23	1.98
58190431--58190617	67	2.8	66	83	0	239	22	27	24	26	2.00
58193690--58193805	40	2.9	39	79	3	142	17	15	25	41	1.89
58196658--58196765	5	21.4	5	99	0	207	40	0	0	59	0.98
58197703--58197804	37	2.6	40	80	6	120	27	17	25	29	1.98
58199483--58199516	17	2.0	17	88	0	50	41	5	17	35	1.74
58201439--58201731	145	2.0	145	98	0	568	30	23	8	37	1.85
58202732--58202820	4	22.2	4	97	0	169	50	23	0	25	1.49
58206196--58206824	132	4.8	132	83	2	681	26	24	18	30	1.98
58218685--58218734	15	3.4	14	80	5	55	58	2	8	32	1.39
58220432--58221060	132	4.8	132	83	2	690	26	24	18	30	1.98
58233235--58233284	15	3.4	14	80	5	55	58	2	8	32	1.39
58235000--58235628	132	4.8	132	83	2	690	26	24	18	30	1.98
58247810--58247859	15	3.4	14	80	5	55	58	2	8	32	1.39
58249570--58250198	132	4.8	132	83	2	690	26	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58262651--58262712	20	3.2	20	74	2	63	66	1	6	25	1.25
58263390--58263430	19	2.2	19	86	4	57	82	2	2	12	0.86
58268710--58268783	24	3.0	25	68	28	66	39	4	2	54	1.34
58269263--58269323	30	2.1	28	82	11	70	32	3	9	54	1.50
58283982--58284035	20	2.7	19	83	11	63	35	5	9	50	1.58
58284881--58284922	21	2.0	22	85	4	59	40	2	2	54	1.26
58285232--58285282	21	2.4	22	80	9	61	62	1	0	35	1.06
58289075--58289112	19	2.1	19	90	5	60	39	0	2	57	1.12
58292458--58292511	17	3.3	17	72	17	60	16	9	1	72	1.19
58292465--58292511	14	3.1	15	74	14	51	17	10	0	72	1.12
58302481--58302510	16	1.9	15	93	6	51	53	0	0	46	1.00
58307627--58307652	6	4.3	6	100	0	52	50	0	50	0	1.00
58324517--58324580	20	3.2	19	79	16	67	46	9	6	37	1.61
58326210--58326367	50	3.3	51	85	9	190	28	22	14	34	1.94
58326263--58326374	44	2.5	44	95	0	197	29	21	16	33	1.95
58333442--58333480	20	2.0	20	85	10	53	41	12	0	46	1.42
58354012--58354078	32	2.1	32	100	0	134	37	25	13	23	1.92
58358967--58359010	21	2.1	21	86	0	61	27	0	4	68	1.09
58365857--58365892	18	2.0	18	100	0	72	16	11	33	38	1.84
58367108--58367175	34	2.0	34	100	0	136	44	20	17	17	1.87
58368854--58368878	13	1.9	13	100	0	50	48	0	12	40	1.40
58368933--58368972	19	2.1	19	86	9	55	55	5	5	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58369482--58369597	61	1.9	58	80	11	128	43	4	5	46	1.45
58372210--58372260	21	2.4	21	86	0	66	70	3	0	25	1.04
58376065--58376094	9	3.3	9	90	0	51	30	3	13	53	1.56
58379550--58379601	26	2.0	26	88	0	77	26	34	17	21	1.95
58381114--58381173	30	2.0	30	83	3	75	41	0	38	20	1.52
58381395--58381449	9	6.1	9	91	0	92	29	12	12	45	1.79
58384808--58385031	110	2.0	110	89	0	340	37	16	16	29	1.91
58387491--58387547	29	2.0	29	89	6	89	43	0	3	52	1.18
58387608--58387660	8	6.4	8	85	8	52	33	0	1	64	1.05
58387480--58387727	123	2.0	123	96	0	460	48	1	9	40	1.44
58387614--58387670	29	2.0	29	82	6	71	40	0	3	56	1.17
58387729--58387800	33	2.2	32	88	11	103	40	1	6	51	1.37
58388924--58388977	18	3.1	17	81	7	63	44	0	18	37	1.50
58389072--58389172	37	2.6	37	79	7	103	26	18	22	31	1.97
58391793--58391835	21	2.0	21	100	0	86	44	0	13	41	1.44
58395309--58395364	17	3.3	17	87	0	85	50	0	7	42	1.30
58403222--58403247	12	2.2	12	100	0	52	34	23	19	23	1.96
58403366--58403416	24	2.2	24	83	10	63	43	17	5	33	1.73
58409213--58409359	61	2.5	59	81	6	165	48	5	0	45	1.30
58411084--58411444	179	2.0	178	89	2	555	30	14	18	36	1.91
58413484--58413559	38	2.0	38	97	0	143	17	23	19	39	1.92
58417335--58417371	17	2.2	17	90	9	58	18	5	0	75	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58419439--58419508	19	3.6	19	72	11	70	54	5	14	25	1.62
58419429--58419507	38	2.1	39	92	2	133	50	7	12	29	1.68
58420632--58420657	11	2.4	11	100	0	52	0	7	0	92	0.39
58421360--58421414	23	2.4	22	79	11	56	23	5	10	60	1.51
58421450--58421489	16	2.5	16	87	0	53	40	12	0	47	1.41
58423354--58423389	19	2.0	18	89	10	56	27	0	0	72	0.85
58424981--58425047	22	2.9	22	74	10	71	43	16	13	26	1.85
58427859--58427898	20	2.1	18	86	9	53	65	0	0	35	0.93
58431154--58431192	15	2.4	16	87	8	53	35	0	0	64	0.94
58435447--58435507	29	2.1	29	100	0	122	40	21	21	16	1.91
58436495--58436559	27	2.4	27	78	2	76	10	13	40	35	1.80
58439650--58439696	22	2.0	24	84	8	62	21	10	12	55	1.67
58446376--58446470	41	2.3	41	96	0	172	28	20	27	24	1.99
58446640--58446815	41	4.3	41	93	0	298	28	19	27	23	1.98
58449189--58449288	43	2.3	43	93	3	166	18	18	30	34	1.94
58449703--58449757	20	2.7	20	88	2	83	5	43	14	36	1.69
58449764--58449807	21	2.1	21	91	0	70	4	43	18	34	1.70
58449792--58449932	66	2.1	66	84	5	178	14	26	17	40	1.89
58449827--58449955	66	2.0	66	85	3	179	16	23	17	42	1.88
58455408--58455775	9	42.7	9	67	22	186	32	0	22	44	1.57
58455408--58455775	25	14.2	26	78	15	269	32	0	22	44	1.57
58455466--58455493	13	2.2	13	100	0	56	35	0	25	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58455457--58455546	22	4.1	22	74	21	82	34	1	21	43	1.60
58455521--58455671	19	8.5	19	62	25	62	33	0	21	45	1.57
58455695--58455778	43	2.0	43	85	0	114	26	0	25	48	1.51
58455897--58455977	12	7.5	11	68	28	50	51	2	0	45	1.14
58458320--58458401	41	2.0	42	83	9	107	34	23	12	30	1.91
58459087--58459112	9	2.9	9	100	0	52	34	46	0	19	1.50
58459082--58459175	39	2.4	40	83	7	120	39	39	2	19	1.63
58460238--58460294	22	2.5	22	86	8	71	49	36	1	12	1.51
58460238--58460299	7	8.4	7	82	10	70	50	35	1	12	1.51
58460238--58460299	15	4.2	14	82	10	70	50	35	1	12	1.51
58460583--58461136	114	4.9	113	80	8	524	27	25	23	23	2.00
58475322--58475375	28	2.0	27	85	3	72	25	3	1	68	1.16
58475408--58475447	17	2.4	17	87	8	55	15	7	0	77	0.98
58484785--58485249	44	10.2	44	70	15	211	27	21	18	32	1.96
58484812--58485240	142	3.0	142	96	0	786	27	20	18	33	1.96
58485015--58485196	98	1.9	97	80	6	215	29	19	18	32	1.96
58485231--58486102	131	6.7	131	92	0	1406	23	24	21	30	1.99
58488338--58488378	13	3.0	15	86	13	54	78	0	14	7	0.96
58489294--58489439	37	4.0	37	91	1	233	24	22	15	36	1.93
58489403--58489625	52	4.6	46	87	7	257	28	22	13	34	1.93
58489446--58489619	52	3.3	52	91	1	267	27	23	13	35	1.92
58489403--58489619	104	2.1	100	85	6	285	27	23	13	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58492123--58492316	95	2.0	95	92	2	318	27	23	18	30	1.97
58492374--58494777	88	27.3	88	91	0	3518	26	25	22	26	2.00
58501433--58501473	14	2.7	15	75	24	50	78	0	17	4	0.93
58503081--58503121	1	41.0	1	85	0	55	0	7	0	92	0.38
58503081--58503121	10	4.2	10	96	3	75	0	7	0	92	0.38
58503072--58503116	20	2.2	20	92	0	72	2	11	0	86	0.65
58503965--58504047	25	3.5	24	74	21	68	13	8	12	66	1.45
58503965--58504049	6	14.3	6	72	10	50	12	8	11	67	1.43
58503987--58504045	31	1.9	31	85	0	82	10	10	10	69	1.37
58508598--58508655	26	2.2	26	84	6	71	60	0	3	36	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213