genome.fa.s14.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  126  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36532374--36532428	20	2.8	20	81	10	67	25	20	16	38	1.92
36536961--36537056	50	1.9	50	84	0	129	28	22	28	20	1.99
36545204--36545475	40	6.8	40	93	1	454	23	29	21	26	1.99
36545204--36545483	122	2.3	122	93	1	467	23	28	21	26	1.99
36550597--36550673	26	3.0	25	80	12	84	33	19	9	37	1.83
36553941--36554059	45	2.7	45	80	6	136	33	22	12	31	1.91
36559193--36559392	45	4.4	45	83	4	226	35	24	12	28	1.91
36563392--36563614	39	5.7	40	84	8	257	25	21	27	25	2.00
36563392--36563614	79	2.8	81	82	9	273	25	21	27	25	2.00
36563392--36563647	79	3.3	79	80	10	208	26	21	27	24	1.99
36570676--36570898	79	2.8	81	81	9	264	25	21	27	25	1.99
36570676--36570898	39	5.7	40	84	6	253	25	21	27	25	1.99
36570676--36570931	79	3.3	79	79	10	199	26	21	27	25	1.99
36584643--36584706	32	2.0	32	87	6	94	28	1	7	62	1.32
36585502--36585582	31	2.6	31	80	0	90	19	27	30	22	1.98
36591511--36591559	5	9.8	5	86	0	62	22	53	0	24	1.47
36597423--36597462	14	2.9	14	84	0	53	32	7	17	42	1.77
36597431--36597497	34	1.9	35	90	3	109	31	8	13	46	1.74
36597446--36597485	20	2.0	20	90	0	62	27	10	12	50	1.72
36597425--36597501	14	5.0	15	71	20	52	32	9	15	42	1.78
36597629--36597679	26	2.2	24	78	21	56	60	5	0	33	1.21
36599903--36599938	6	6.0	6	96	0	54	38	0	61	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36599907--36599941	17	2.1	17	88	0	52	40	0	60	0	0.97
36600996--36601024	13	2.2	13	100	0	58	37	17	13	31	1.89
36603057--36603171	54	2.1	54	98	0	221	39	19	6	34	1.78
36603317--36603505	51	3.8	49	82	4	189	31	26	14	26	1.95
36610048--36610149	27	3.8	27	85	0	132	23	14	21	40	1.90
36619754--36619826	22	3.3	22	72	14	69	26	12	23	38	1.90
36620173--36620231	31	2.0	29	83	12	75	22	8	16	52	1.70
36621166--36621427	135	1.9	134	93	0	452	31	19	13	34	1.91
36624963--36624988	7	3.7	7	100	0	52	15	11	0	73	1.11
36630019--36630075	30	1.9	30	92	0	96	38	19	14	28	1.90
36642638--36642783	40	3.7	40	84	7	181	23	22	27	26	2.00
36642638--36642806	80	2.1	80	81	7	193	25	21	26	26	2.00
36646051--36646078	4	7.0	4	100	0	56	75	0	0	25	0.81
36647433--36647484	23	2.3	22	75	21	54	9	23	1	65	1.32
36647478--36647516	18	2.2	18	85	0	51	12	23	2	61	1.43
36649878--36649905	4	7.0	4	100	0	56	75	0	0	25	0.81
36655656--36655801	40	3.7	40	84	7	181	23	22	27	26	2.00
36655656--36655834	80	2.2	80	81	6	195	25	21	26	25	2.00
36661210--36661258	18	2.6	19	78	18	57	22	2	2	73	1.04
36661209--36661258	22	2.3	22	83	10	66	22	2	2	74	1.03
36667940--36667987	25	1.9	25	87	8	71	20	20	22	35	1.96
36668180--36668241	31	2.1	30	82	11	74	43	8	16	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36672151--36672229	37	2.1	37	92	0	131	15	11	31	41	1.82
36676522--36676703	45	4.1	45	87	4	210	24	18	25	32	1.97
36690546--36690596	21	2.4	21	90	0	75	33	3	15	47	1.64
36694221--36694290	24	3.0	23	81	8	70	37	4	5	52	1.45
36699950--36699984	7	5.0	7	86	13	54	68	0	17	14	1.21
36701460--36701548	44	2.0	44	84	0	115	31	21	22	24	1.98
36701332--36701886	142	3.9	142	92	0	912	32	18	21	28	1.96
36701744--36701837	44	2.1	44	90	0	143	29	21	23	25	1.99
36701758--36701857	44	2.3	44	80	3	121	33	20	19	28	1.96
36701954--36702228	50	5.5	50	76	1	282	33	22	19	24	1.97
36701934--36702244	100	3.1	100	95	0	532	31	23	19	25	1.98
36703917--36703971	24	2.3	24	84	6	67	38	5	7	49	1.54
36707460--36707503	22	2.0	22	82	4	54	45	25	18	11	1.82
36712355--36712389	18	1.9	18	88	11	54	22	20	0	57	1.41
36713322--36713358	11	3.2	12	85	14	51	13	5	8	72	1.24
36713437--36713465	10	2.7	11	94	5	51	6	3	6	82	0.93
36716881--36716914	18	1.9	18	88	5	52	23	20	0	55	1.43
36718639--36718685	20	2.3	20	85	0	67	29	36	12	21	1.91
36721296--36721401	48	2.2	47	85	9	135	59	1	24	14	1.45
36723071--36723117	20	2.3	20	85	0	67	29	36	12	21	1.91
36727608--36727637	11	2.6	12	94	5	53	6	3	6	83	0.90
36731567--36731597	15	2.1	15	93	0	53	54	25	0	19	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36735024--36735196	46	3.7	46	79	13	210	30	30	18	21	1.97
36735031--36735200	93	1.8	93	96	0	313	29	29	19	21	1.98
36735027--36735218	46	4.2	45	73	17	146	29	28	19	22	1.98
36742590--36742759	93	1.8	93	89	2	270	29	28	18	22	1.98
36742583--36742754	46	3.7	45	77	13	179	30	29	18	22	1.97
36746540--36746584	22	2.0	22	95	0	81	15	35	11	37	1.83
36754191--36754242	27	1.9	27	84	7	70	51	13	1	32	1.52
36756347--36756465	43	2.8	42	75	11	116	31	15	23	28	1.96
36758706--36758766	28	2.2	27	82	5	77	22	22	26	27	1.99
36759485--36759524	20	2.0	20	85	9	55	32	5	17	45	1.70
36763548--36763595	16	3.1	15	82	8	51	16	10	0	72	1.10
36764535--36764561	12	2.2	12	100	0	54	7	22	44	25	1.79
36772590--36772704	29	4.0	29	76	6	101	31	26	13	28	1.94
36772771--36772806	19	1.9	19	88	5	56	16	38	19	25	1.92
36778122--36778212	44	2.1	44	100	0	182	18	24	21	35	1.96
36779215--36779340	46	2.7	46	90	0	189	30	26	20	22	1.98
36787643--36787820	27	6.6	27	82	3	196	26	14	28	29	1.95
36787644--36787799	82	1.9	81	86	3	224	26	14	28	29	1.95
36787640--36787820	82	2.2	81	82	2	220	27	14	28	29	1.96
36795891--36796066	27	6.6	27	81	5	187	26	15	27	30	1.96
36795891--36796066	55	3.3	53	81	5	185	26	15	27	30	1.96
36795888--36796066	82	2.2	79	81	4	207	26	15	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36812134--36812167	18	1.9	18	88	5	52	23	20	0	55	1.43
36812125--36812191	29	2.4	28	82	9	84	13	19	0	67	1.23
36813209--36813237	10	2.7	11	94	5	51	6	3	6	82	0.93
36816658--36816692	18	1.9	18	88	11	54	22	20	0	57	1.41
36817741--36817772	12	2.5	13	95	5	57	6	3	6	84	0.86
36822076--36822114	20	2.0	20	85	10	53	38	10	10	41	1.73
36827669--36827728	27	2.2	27	100	0	120	30	0	13	56	1.37
36835849--36836163	53	6.0	52	84	4	339	31	13	23	31	1.94
36835849--36836166	79	4.0	81	85	4	391	31	13	23	31	1.93
36835848--36836158	132	2.4	132	87	2	446	31	13	23	31	1.93
36835849--36836166	27	12.0	27	80	9	352	31	13	23	31	1.93
36836328--36836398	27	2.6	27	78	8	81	45	11	22	21	1.83
36841303--36841449	50	2.9	52	83	5	201	26	15	27	30	1.96
36841361--36841442	26	3.2	26	64	27	66	25	12	26	35	1.91
36841449--36841535	45	1.9	45	88	0	129	26	16	21	35	1.94
36844108--36844197	3	30.3	3	73	6	76	63	3	5	27	1.33
36844091--36844191	15	6.9	14	75	5	69	62	3	4	28	1.34
36845568--36845677	35	3.1	35	88	2	168	43	28	10	18	1.82
36848664--36848852	51	3.7	50	83	6	247	30	26	16	25	1.97
36848666--36848850	101	1.8	101	89	3	291	30	25	17	25	1.97
36849010--36849041	16	2.0	16	93	0	55	37	15	6	40	1.73
36851342--36851386	17	2.8	16	80	12	56	57	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36854579--36854623	13	3.5	13	84	0	63	44	11	13	31	1.78
36854579--36854629	26	2.0	26	96	0	93	45	11	13	29	1.79
36854579--36854645	26	2.6	26	85	4	73	44	16	11	26	1.82
36854848--36854896	19	2.5	20	83	12	66	42	4	0	53	1.20
36854946--36855021	38	2.1	36	82	5	89	50	1	0	48	1.09
36857700--36857752	3	18.0	3	96	3	99	32	0	0	67	0.91
36858175--36858213	17	2.3	17	86	0	51	28	2	5	64	1.28
36861804--36861843	20	2.0	20	95	0	71	32	25	12	30	1.92
36869832--36870226	100	4.0	100	94	0	657	30	20	23	25	1.99
36869879--36870252	50	7.5	50	70	4	268	30	20	24	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213