genome.fa.s14.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  85  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23310062--23310145	33	2.6	33	88	5	118	58	0	3	38	1.16
23313221--23313281	29	2.1	29	93	0	104	22	32	11	32	1.90
23317861--23317897	17	2.1	17	90	5	56	54	5	24	16	1.63
23318983--23319038	20	2.8	20	80	0	58	53	0	28	17	1.44
23335157--23335216	28	2.1	29	84	3	77	60	8	3	28	1.42
23335107--23335325	9	23.3	10	66	20	66	60	4	2	32	1.30
23335277--23335339	28	2.3	28	83	8	76	63	0	4	31	1.15
23338975--23339018	23	1.9	22	82	17	54	36	25	0	38	1.56
23339162--23339348	51	3.7	50	80	12	238	31	26	17	25	1.97
23339160--23339344	101	1.8	101	96	3	345	31	25	17	25	1.97
23341896--23341924	4	7.2	4	100	0	58	51	0	0	48	1.00
23343844--23344137	10	30.1	10	64	16	66	31	3	6	58	1.40
23343962--23344002	19	2.2	19	86	0	55	31	2	2	63	1.20
23345224--23345266	20	2.2	20	91	8	70	2	25	0	72	0.97
23345204--23345268	26	2.4	27	75	14	64	6	24	0	69	1.11
23346264--23346315	2	26.0	2	100	0	104	0	0	50	50	1.00
23348386--23348419	13	2.4	14	85	14	52	64	5	2	26	1.30
23348390--23348419	13	2.2	14	94	5	53	63	6	3	26	1.35
23355260--23355517	139	1.9	139	90	3	421	48	13	23	15	1.80
23356715--23356770	28	2.0	29	86	10	80	58	3	16	21	1.52
23361010--23361049	21	2.0	21	85	5	55	15	20	2	62	1.43
23361207--23361244	20	1.9	20	89	10	60	23	2	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23363749--23363816	29	2.3	29	82	0	82	36	13	25	25	1.92
23363805--23363964	30	5.4	29	78	9	162	40	13	27	18	1.89
23363863--23364054	30	6.4	30	74	4	120	39	13	24	22	1.90
23363923--23364055	60	2.2	59	78	4	140	39	14	24	21	1.90
23363778--23363994	90	2.5	87	86	2	265	40	14	23	21	1.90
23371462--23371818	30	12.0	30	73	7	205	37	12	25	23	1.91
23371484--23371799	90	3.6	90	83	4	356	38	13	25	22	1.91
23371638--23371818	60	3.0	60	90	1	256	37	12	25	24	1.91
23373860--23373926	29	2.3	29	89	0	98	37	11	26	23	1.90
23373915--23374076	30	5.5	29	70	9	103	40	12	25	20	1.88
23373889--23374171	91	3.2	89	84	3	363	38	13	25	22	1.90
23381445--23381555	40	2.8	39	86	5	134	44	24	10	20	1.83
23383167--23383231	32	2.0	32	85	5	87	44	12	3	40	1.57
23385498--23385575	23	3.4	23	92	0	129	10	2	39	47	1.51
23387428--23387466	20	2.0	20	85	10	53	38	0	38	23	1.55
23398657--23398689	17	1.9	17	100	0	66	18	42	18	21	1.89
23398659--23398697	17	2.3	17	90	0	60	20	46	17	15	1.84
23401477--23401985	254	2.0	254	96	0	948	41	11	13	33	1.80
23402757--23402793	5	7.4	5	93	0	65	18	2	0	78	0.87
23420467--23420491	11	2.3	11	100	0	50	84	0	0	16	0.63
23424437--23424478	16	2.5	16	88	7	57	42	2	0	54	1.13
23424665--23424795	7	18.4	7	70	6	66	46	30	0	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23424665--23424764	44	2.3	43	81	3	112	47	30	0	23	1.52
23425102--23425301	41	4.9	41	90	1	310	28	32	20	19	1.97
23428847--23428907	3	19.3	3	74	15	52	59	3	1	36	1.24
23428864--23428893	16	1.9	15	93	6	51	63	3	0	33	1.11
23429436--23429470	11	3.3	11	88	4	54	80	0	14	5	0.89
23430716--23431031	88	3.6	88	86	1	429	24	26	20	29	1.99
23430802--23431029	44	5.2	44	64	10	133	24	25	19	30	1.98
23432300--23432341	6	6.7	6	91	2	57	14	11	0	73	1.09
23432292--23432342	12	3.8	13	92	7	77	13	13	0	72	1.12
23432282--23432342	7	9.0	7	80	20	76	14	13	0	72	1.13
23432282--23432342	22	3.0	21	84	15	76	14	13	0	72	1.13
23432844--23432910	19	3.4	19	81	18	75	0	8	5	85	0.75
23432845--23432909	10	6.6	10	81	15	82	0	9	6	84	0.77
23432845--23432909	29	2.2	30	91	8	107	0	9	6	84	0.77
23444098--23444144	23	2.0	23	83	0	58	48	14	10	25	1.76
23450035--23450132	44	2.2	45	81	5	119	28	25	12	33	1.92
23450168--23450265	44	2.2	45	79	1	108	25	26	18	29	1.98
23450284--23450689	89	4.6	88	84	2	226	29	24	16	28	1.97
23450256--23450698	44	10.0	45	77	3	396	28	25	17	29	1.97
23450378--23450698	133	2.4	133	92	1	518	27	25	17	28	1.98
23458760--23458799	20	2.0	20	90	0	62	32	12	22	32	1.91
23463761--23463828	34	2.0	34	94	0	118	48	1	19	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23469594--23469701	29	3.8	29	78	9	114	40	12	22	25	1.88
23472279--23472311	17	1.9	17	100	0	66	30	30	33	6	1.82
23472661--23472692	15	2.1	15	94	0	55	15	6	9	68	1.36
23476014--23476076	28	2.2	28	88	8	92	22	12	19	46	1.83
23476957--23477004	20	2.4	20	100	0	96	37	16	4	41	1.68
23477577--23477715	42	3.3	42	75	6	127	45	17	20	17	1.86
23480737--23480771	13	2.6	14	95	4	63	34	0	0	65	0.93
23481354--23481383	14	2.1	14	93	0	51	20	43	16	20	1.88
23482440--23482499	24	2.5	22	84	10	66	40	11	5	43	1.63
23486923--23486986	22	2.8	23	83	7	94	76	9	3	10	1.12
23486906--23486986	15	5.3	15	77	12	76	75	11	2	11	1.14
23486906--23486996	31	2.9	30	79	12	96	75	9	3	10	1.15
23487790--23487885	50	1.9	49	89	6	149	46	19	19	13	1.83
23489264--23489366	44	2.3	44	83	6	120	25	19	24	31	1.98
23489307--23489418	44	2.6	43	82	5	127	28	18	20	32	1.96
23489218--23489666	218	2.1	217	82	5	539	26	19	25	28	1.98
23489681--23489778	50	2.0	49	81	2	115	34	20	20	24	1.96
23490358--23490399	18	2.3	18	100	0	84	76	11	11	0	1.03
23491342--23491444	47	2.2	45	83	6	118	33	6	4	54	1.48
23491445--23491500	24	2.3	24	85	11	71	39	8	5	46	1.58
23505264--23505310	24	2.0	24	91	0	76	29	19	2	48	1.60
23506696--23506722	5	5.4	5	100	0	54	0	0	18	81	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23513846--23513896	18	2.8	18	75	0	66	13	43	3	39	1.63
23516709--23516748	20	2.0	20	90	0	62	50	12	10	27	1.72
23516697--23516763	34	1.9	35	90	3	109	46	13	8	31	1.74
23516732--23516771	14	2.9	14	84	0	53	42	17	7	32	1.77
23526526--23526565	20	2.0	20	100	0	80	35	15	20	30	1.93
23546040--23546075	14	2.6	14	100	0	72	16	8	16	58	1.61
23551861--23551888	3	9.3	3	100	0	56	67	0	0	32	0.91
23560773--23560815	18	2.4	18	88	7	61	46	0	0	53	1.00
23566240--23566288	16	3.1	16	84	0	71	22	32	4	40	1.73
23567814--23567924	11	10.4	11	68	15	72	24	30	1	43	1.65
23567813--23567889	22	3.5	22	79	15	95	24	29	1	44	1.62
23567813--23567887	33	2.2	33	81	9	89	24	30	1	44	1.62
23567849--23567948	51	2.0	51	86	4	139	26	28	2	44	1.65
23569758--23569800	18	2.4	18	76	0	50	18	27	6	46	1.75
23570315--23570363	14	3.6	14	71	17	50	42	34	0	22	1.54
23570343--23570469	21	6.0	21	80	1	146	45	25	1	26	1.62
23570322--23570375	27	2.0	27	88	0	81	40	35	1	22	1.65
23570343--23570469	43	3.0	42	86	2	173	45	25	1	26	1.62
23570348--23570466	64	1.9	63	87	1	175	44	25	1	28	1.64
23573636--23574203	127	4.5	125	87	3	759	30	22	16	29	1.96
23573636--23574187	251	2.2	250	87	2	768	30	22	16	30	1.96
23583321--23583362	18	2.3	18	95	0	75	7	45	26	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23587479--23587530	3	17.3	3	95	0	95	67	1	0	30	1.02
23587555--23587612	6	9.2	6	83	10	71	77	3	1	17	0.99
23591936--23591987	6	8.5	6	93	2	68	76	0	7	15	0.99
23592726--23592784	29	2.0	29	100	0	118	33	6	20	38	1.79
23593460--23593697	75	3.0	79	82	11	260	44	12	7	35	1.70
23593510--23593696	79	2.3	82	83	6	238	45	11	6	35	1.68
23593510--23593706	81	2.4	79	85	6	245	45	11	7	36	1.67
23599824--23599859	18	2.0	18	100	0	72	38	11	11	38	1.76
23601959--23602049	20	4.6	20	69	21	66	65	2	2	29	1.16
23601964--23602013	21	2.4	22	83	12	61	66	4	0	30	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213