genome.fa.s14.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  113  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32271697--32271952	33	7.6	33	68	24	151	34	28	16	19	1.94
32271652--32272049	102	4.0	102	92	3	641	33	28	16	20	1.95
32271653--32272049	203	2.0	197	91	3	634	33	28	16	20	1.95
32272073--32272217	51	2.8	51	83	8	204	31	28	17	22	1.96
32274796--32274865	33	2.1	35	86	10	101	62	2	0	34	1.10
32279925--32280187	40	6.6	40	87	3	325	25	20	28	26	1.99
32297398--32297573	46	3.8	46	75	14	191	31	27	18	22	1.97
32297406--32297576	93	1.8	93	92	2	290	30	28	19	22	1.98
32304626--32304734	42	2.6	42	82	7	141	30	23	20	25	1.98
32307845--32307981	46	3.0	46	89	0	202	25	31	8	34	1.86
32307909--32308103	46	4.1	47	81	8	196	27	29	8	34	1.87
32307909--32308103	51	4.1	49	82	10	192	27	29	8	34	1.87
32307960--32308103	52	2.9	48	84	8	191	28	29	9	33	1.88
32308024--32308104	25	3.2	25	65	16	60	32	27	6	34	1.81
32322268--32322491	39	5.7	40	84	8	264	25	22	27	24	2.00
32322269--32322491	40	5.6	40	82	9	244	25	22	27	24	2.00
32322321--32322524	79	2.6	79	82	5	209	26	22	26	24	1.99
32325683--32325845	40	4.1	40	92	1	265	22	23	28	25	1.99
32333735--32333909	40	4.4	40	89	2	255	24	22	27	25	2.00
32335719--32335928	40	5.3	40	92	0	314	24	20	28	26	1.99
32335666--32335928	80	3.3	80	85	2	316	25	20	27	26	1.99
32335666--32335928	120	2.2	120	83	3	325	25	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32335719--32335963	80	3.1	80	85	2	253	25	20	28	25	1.99
32343296--32343558	40	6.6	40	87	3	325	25	20	28	26	1.99
32344946--32345037	26	3.3	26	72	21	96	25	10	31	32	1.90
32344941--32345068	58	2.2	57	90	1	202	26	10	29	32	1.90
32345086--32345152	31	2.2	31	83	0	80	23	17	29	28	1.97
32345093--32345158	31	2.1	31	85	0	87	22	15	33	28	1.94
32350405--32350573	85	2.0	85	94	2	295	20	24	20	34	1.96
32353774--32353812	16	2.2	17	86	13	53	69	0	17	12	1.19
32357373--32357398	4	6.5	4	100	0	52	50	0	0	50	1.00
32357798--32357848	23	2.2	23	89	0	75	27	7	21	43	1.80
32373672--32373713	7	6.1	7	97	2	77	0	26	0	73	0.83
32373918--32373951	15	2.4	14	90	5	50	0	29	0	70	0.87
32380877--32380915	20	2.0	20	100	0	78	20	5	30	43	1.73
32392699--32392761	31	2.0	31	84	6	83	46	6	7	39	1.59
32397414--32397529	41	2.9	41	89	3	173	24	20	25	30	1.99
32407724--32407779	20	2.8	20	84	15	71	1	23	0	75	0.90
32408324--32408448	63	2.0	63	87	0	178	32	21	21	24	1.98
32410085--32410167	43	1.9	43	92	4	141	33	7	16	42	1.76
32413538--32413702	40	4.1	40	80	6	174	25	27	22	24	2.00
32421875--32422003	40	3.3	38	89	8	190	25	28	21	24	1.99
32421875--32422055	76	2.3	80	83	8	221	25	28	22	24	1.99
32429904--32430084	77	2.3	81	83	7	230	24	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32429883--32430084	40	5.1	40	81	10	229	24	27	22	24	2.00
32437855--32438038	78	2.3	80	87	5	250	25	27	22	23	2.00
32437836--32438038	40	5.1	40	85	7	254	25	27	22	24	2.00
32446128--32446260	40	3.3	40	92	2	214	27	27	20	24	1.99
32446128--32446311	80	2.3	80	83	7	223	26	27	21	25	2.00
32451475--32451561	42	2.1	41	87	8	122	24	21	28	25	1.99
32453190--32453317	54	2.4	55	78	6	145	23	27	26	22	2.00
32454219--32454313	37	2.6	37	86	5	131	42	30	10	16	1.82
32458862--32459247	40	9.7	40	89	1	580	31	20	26	21	1.98
32458862--32459247	119	3.2	120	90	1	589	31	20	26	21	1.98
32473717--32473755	17	2.4	17	87	8	55	7	28	5	58	1.47
32480053--32480137	16	5.2	16	74	23	70	56	2	31	9	1.44
32480053--32480130	17	4.8	15	74	25	61	57	2	29	10	1.45
32480053--32480169	33	3.6	33	86	3	139	53	5	32	8	1.53
32483494--32483626	69	1.9	70	89	1	205	32	15	16	36	1.90
32485015--32485271	47	5.5	47	91	0	401	32	8	30	28	1.88
32486689--32486957	40	6.7	40	91	0	412	23	20	28	26	1.99
32489555--32489687	69	1.9	70	89	1	205	32	13	16	37	1.88
32491298--32491355	25	2.3	25	96	0	107	36	3	31	29	1.74
32491074--32491322	47	5.3	47	92	0	394	32	8	29	28	1.87
32504740--32504765	12	2.2	12	100	0	52	46	23	7	23	1.78
32507959--32507987	13	2.2	13	100	0	58	10	6	27	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32542180--32542367	40	4.7	40	95	0	313	30	20	26	22	1.98
32551907--32551931	12	2.1	12	100	0	50	92	8	0	0	0.40
32551909--32551939	13	2.4	13	94	0	53	93	3	3	0	0.41
32561909--32562032	50	2.5	50	80	5	135	26	24	28	20	1.99
32563314--32563593	139	2.0	139	95	0	506	32	21	14	31	1.93
32568322--32568367	22	2.1	22	100	0	92	21	17	13	47	1.81
32570924--32571049	20	6.3	19	72	9	99	15	30	18	34	1.92
32570901--32570998	40	2.5	40	89	3	144	18	30	16	34	1.93
32570924--32571049	40	3.2	40	83	0	153	15	30	18	34	1.92
32575886--32575910	13	1.9	13	100	0	50	48	0	20	32	1.50
32576281--32576612	50	6.6	50	86	1	450	27	21	30	21	1.98
32576376--32576651	50	5.6	48	82	6	150	29	21	27	22	1.99
32578324--32578390	30	2.2	31	84	5	84	50	4	17	26	1.65
32585535--32585790	130	2.0	130	88	1	379	35	26	10	27	1.89
32587892--32587934	21	2.1	20	83	12	52	37	0	2	60	1.10
32589051--32589095	18	2.5	18	85	7	56	33	2	6	57	1.37
32591013--32591197	79	2.3	82	83	7	229	24	27	22	24	2.00
32590994--32591197	40	5.1	40	81	8	229	24	27	22	25	2.00
32609394--32609466	32	2.3	32	83	4	85	27	34	15	23	1.94
32613340--32613614	27	10.2	27	83	3	304	45	18	13	22	1.85
32613340--32613614	107	2.6	107	88	3	383	45	18	13	22	1.85
32613340--32613614	81	3.4	80	87	1	379	45	18	13	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32616130--32616323	50	3.9	50	80	2	185	26	20	29	23	1.99
32616129--32616316	100	1.9	99	83	1	241	27	20	29	23	1.99
32616525--32616563	12	3.2	12	85	0	51	56	5	20	17	1.60
32618356--32618486	50	2.6	52	82	6	178	33	14	12	38	1.84
32618857--32618904	24	2.0	25	83	4	62	68	0	12	18	1.20
32620496--32620764	33	8.3	33	72	12	198	43	19	7	29	1.78
32620551--32620724	31	5.5	31	70	15	122	44	18	9	27	1.81
32620518--32620805	64	4.4	64	88	3	371	45	18	7	28	1.77
32621134--32621321	76	2.4	77	83	1	225	41	16	4	37	1.68
32625253--32625279	7	3.9	7	100	0	54	14	0	44	40	1.46
32627751--32627791	21	2.0	21	95	0	73	7	19	29	43	1.78
32630717--32630744	14	2.0	14	100	0	56	35	7	0	57	1.26
32639834--32639890	27	2.2	26	84	9	71	77	7	8	7	1.13
32639831--32639894	33	1.9	34	87	9	96	76	7	7	7	1.16
32640805--32640842	7	5.4	7	81	12	51	71	0	15	13	1.16
32642428--32643399	100	9.8	100	90	1	1465	33	23	19	23	1.97
32642428--32643399	199	4.9	199	91	1	1531	33	23	19	23	1.97
32642428--32643383	50	19.2	50	67	10	386	33	23	19	23	1.97
32646438--32646645	40	5.2	40	91	0	238	23	20	29	26	1.99
32646385--32646645	80	3.3	80	82	2	276	23	20	29	26	1.99
32654366--32654573	40	5.2	40	91	0	247	23	21	29	25	1.99
32654313--32654573	80	3.3	80	82	2	285	23	21	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32654366--32654610	80	3.1	80	81	4	203	24	20	29	25	1.99
32661020--32661121	41	2.5	41	87	3	134	28	18	25	27	1.98
32666743--32666916	28	6.2	28	87	2	260	29	23	24	22	1.99
32667024--32667084	26	2.3	26	82	0	77	36	21	19	22	1.95
32667332--32667894	27	20.9	26	81	5	586	19	16	20	43	1.87
32667331--32667962	27	23.4	27	78	8	491	19	15	20	44	1.87
32670973--32671235	40	6.6	40	88	3	325	26	27	20	24	1.99
32683039--32683427	40	9.7	40	90	0	598	31	20	26	21	1.98
32685250--32685280	12	2.6	12	94	0	53	32	38	29	0	1.57
32685819--32685843	6	4.2	6	100	0	50	84	0	0	16	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213