genome.fa.s14.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  119  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34084847--34084894	22	2.1	23	84	7	62	47	2	25	25	1.62
34103173--34103217	22	2.0	22	83	8	56	40	6	0	53	1.27
34106717--34106894	27	6.6	27	83	3	187	29	27	14	28	1.95
34106738--34106893	82	1.9	81	89	3	242	29	27	15	27	1.96
34111777--34112044	40	6.7	40	96	0	473	30	20	27	22	1.98
34126193--34126266	24	3.0	24	86	2	112	36	4	37	21	1.73
34127863--34128040	46	3.8	46	79	4	205	28	28	21	21	1.99
34127871--34128042	93	1.8	93	91	0	281	27	29	21	21	1.99
34130656--34130833	27	6.6	26	82	6	178	26	15	28	29	1.96
34130657--34130812	82	1.9	81	86	3	224	26	16	28	28	1.97
34130653--34130833	82	2.2	81	82	2	220	27	16	27	29	1.97
34130738--34130844	27	3.9	27	85	1	70	26	14	28	30	1.95
34135631--34135932	40	7.6	40	89	3	387	27	27	20	24	1.99
34135631--34135932	79	3.8	79	88	3	383	27	27	20	24	1.99
34143615--34143916	40	7.6	40	87	3	369	27	27	20	24	1.99
34148819--34148994	27	6.5	27	84	3	201	30	27	14	27	1.95
34148838--34148993	82	1.9	81	88	3	233	29	28	15	26	1.96
34151436--34151465	13	2.3	13	94	0	51	20	30	0	50	1.49
34152894--34152953	27	2.2	27	93	0	102	25	3	23	48	1.66
34155330--34155392	31	2.0	31	87	6	92	49	6	19	25	1.71
34165370--34165404	16	2.1	17	89	5	54	37	17	8	37	1.80
34171638--34171780	59	2.4	58	82	5	164	21	27	13	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34171678--34171780	29	3.5	29	84	4	127	20	29	13	36	1.91
34180382--34180475	5	18.8	5	100	0	188	40	0	0	59	0.97
34181077--34181103	9	3.0	9	100	0	54	22	22	22	33	1.97
34181621--34181692	21	3.4	21	92	0	117	1	47	18	33	1.57
34186968--34187427	9	52.2	9	74	14	338	32	1	20	45	1.61
34186961--34187239	41	6.9	40	76	16	190	31	1	21	45	1.60
34187132--34187479	157	2.3	156	81	8	387	34	1	17	46	1.56
34187429--34187501	12	5.5	14	68	20	50	36	0	12	50	1.40
34187554--34187596	15	2.9	15	82	0	50	55	0	4	39	1.20
34187599--34187689	23	3.8	23	76	12	94	39	1	18	40	1.58
34187680--34187707	12	2.3	12	100	0	56	42	0	7	50	1.30
34187706--34187793	23	4.0	22	84	12	110	52	2	1	44	1.21
34187704--34187792	47	2.0	43	87	12	126	52	2	1	43	1.20
34190318--34190359	14	2.9	14	89	3	66	38	38	0	23	1.55
34190321--34190359	7	5.6	7	81	0	51	41	35	0	23	1.55
34190529--34190591	21	3.0	21	70	11	56	41	34	0	23	1.55
34190607--34190661	25	2.2	25	93	0	92	54	18	1	25	1.53
34190624--34190674	25	2.0	25	84	0	66	58	15	0	25	1.37
34195349--34195526	27	6.6	27	83	3	205	26	15	28	29	1.96
34195350--34195505	82	1.9	81	88	3	233	26	15	28	29	1.96
34195346--34195526	82	2.2	81	83	2	229	27	15	27	29	1.96
34203395--34203572	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34203396--34203551	82	1.9	81	88	3	233	26	15	28	29	1.96
34203392--34203572	82	2.2	81	83	2	229	27	15	27	29	1.96
34207011--34207056	19	2.4	19	96	0	83	34	13	0	52	1.40
34207972--34207998	13	2.1	13	100	0	54	62	14	7	14	1.51
34210542--34210709	89	1.9	89	96	0	309	27	23	12	36	1.91
34213796--34213869	22	3.3	22	67	25	64	29	5	8	56	1.51
34213788--34213878	46	2.0	46	95	2	166	31	6	6	54	1.52
34213793--34213873	25	3.4	25	65	14	73	30	4	7	56	1.48
34217920--34217974	23	2.4	23	93	0	92	25	27	25	21	2.00
34217963--34218146	89	2.1	89	92	0	305	27	28	22	21	1.99
34218354--34218412	23	2.6	23	88	0	91	38	23	3	33	1.72
34221139--34221369	43	5.5	41	77	10	191	35	25	14	23	1.93
34221139--34221369	85	2.7	85	87	0	311	35	25	14	23	1.93
34221346--34221395	26	1.9	26	91	0	82	24	32	22	22	1.98
34221480--34221539	30	2.0	31	93	3	104	38	18	1	41	1.60
34223875--34223921	13	3.6	13	77	11	60	53	2	2	42	1.25
34224584--34224634	24	2.1	25	85	3	68	27	37	0	35	1.57
34227973--34228006	17	1.9	18	88	5	52	73	11	2	11	1.20
34235613--34235809	29	6.8	29	81	2	234	22	28	10	38	1.87
34235602--34235808	58	3.6	58	84	2	299	22	28	11	38	1.88
34235603--34235803	87	2.3	87	86	0	276	22	28	10	37	1.88
34243352--34243418	25	2.7	25	85	0	80	23	25	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34266368--34266464	25	3.9	25	71	15	85	34	19	22	23	1.97
34268594--34268626	11	2.8	12	90	9	50	18	0	3	78	0.87
34272514--34272546	14	2.4	14	100	0	66	21	21	21	36	1.95
34278241--34278423	91	2.0	91	96	2	341	31	6	20	41	1.77
34278868--34278929	32	1.9	32	93	6	108	19	3	16	61	1.48
34283378--34283640	54	4.9	54	81	2	296	41	19	16	22	1.90
34283378--34283652	81	3.4	80	85	6	349	41	18	16	23	1.89
34283378--34283610	27	8.7	26	81	7	225	42	19	16	22	1.89
34283378--34283652	27	10.2	27	79	7	195	41	18	16	23	1.89
34283853--34283927	26	2.9	26	83	0	96	14	21	22	41	1.89
34292368--34292395	7	4.0	7	100	0	56	28	0	0	71	0.86
34294314--34294521	28	7.5	28	95	2	350	31	28	13	25	1.94
34294314--34294546	55	4.2	55	92	1	358	31	29	13	25	1.94
34294314--34294521	111	1.9	110	93	1	362	31	28	13	25	1.94
34296310--34296357	8	6.1	8	77	22	57	37	2	0	60	1.09
34304146--34304218	16	4.1	16	73	21	56	27	13	12	46	1.79
34304167--34304215	23	2.1	23	92	0	80	28	14	12	44	1.81
34307254--34307331	32	2.5	32	87	6	106	20	19	32	28	1.97
34308884--34308925	20	2.0	21	82	13	52	28	11	9	50	1.70
34310658--34310802	50	2.9	49	81	9	152	25	23	20	31	1.98
34316071--34316116	19	2.4	19	89	7	67	45	0	4	50	1.21
34319415--34319599	79	2.3	82	84	7	229	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34319396--34319599	40	5.1	40	81	8	229	24	27	22	25	2.00
34320727--34320902	56	3.1	56	98	0	334	23	22	9	45	1.80
34325102--34325251	51	2.9	51	94	0	273	40	4	26	28	1.74
34330820--34330868	25	2.0	25	88	11	75	48	2	2	46	1.25
34331557--34331584	3	9.3	3	100	0	56	32	0	0	67	0.91
34335884--34335912	15	1.9	15	100	0	58	75	0	0	24	0.80
34335908--34336027	30	4.1	29	78	11	129	32	21	3	42	1.69
34336282--34336313	14	2.3	15	84	15	50	59	0	40	0	0.97
34336257--34336309	25	2.0	28	85	10	76	66	0	33	0	0.92
34336407--34336459	14	3.8	14	80	5	63	81	0	18	0	0.70
34336543--34336590	14	3.6	12	83	13	51	77	10	12	0	1.00
34336560--34336600	13	3.2	13	89	3	57	73	7	19	0	1.07
34337193--34337240	17	2.8	17	76	23	55	31	16	10	41	1.82
34337303--34337367	17	3.8	18	74	8	55	36	13	12	36	1.83
34337355--34337409	28	2.0	28	96	0	101	29	9	14	47	1.75
34337394--34337445	17	3.0	18	88	5	72	30	13	7	48	1.71
34337505--34337638	17	7.6	17	78	9	78	29	13	11	45	1.78
34337563--34337639	19	4.2	18	82	12	77	35	14	9	41	1.77
34337572--34337657	36	2.3	38	83	13	108	32	11	10	45	1.75
34337443--34337640	18	10.9	18	74	13	88	32	12	10	44	1.75
34338204--34338271	34	2.0	35	85	2	93	33	8	14	42	1.77
34340345--34340454	44	2.6	43	90	7	172	50	2	24	21	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34340345--34340472	44	3.0	42	83	13	165	47	3	25	23	1.66
34362841--34362887	17	2.8	17	76	0	58	4	29	2	63	1.25
34362842--34362885	23	1.9	23	86	9	63	4	27	2	65	1.23
34376548--34376606	22	2.6	22	82	15	68	55	0	8	35	1.30
34379246--34379284	20	2.0	20	90	10	62	15	23	5	56	1.59
34379487--34379680	49	3.9	50	79	3	178	23	28	20	27	1.99
34381701--34381735	13	2.9	12	88	12	54	42	17	14	25	1.86
34381813--34381865	25	2.1	26	89	3	81	24	9	18	47	1.78
34381820--34382040	112	2.0	108	87	3	316	17	14	17	50	1.78
34384167--34384222	27	2.1	27	93	0	94	33	25	23	17	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213