genome.fa.s14.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  163  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48837183--48837221	15	2.6	15	79	0	51	61	2	2	33	1.23
48841900--48841930	3	10.3	3	100	0	62	67	0	32	0	0.91
48855391--48855417	5	5.4	5	100	0	54	40	0	0	59	0.98
48855754--48855817	29	2.2	30	81	13	71	67	3	6	23	1.28
48864282--48864480	43	4.7	43	80	0	211	28	18	14	39	1.89
48864308--48864505	86	2.3	86	84	4	256	28	18	15	37	1.91
48874086--48874262	94	1.9	94	82	2	221	24	17	31	27	1.97
48876464--48877143	137	5.0	137	78	3	638	30	26	18	24	1.98
48876450--48877143	274	2.6	269	81	4	784	30	26	18	24	1.98
48879833--48879893	13	4.6	13	83	8	61	29	0	0	70	0.88
48879857--48879898	14	3.0	14	80	10	50	28	0	0	71	0.86
48879857--48879911	29	1.9	29	85	3	76	29	0	1	69	0.99
48880562--48880612	23	2.1	26	82	10	63	31	5	5	56	1.47
48896409--48896462	19	2.8	19	100	0	108	37	11	16	35	1.84
48896409--48896485	19	3.7	22	89	6	85	36	9	16	37	1.81
48897016--48897092	37	2.1	37	80	11	86	37	9	1	51	1.42
48897186--48897228	23	1.9	22	90	4	68	37	6	2	53	1.41
48897166--48897225	28	2.3	27	85	8	79	33	8	1	56	1.39
48897426--48897454	3	9.7	3	100	0	58	0	0	31	68	0.89
48902997--48903088	20	4.3	22	68	20	70	40	0	2	57	1.11
48905957--48905985	14	2.0	15	93	6	51	55	0	44	0	0.99
48906255--48906291	3	12.3	3	100	0	74	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48922280--48922335	29	2.0	29	83	16	75	44	23	0	32	1.53
48922761--48922790	12	2.5	12	94	0	51	40	0	0	60	0.97
48929619--48929655	13	2.7	14	83	8	58	70	2	0	27	1.01
48935221--48935254	9	3.8	9	88	0	50	70	8	0	20	1.13
48940022--48940092	37	1.9	37	91	0	115	38	1	19	40	1.61
48941223--48941280	27	2.2	27	78	3	64	27	0	24	48	1.51
48942403--48942444	13	3.2	13	82	0	57	30	16	21	30	1.95
48942403--48942451	13	3.8	13	80	0	53	30	16	20	32	1.94
48943228--48943319	40	2.3	40	84	3	114	22	27	11	38	1.89
48946467--48946513	13	3.6	13	85	0	67	21	12	27	38	1.90
48950061--48950119	31	1.9	31	96	0	109	55	28	3	11	1.52
48951829--48951880	23	2.3	22	84	15	63	38	1	0	59	1.08
48952619--48952688	35	2.0	35	83	10	90	44	1	2	51	1.25
48955885--48955926	16	2.7	16	85	3	59	66	0	0	33	0.92
48958409--48958486	27	2.9	27	80	3	86	20	23	32	24	1.98
48960819--48960857	16	2.5	16	87	4	53	0	12	7	79	0.93
48961283--48961324	20	2.0	22	90	9	70	76	2	21	0	0.90
48966438--48966528	30	3.0	29	88	7	128	32	2	45	19	1.63
48967806--48967888	21	4.0	21	95	4	150	57	13	0	28	1.36
48967806--48967888	41	2.0	41	95	2	148	57	13	0	28	1.36
48968151--48968189	19	2.1	19	95	0	69	0	46	10	43	1.37
48971313--48971354	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48971304--48971345	15	2.9	15	82	10	52	47	0	0	52	1.00
48971481--48971590	45	2.6	44	78	8	122	31	28	5	34	1.80
48971571--48971622	16	3.2	16	94	0	86	34	36	0	28	1.58
48971791--48971825	3	12.3	3	88	11	56	0	34	0	65	0.93
48971787--48971835	8	6.2	8	86	9	66	0	34	0	65	0.93
48971954--48972014	27	2.3	27	91	0	95	16	34	21	27	1.95
48972070--48972123	22	2.5	21	79	8	54	51	0	0	48	1.00
48972086--48972126	21	2.0	21	90	9	66	53	0	0	46	1.00
48973891--48973921	9	3.4	9	95	0	53	25	9	25	38	1.86
48974433--48974492	2	29.5	2	96	3	111	0	48	1	50	1.11
48977890--48978009	25	4.9	25	67	7	84	32	21	25	20	1.97
48978086--48978150	26	2.5	26	79	2	67	41	20	18	20	1.91
48978227--48978288	24	2.5	25	84	7	74	38	20	27	12	1.90
48987448--48987493	19	2.4	19	85	0	65	26	8	21	43	1.81
48994002--48994035	16	2.1	16	100	0	68	44	0	26	29	1.55
48995690--48995912	40	5.6	40	87	3	254	25	20	27	26	1.99
48995764--48995947	79	2.3	80	82	3	221	26	20	27	25	1.99
49014482--49014543	22	2.8	21	70	4	52	45	17	19	17	1.86
49014535--49014641	32	3.4	32	75	6	110	39	19	19	21	1.93
49014760--49014861	24	4.2	24	78	5	98	48	24	5	21	1.72
49014775--49014869	48	2.0	48	85	4	129	47	24	5	23	1.72
49014888--49015114	27	8.4	27	77	2	161	23	19	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49014885--49015114	81	2.9	81	79	4	198	23	19	20	36	1.95
49015052--49015410	27	13.3	27	78	2	319	23	16	20	39	1.91
49015052--49015410	54	6.6	54	83	4	368	23	16	20	39	1.91
49015612--49015645	17	1.9	18	94	5	61	23	47	23	5	1.73
49018019--49018044	13	2.0	13	100	0	52	46	0	7	46	1.31
49018484--49018539	28	1.9	29	82	7	69	75	1	7	16	1.11
49023017--49023707	357	1.9	357	84	2	931	31	16	20	31	1.95
49037988--49038179	94	2.0	94	98	0	375	27	28	14	29	1.95
49041618--49041642	12	2.1	12	100	0	50	20	32	0	48	1.50
49043087--49043144	22	2.6	23	72	10	57	31	27	18	22	1.97
49046795--49046957	87	1.9	86	85	1	227	28	13	20	36	1.91
49048635--49048679	11	3.5	13	79	14	58	31	0	0	68	0.89
49055587--49055644	19	3.1	20	73	11	61	32	6	18	41	1.78
49057685--49057820	71	1.9	71	90	0	218	36	27	7	29	1.84
49065573--49065627	18	3.1	18	81	0	65	36	30	21	10	1.88
49068427--49068490	33	1.9	34	87	9	96	37	18	0	43	1.51
49070080--49070225	43	3.4	43	81	5	161	30	23	16	29	1.96
49077362--49077519	85	1.9	85	81	2	192	30	22	16	31	1.96
49077916--49077958	9	4.7	9	97	2	77	65	23	0	11	1.25
49082758--49082791	17	2.0	17	88	0	50	20	0	5	73	1.04
49085625--49085650	8	3.2	8	100	0	52	76	0	0	23	0.78
49087405--49087433	13	2.1	14	93	6	51	20	0	3	75	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49094724--49094790	32	2.1	32	94	0	116	31	0	14	53	1.42
49096376--49096445	34	2.1	34	88	0	104	18	15	32	32	1.93
49124320--49124359	18	2.2	18	86	0	53	35	20	2	42	1.65
49130836--49130873	13	2.9	13	84	11	51	28	0	10	60	1.30
49130836--49130873	12	2.8	13	84	15	51	28	0	10	60	1.30
49134472--49134569	45	2.2	46	81	7	112	28	19	9	42	1.82
49135168--49135203	17	2.1	17	100	0	72	36	5	0	58	1.22
49137519--49137659	50	2.8	50	84	0	183	26	21	30	21	1.98
49141841--49141929	42	2.1	42	93	0	151	34	26	14	23	1.94
49146392--49146450	31	1.9	31	85	0	82	33	13	11	40	1.81
49149628--49149658	14	2.2	14	100	0	62	19	6	29	45	1.75
49150447--49150652	91	2.3	89	85	4	261	45	4	3	46	1.41
49150682--49150713	16	1.9	17	93	6	57	53	0	0	46	1.00
49150706--49150918	61	3.4	63	69	17	194	41	2	6	49	1.41
49150668--49150959	120	2.4	119	90	3	471	42	2	5	50	1.36
49150789--49150823	18	2.0	17	88	5	52	40	0	0	60	0.97
49150909--49150942	17	2.0	17	88	0	50	47	0	0	52	1.00
49150897--49151170	147	1.9	149	94	2	491	47	2	3	45	1.35
49151055--49151089	18	2.0	17	88	5	52	45	0	0	54	0.99
49151251--49151345	45	2.1	44	86	9	131	32	26	6	34	1.82
49151326--49151377	16	3.2	16	94	0	86	34	36	0	28	1.58
49151759--49151801	21	2.1	20	86	4	59	34	16	0	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49161130--49161163	16	2.1	16	100	0	68	32	5	8	52	1.56
49163507--49163741	128	1.8	128	91	1	391	34	11	16	37	1.85
49168988--49169170	101	1.8	101	88	5	280	21	15	30	32	1.95
49168988--49169176	51	3.8	49	81	4	200	22	15	30	31	1.95
49177176--49177355	28	6.6	27	94	2	288	30	28	13	26	1.94
49177176--49177355	55	3.3	54	92	3	288	30	28	13	26	1.94
49177176--49177355	83	2.2	82	92	1	297	30	28	13	26	1.94
49185066--49185245	28	6.6	27	94	2	288	30	28	13	26	1.94
49185066--49185245	55	3.3	54	92	3	288	30	28	13	26	1.94
49185066--49185245	83	2.2	82	92	1	297	30	28	13	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213