genome.fa.s14.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  164  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49198134--49198206	26	2.8	25	83	6	92	43	6	15	34	1.73
49211383--49211445	11	5.8	10	75	15	54	41	46	3	9	1.52
49211382--49211435	22	2.5	22	84	0	72	42	42	3	11	1.58
49216431--49216565	37	3.7	37	90	3	193	37	32	14	16	1.88
49223782--49223819	9	4.2	9	89	0	58	44	15	10	28	1.80
49224032--49224089	30	1.9	30	82	0	71	20	34	0	44	1.52
49238869--49238929	30	2.1	29	84	3	77	16	3	13	67	1.36
49243761--49243805	22	2.0	22	86	0	63	75	0	22	2	0.91
49244707--49244739	7	4.7	7	92	0	57	84	0	15	0	0.61
49244704--49244740	14	2.8	14	92	8	60	83	0	16	0	0.64
49245926--49247539	44	35.8	44	68	14	423	31	17	21	28	1.97
49245924--49247362	44	31.9	43	70	14	520	31	17	22	28	1.97
49245926--49246229	134	2.3	133	79	6	337	31	17	23	28	1.96
49246146--49246391	134	1.8	134	85	1	350	30	19	22	27	1.98
49245924--49246900	178	5.4	180	77	8	682	31	17	22	28	1.96
49246818--49247274	184	2.5	182	85	3	596	30	19	21	28	1.98
49246965--49247366	89	4.5	90	74	11	329	29	18	22	28	1.98
49246818--49247274	183	2.5	180	83	6	553	30	19	21	28	1.98
49247424--49247557	42	3.1	44	73	7	94	29	18	23	29	1.98
49248108--49248134	14	1.9	14	100	0	54	0	25	0	74	0.83
49248894--49248936	12	3.6	11	82	14	50	27	4	0	67	1.10
49253591--49253676	43	2.0	43	100	0	172	32	9	27	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49257573--49257612	21	1.9	21	84	0	53	12	2	30	55	1.50
49258089--49258222	54	2.5	54	85	3	164	41	13	24	20	1.88
49258139--49258242	53	1.9	54	84	9	142	44	17	23	15	1.86
49258089--49258285	54	3.7	53	77	11	161	39	17	24	18	1.92
49258337--49258477	61	2.4	59	89	4	212	21	12	27	39	1.89
49275448--49275549	49	2.1	50	92	1	170	41	5	20	32	1.76
49280179--49280217	19	2.1	18	85	9	51	61	2	5	30	1.31
49285182--49285220	19	2.1	19	95	0	69	28	15	0	56	1.40
49310266--49310290	11	2.3	11	100	0	50	40	0	24	36	1.55
49312883--49313150	43	6.3	43	86	0	349	26	32	17	23	1.97
49316601--49316648	20	2.3	21	79	13	55	22	2	45	29	1.64
49316616--49316654	20	2.0	20	94	0	69	20	5	48	25	1.70
49317717--49317887	89	1.9	88	85	1	234	44	26	1	26	1.64
49317914--49317957	7	6.3	7	78	0	52	27	50	0	22	1.50
49317914--49317968	21	2.6	21	88	0	74	32	43	0	23	1.54
49318312--49318348	20	1.9	18	89	10	56	59	5	8	27	1.48
49318364--49318638	41	6.7	41	88	0	406	31	23	21	23	1.98
49319265--49319330	26	2.5	26	97	0	123	36	27	19	16	1.93
49319756--49319785	10	3.0	10	95	0	51	23	10	26	40	1.86
49324234--49324271	18	2.2	17	90	4	58	34	2	0	63	1.09
49324115--49324772	120	5.5	118	89	5	907	42	1	3	51	1.30
49324476--49324630	18	9.0	17	65	22	74	42	1	1	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49324522--49324564	22	1.9	23	85	4	61	37	0	2	60	1.10
49324115--49324660	241	2.3	239	93	2	934	42	1	3	52	1.27
49324716--49324750	18	2.0	17	88	5	52	45	0	0	54	0.99
49324716--49324770	15	3.4	16	80	16	53	47	0	1	50	1.11
49324115--49324772	241	2.7	233	87	7	797	42	1	3	51	1.30
49324986--49325054	16	4.2	16	96	3	129	37	37	0	24	1.56
49324986--49325054	33	2.1	32	97	2	129	37	37	0	24	1.56
49327647--49328103	47	9.6	47	91	0	644	32	8	29	29	1.87
49327647--49328103	49	9.6	49	89	4	704	32	8	29	29	1.87
49337611--49337635	9	2.8	9	100	0	50	44	0	0	56	0.99
49344079--49344174	31	3.1	31	93	3	165	31	10	13	44	1.77
49344728--49344822	10	10.0	9	71	18	68	73	12	11	2	1.18
49344720--49344771	19	2.6	19	84	6	68	78	11	7	1	1.02
49344720--49344829	29	3.8	30	74	9	93	73	12	11	1	1.17
49344724--49344884	51	3.2	49	84	11	202	72	11	13	2	1.23
49344738--49344831	20	4.8	19	74	18	77	73	12	12	1	1.16
49344764--49344831	9	6.9	10	69	15	52	69	13	16	1	1.27
49344848--49344886	15	2.7	14	80	7	51	79	7	12	0	0.93
49351615--49351695	38	2.1	39	90	2	128	19	17	24	38	1.93
49351695--49351939	83	2.9	82	89	3	355	24	20	20	34	1.96
49351695--49351978	42	6.9	42	85	2	335	23	19	22	34	1.96
49352746--49352955	114	1.8	116	86	5	309	39	3	12	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49352879--49353114	123	1.9	123	84	5	316	41	4	10	43	1.58
49353045--49353106	31	2.0	31	81	3	72	33	4	8	53	1.52
49353250--49353278	6	4.8	6	100	0	58	48	0	51	0	1.00
49356691--49356730	20	1.9	20	85	10	53	35	20	15	30	1.93
49359401--49359453	18	2.9	18	80	2	61	41	45	1	11	1.51
49359564--49359605	9	4.7	9	87	0	57	23	11	19	45	1.83
49362060--49362164	51	2.1	49	85	3	138	28	5	15	50	1.66
49367823--49367911	45	2.0	45	82	4	108	38	24	6	30	1.81
49389018--49389210	99	1.9	99	93	0	332	26	21	24	26	1.99
49395664--49395902	87	2.7	87	81	1	273	32	10	15	41	1.80
49395993--49396215	113	2.0	113	96	0	410	31	17	18	33	1.94
49398827--49398935	53	2.1	53	94	0	191	40	9	17	33	1.81
49400835--49400860	11	2.4	11	100	0	52	26	7	38	26	1.83
49405412--49407603	737	3.0	731	89	4	3237	36	13	18	31	1.90
49412578--49412775	45	4.4	45	86	6	235	35	27	15	21	1.93
49412578--49412826	90	2.8	90	82	6	274	35	26	14	24	1.93
49412614--49412831	45	4.9	44	83	3	170	34	25	15	25	1.94
49413581--49413634	18	3.1	18	76	12	58	18	37	3	40	1.69
49414559--49414596	16	2.4	16	82	8	51	57	5	0	36	1.21
49416254--49416279	10	2.6	10	100	0	52	76	0	0	23	0.78
49416814--49416851	18	2.2	17	86	9	51	23	7	0	68	1.16
49418491--49418530	19	2.1	19	85	0	53	37	0	5	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49421030--49421072	21	2.0	22	86	4	61	27	2	11	58	1.46
49421491--49421530	13	3.2	12	89	7	53	52	7	0	40	1.30
49429672--49429913	50	4.7	50	76	14	176	23	26	21	27	1.99
49435178--49435278	49	2.1	49	90	0	157	21	16	10	50	1.76
49442737--49442961	40	5.7	40	84	5	278	24	21	28	25	1.99
49450750--49450974	40	5.7	40	83	5	251	24	22	27	25	2.00
49450757--49451007	80	3.2	79	79	8	199	26	21	26	25	1.99
49455549--49455655	37	2.9	37	74	15	89	41	2	3	52	1.34
49462568--49462878	30	10.4	30	82	0	291	18	16	21	42	1.89
49462588--49462869	120	2.3	120	95	0	510	19	17	21	41	1.90
49465032--49465256	29	7.7	30	83	3	244	39	23	16	20	1.92
49465013--49465256	59	4.2	59	80	5	273	39	23	17	19	1.92
49465055--49465256	88	2.3	88	85	4	273	41	23	16	18	1.90
49472735--49472767	15	2.3	15	89	5	50	30	9	6	54	1.56
49474287--49474412	51	2.5	51	80	2	128	24	15	24	34	1.95
49474418--49474512	45	2.1	45	92	0	163	26	18	24	30	1.98
49478834--49478874	21	2.0	21	85	0	55	36	17	12	34	1.87
49482543--49482579	17	2.2	17	90	0	56	24	8	5	62	1.44
49482749--49482796	24	2.0	24	88	8	71	45	22	2	29	1.64
49485545--49485573	14	2.1	14	100	0	58	58	27	0	13	1.36
49488480--49488523	23	1.9	22	82	17	54	36	25	0	38	1.56
49488657--49488853	51	3.9	50	77	7	218	30	26	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49488665--49488849	101	1.8	102	87	3	257	31	25	16	25	1.96
49499028--49499059	5	6.2	5	92	7	55	3	56	40	0	1.15
49499103--49499142	16	2.5	16	91	0	62	47	2	7	42	1.45
49499153--49499292	59	2.4	59	98	0	271	39	4	9	47	1.55
49499274--49499301	9	3.1	9	100	0	56	32	0	10	57	1.33
49499398--49499447	24	2.0	25	85	11	68	64	2	0	34	1.05
49499398--49499445	25	1.9	24	87	8	69	62	2	0	35	1.07
49508014--49508101	17	4.8	19	73	19	62	52	2	2	43	1.26
49508014--49508122	39	3.0	37	80	15	104	53	2	1	42	1.26
49508048--49508105	17	3.6	16	75	15	66	56	1	1	39	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213