Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  26  of  213  ( 25468 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6962646--6962920
147
1.9
149
95
1
500
46
3
2
47
1.35
6962976--6963028
16
3.4
17
73
21
53
56
0
0
43
0.99
6962902--6963088
60
3.1
59
66
13
157
49
6
2
41
1.42
6962854--6963148
119
2.5
120
93
2
495
50
4
2
43
1.35
6967027--6967088
27
2.4
25
79
12
72
27
3
0
69
1.04
6967896--6967929
15
2.3
15
89
0
50
26
14
0
58
1.36
6978500--6978533
15
2.3
15
89
0
50
26
14
0
58
1.36
6978953--6979008
27
2.1
28
83
12
73
58
0
3
37
1.15
6984565--6984590
7
3.7
7
100
0
52
84
0
0
15
0.62
6984770--6984810
21
1.9
21
85
14
57
48
4
4
41
1.46
6986019--6986057
20
1.9
21
89
5
62
30
0
2
66
1.05
6986019--6986061
21
2.0
21
86
8
61
30
0
2
67
1.03
6986024--6986068
20
2.2
20
84
0
54
28
2
4
64
1.25
6987414--6987440
2
13.5
2
100
0
54
48
0
0
51
1.00
6994535--6994575
21
2.0
21
90
0
64
29
21
29
19
1.98
6996258--6996288
12
2.6
12
100
0
62
35
29
19
16
1.93
7007866--7007906
21
2.0
21
81
18
50
31
19
26
21
1.97
7016981--7017012
16
1.9
17
93
6
57
46
6
9
37
1.61
7030201--7030263
29
2.2
29
83
11
76
55
1
3
39
1.25
7030287--7030344
22
2.7
21
78
19
57
60
0
0
39
0.97
7030287--7030342
23
2.5
21
77
11
58
62
0
0
37
0.95
7045953--7046018
33
2.0
33
100
0
132
27
12
9
51
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7049628--7049705
18
4.3
17
74
11
57
61
3
1
33
1.22
7049829--7049855
12
2.2
12
100
0
54
59
0
0
40
0.98
7057669--7057721
23
2.4
22
76
20
56
9
18
1
69
1.25
7066016--7066072
30
1.9
30
88
0
87
17
31
33
17
1.93
7067773--7067809
19
1.9
19
88
0
56
40
5
0
54
1.24
7069740--7069785
3
15.3
3
86
8
67
32
4
0
63
1.14
7073920--7073986
34
2.0
33
88
2
98
73
7
11
7
1.26
7073992--7074034
6
7.3
6
80
15
54
79
0
20
0
0.74
7073921--7074034
18
6.3
17
69
19
63
75
4
14
5
1.14
7073992--7074036
18
2.6
17
86
13
65
77
0
22
0
0.76
7076126--7077354
50
24.7
50
69
5
655
32
25
20
21
1.97
7076116--7077350
399
3.1
398
84
2
1604
32
24
20
22
1.97
7076116--7077354
100
12.5
100
86
1
1533
32
25
20
22
1.97
7079005--7079076
3
23.3
3
78
10
74
29
5
1
63
1.25
7079008--7079076
16
4.4
16
82
10
65
28
5
1
63
1.26
7079003--7079056
19
2.8
19
91
5
83
27
3
0
68
1.06
7079002--7079076
19
4.1
17
83
13
80
29
5
1
64
1.24
7080231--7080256
4
6.5
4
100
0
52
23
0
0
76
0.78
7081785--7081830
16
2.9
16
75
15
51
56
0
8
34
1.30
7081987--7082014
3
9.3
3
100
0
56
64
0
0
35
0.94
7089419--7089495
30
2.6
29
81
6
75
19
28
32
19
1.96
7091154--7091189
19
1.9
19
88
5
56
55
11
8
25
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7091780--7091838
3
20.0
3
72
10
50
66
3
1
28
1.18
7093310--7093416
44
2.4
44
76
6
108
28
24
15
30
1.96
7093355--7093478
59
2.1
59
93
1
214
24
25
16
33
1.96
7093412--7093592
45
4.1
44
72
2
146
28
25
17
28
1.98
7093418--7093592
89
2.0
89
93
0
296
28
25
17
28
1.97
7093418--7093549
44
3.0
45
71
2
131
28
27
17
27
1.98
7093412--7093569
45
3.5
45
73
1
156
25
25
17
31
1.97
7093453--7093603
44
3.4
44
73
1
131
28
23
17
31
1.97
7097824--7097908
9
9.4
9
80
5
100
41
23
8
27
1.83
7097824--7097908
18
4.7
18
85
5
118
41
23
8
27
1.83
7097824--7097908
27
3.1
27
84
0
116
41
23
8
27
1.83
7098010--7098076
18
3.9
18
70
20
63
16
1
41
40
1.57
7098016--7098050
13
2.7
13
95
0
61
14
0
45
40
1.45
7102396--7102435
20
2.0
20
95
0
71
32
15
22
30
1.94
7105820--7105856
19
1.9
19
88
0
56
56
10
8
24
1.60
7106447--7106505
3
20.0
3
72
10
50
66
3
1
28
1.18
7109962--7110227
103
2.6
104
91
0
426
19
20
30
29
1.97
7117462--7117714
103
2.4
104
92
0
418
19
21
29
29
1.98
7119046--7119075
13
2.2
14
94
5
53
43
0
6
50
1.28
7119712--7119747
17
2.1
17
94
0
63
22
25
5
47
1.73
7121374--7121419
21
2.2
21
84
3
58
56
2
2
39
1.24
7121382--7121429
21
2.3
21
85
0
60
64
4
0
31
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7121512--7121556
21
2.1
21
84
8
56
51
2
2
44
1.26
7125307--7125345
19
2.1
19
95
0
69
35
10
0
53
1.35
7134490--7134516
6
4.5
6
100
0
54
48
0
51
0
1.00
7135405--7135452
23
2.1
23
100
0
96
33
20
18
27
1.96
7147887--7147926
21
2.0
20
85
5
53
42
5
20
32
1.73
7149485--7149546
24
2.6
24
82
10
81
14
27
24
33
1.94
7154064--7154140
33
2.4
31
77
10
82
33
5
1
59
1.28
7154086--7154174
29
3.0
29
74
9
81
34
5
1
58
1.29
7154463--7154506
4
10.8
4
97
2
79
22
0
2
75
0.92
7154547--7154580
15
2.3
15
89
0
50
17
11
5
64
1.45
7162927--7162970
21
2.1
21
100
0
88
34
13
27
25
1.93
7164837--7164890
20
2.7
19
74
5
54
25
0
0
74
0.83
7169022--7169229
51
4.0
53
94
2
361
28
23
19
28
1.98
7169022--7169229
104
2.0
104
93
3
357
28
23
19
28
1.98
7171552--7171802
127
2.0
126
90
0
394
39
18
11
30
1.86
7173772--7173799
14
2.0
14
100
0
56
50
7
7
35
1.57
7174433--7174462
3
10.0
3
100
0
60
33
0
33
33
1.58
7174461--7174498
3
12.7
3
100
0
76
34
31
34
0
1.58
7174508--7174536
3
9.7
3
100
0
58
65
0
0
34
0.93
7181436--7182124
87
7.9
87
90
1
1035
36
19
16
27
1.93
7181437--7182124
346
2.0
348
90
1
1096
36
19
16
27
1.93
7183487--7183540
16
3.4
16
81
0
63
48
3
18
29
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7183976--7184010
13
2.8
12
83
8
52
57
0
11
31
1.34
7185975--7186039
28
2.3
30
76
15
84
60
1
29
9
1.37
7189798--7189870
18
4.1
18
83
0
83
31
23
12
32
1.91
7189792--7189866
36
2.1
36
92
0
123
29
25
13
32
1.93
7195769--7195839
34
2.1
34
91
0
115
39
23
11
25
1.88
7197336--7197381
24
1.9
24
81
0
56
30
10
15
43
1.81
7199762--7199831
28
2.5
28
93
2
115
40
10
1
48
1.45
7200217--7200251
3
11.7
3
100
0
70
34
0
0
65
0.93
7200977--7201021
18
2.5
18
85
0
63
28
4
46
20
1.69
7203336--7203374
14
2.7
15
84
8
53
61
5
5
28
1.39
7203348--7203376
14
2.1
14
100
0
58
55
0
6
37
1.27
7205655--7205682
11
2.5
11
100
0
56
7
7
0
85
0.73
7205701--7205768
27
2.5
28
95
4
122
48
0
10
41
1.37
7205772--7205797
13
2.0
13
100
0
52
23
0
0
76
0.78
7205806--7205841
19
1.9
18
88
5
54
72
5
2
19
1.17
7206411--7206445
16
2.1
18
89
10
56
54
8
0
37
1.31
7206552--7206703
22
7.4
22
69
18
57
0
31
0
67
0.95
7206566--7206682
10
11.9
10
70
16
75
0
30
0
68
0.96
7206557--7206699
18
7.7
18
72
16
89
0
30
0
68
0.95
7206582--7206690
38
2.9
38
91
0
164
0
33
0
66
0.99
7206620--7206699
34
2.8
28
73
24
76
0
31
0
68
0.90
7206572--7206702
33
4.2
31
72
18
85
0
32
0
67
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7206555--7206702
10
15.1
10
63
24
57
0
30
0
68
0.94
7206751--7206827
27
2.9
27
88
0
109
16
31
25
25
1.97
7206857--7206927
29
2.5
28
88
8
101
49
1
9
39
1.45
7208445--7208479
7
5.1
7
96
3
63
57
14
0
28
1.38
7208445--7208487
21
2.1
20
82
4
50
60
11
2
25
1.43
7208606--7208636
16
1.9
16
93
0
53
29
9
22
38
1.86
7210113--7210457
87
4.0
87
87
0
485
36
17
16
29
1.91
7215504--7215544
21
2.0
21
90
0
64
21
26
19
31
1.97
7222635--7222665
15
2.1
15
93
0
53
38
0
0
61
0.96
7223749--7224404
170
3.9
170
87
2
897
35
17
7
39
1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213