genome.fa.s14.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  110  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31160389--31160569	79	2.3	80	82	7	208	25	23	27	23	2.00
31160442--31160606	79	2.1	79	82	6	192	27	21	26	24	1.99
31168377--31168480	39	2.6	40	90	4	158	27	20	25	25	1.99
31168377--31168508	40	3.3	40	87	7	155	28	21	25	25	1.99
31174901--31174965	32	2.1	32	97	2	123	47	12	9	30	1.72
31177765--31177820	17	3.3	17	97	0	103	30	32	0	37	1.58
31178391--31178429	20	1.9	21	89	5	62	53	17	0	28	1.44
31180624--31180724	27	3.7	27	81	5	96	35	19	11	32	1.89
31180632--31180734	54	1.9	54	83	0	134	37	18	10	33	1.85
31180631--31180735	27	3.9	27	78	5	95	38	19	10	32	1.85
31180721--31180773	27	2.0	27	85	7	72	37	18	15	28	1.91
31181162--31181253	28	3.3	28	87	1	123	15	22	23	38	1.92
31189270--31189365	25	3.8	25	92	2	147	26	23	26	23	2.00
31199162--31199206	18	2.5	18	77	0	54	42	8	8	40	1.67
31203200--31203226	3	9.0	3	100	0	54	66	0	33	0	0.92
31211069--31211111	19	2.2	20	84	12	63	32	18	0	48	1.48
31213381--31213418	20	1.9	20	94	0	67	23	2	5	68	1.23
31226876--31226958	27	3.1	28	81	6	82	28	24	18	28	1.98
31252436--31252485	18	2.8	18	84	6	57	44	16	6	34	1.72
31264022--31264246	40	5.7	40	86	5	287	24	22	27	25	2.00
31264022--31264251	79	2.9	79	83	6	227	25	22	27	24	2.00
31264022--31264251	119	1.9	118	81	6	268	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31271491--31271715	40	5.7	40	81	10	239	24	21	27	26	1.99
31271491--31271715	79	2.8	79	79	10	253	24	21	27	26	1.99
31279011--31279084	3	24.7	3	100	0	148	32	0	0	67	0.91
31279889--31279944	22	2.5	23	76	2	60	16	7	1	75	1.11
31280698--31280753	25	2.3	25	84	9	71	57	5	16	21	1.59
31284422--31284474	24	2.3	23	78	15	56	56	3	15	24	1.55
31285947--31286147	44	4.7	43	74	9	176	27	22	20	29	1.99
31285947--31286187	129	1.9	129	83	1	313	27	21	20	30	1.98
31286158--31286314	50	3.1	48	75	8	145	28	19	19	32	1.96
31288512--31288571	5	12.0	5	100	0	120	40	0	0	60	0.97
31294612--31294735	59	2.1	59	98	0	239	62	10	4	22	1.46
31299228--31299453	40	5.7	40	87	4	262	26	26	21	25	1.99
31307215--31307446	40	5.8	40	89	3	276	25	27	21	26	1.99
31314562--31314614	9	6.1	9	76	22	51	45	0	0	54	0.99
31314624--31314703	32	2.6	32	75	13	89	33	0	2	63	1.08
31318827--31318866	21	2.0	20	85	5	53	12	5	40	42	1.64
31319447--31319558	44	2.5	45	82	4	138	29	19	19	31	1.97
31319591--31319981	50	7.8	50	67	4	223	25	24	21	28	1.99
31319565--31319976	100	4.1	100	90	1	587	25	23	21	29	1.99
31324196--31324242	15	3.4	14	82	11	53	17	12	0	70	1.17
31324734--31324821	1	88.0	1	67	0	50	4	4	6	84	0.88
31324734--31324819	10	9.6	9	74	13	63	4	4	6	83	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31324734--31324818	13	6.4	13	75	14	59	4	4	7	83	0.90
31330480--31330833	47	7.6	47	94	3	628	31	9	29	29	1.88
31330954--31331032	37	2.1	37	88	4	115	25	18	30	25	1.98
31333091--31333146	16	3.4	16	80	9	60	71	1	1	25	1.05
31333141--31333198	27	2.1	27	81	6	64	53	1	6	37	1.38
31333303--31333378	27	2.7	29	76	8	75	51	5	7	35	1.54
31334356--31334395	21	2.0	20	85	5	53	12	5	40	42	1.64
31334629--31334658	15	1.9	16	93	6	53	30	3	0	66	1.07
31334858--31335041	91	2.0	91	100	0	368	33	8	5	52	1.55
31338541--31338587	14	3.4	14	72	21	53	42	0	0	57	0.98
31341300--31341677	40	9.5	39	87	5	391	25	19	27	27	1.99
31341293--31341675	80	4.8	80	87	2	504	25	20	27	26	1.99
31341293--31341675	120	3.2	120	91	1	565	25	20	27	26	1.99
31345099--31345160	27	2.3	28	83	5	83	24	38	20	16	1.92
31349464--31349501	19	2.1	18	90	5	58	65	0	18	15	1.27
31351719--31351743	12	2.1	12	100	0	50	8	0	16	76	1.02
31362619--31362696	31	2.5	31	83	8	79	51	12	6	29	1.65
31362640--31362701	31	2.0	31	90	6	99	46	9	8	35	1.66
31364212--31364255	20	2.2	19	88	8	61	50	4	0	45	1.22
31365462--31365511	20	2.6	19	84	6	57	42	2	8	48	1.44
31382233--31382792	279	2.0	279	86	5	790	36	15	11	36	1.83
31383414--31383502	24	3.7	24	75	3	72	28	15	10	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31385630--31385665	7	5.0	7	96	3	63	44	0	0	55	0.99
31388032--31388540	47	10.7	47	96	2	883	31	8	29	30	1.88
31388658--31388736	37	2.1	37	88	0	113	25	18	30	25	1.98
31390591--31390693	43	2.4	43	96	0	188	23	15	35	25	1.94
31390675--31390748	29	2.6	29	89	4	105	25	16	32	25	1.96
31391059--31391373	40	7.9	40	81	3	298	24	21	27	26	1.99
31391059--31391358	80	3.8	80	84	3	338	24	22	28	25	1.99
31394910--31394990	22	3.5	23	66	11	67	30	9	28	30	1.89
31394778--31395240	47	9.7	47	98	1	793	31	8	29	30	1.87
31395358--31395436	37	2.1	37	88	0	113	24	17	32	25	1.97
31397096--31397133	17	2.2	18	85	4	51	73	0	5	21	1.02
31406868--31406934	34	2.0	34	84	0	89	34	20	20	23	1.97
31407393--31407430	20	1.9	20	94	0	67	34	28	10	26	1.90
31411926--31413155	617	2.0	617	94	0	2147	30	23	16	29	1.96
31414726--31414775	19	2.6	20	73	20	61	48	0	4	48	1.20
31421829--31421882	27	2.1	26	93	6	92	46	24	22	7	1.77
31433483--31433607	60	2.1	60	100	0	250	37	14	17	30	1.90
31453473--31453693	40	5.6	40	85	3	232	24	21	28	25	1.99
31453548--31453730	79	2.3	80	81	3	210	25	20	27	25	1.99
31458754--31458795	6	6.8	6	91	2	57	57	0	26	16	1.40
31474720--31474751	12	2.7	12	95	0	55	21	9	15	53	1.70
31474720--31474784	30	2.2	30	82	0	76	26	9	13	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31487106--31487188	42	2.0	42	92	0	139	39	6	19	34	1.76
31491117--31491164	3	16.0	3	95	0	87	35	0	0	64	0.94
31494800--31494834	9	3.9	9	92	0	61	77	0	22	0	0.78
31494796--31494828	15	2.2	15	94	0	57	75	0	24	0	0.80
31497466--31497643	27	6.6	27	83	3	205	26	15	28	29	1.96
31497467--31497622	82	1.9	81	88	3	233	26	15	28	29	1.96
31497463--31497643	82	2.2	81	83	2	229	27	15	27	29	1.96
31515592--31515657	34	1.9	34	87	6	98	24	18	21	36	1.95
31515597--31515678	34	2.4	35	80	13	91	24	21	21	31	1.98
31519030--31519440	47	8.6	47	89	4	624	31	9	30	28	1.88
31519145--31519220	22	3.3	22	64	10	62	28	11	30	28	1.92
31519030--31519429	145	2.8	145	90	3	628	31	9	30	29	1.88
31519030--31519440	192	2.1	192	93	0	714	31	9	30	28	1.88
31519559--31519637	37	2.1	37	88	4	115	25	18	30	25	1.98
31521503--31521605	43	2.4	43	100	0	206	22	15	35	26	1.94
31521590--31521660	29	2.4	29	86	4	90	28	16	29	25	1.97
31521973--31522155	40	4.6	40	83	5	185	24	22	26	25	2.00
31525576--31525935	47	7.6	47	91	3	569	31	8	30	28	1.87
31526054--31526132	37	2.1	37	88	4	115	25	18	30	25	1.98
31527893--31527937	19	2.3	20	75	17	51	17	51	0	31	1.46
31530261--31530409	42	3.6	41	80	7	165	34	25	16	22	1.95
31530346--31530476	67	1.9	68	87	4	194	29	28	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31530414--31530556	41	3.5	41	93	0	250	23	25	20	30	1.98
31531519--31531550	13	2.6	13	90	9	50	43	15	3	37	1.63
31542947--31543172	27	8.5	27	84	2	262	19	19	19	42	1.90
31542947--31543172	107	2.1	105	83	6	278	19	19	19	42	1.90
31548188--31548237	21	2.4	21	90	3	75	56	8	12	24	1.62
31558849--31559025	27	6.5	26	81	6	167	25	16	28	28	1.97
31558849--31559004	82	1.9	81	86	3	224	26	16	28	28	1.97
31558930--31559036	27	3.9	27	81	1	70	25	16	28	28	1.97
31579335--31579384	21	2.4	21	90	3	75	56	8	12	24	1.62
31589971--31590147	27	6.5	26	81	6	167	25	16	28	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213