genome.fa.s14.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  170  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51080865--51080909	6	7.5	6	100	0	90	0	15	84	0	0.62
51084592--51084657	24	2.7	25	73	13	66	30	21	10	37	1.87
51094324--51094373	23	2.1	23	82	10	57	70	0	6	24	1.10
51098920--51098972	26	2.0	26	100	0	106	30	15	15	39	1.87
51099285--51099391	21	5.1	21	87	2	128	45	17	23	13	1.83
51099266--51099391	42	3.0	42	80	8	143	46	17	23	12	1.83
51100945--51100980	15	2.5	15	86	4	56	27	19	11	41	1.85
51119615--51119654	16	2.5	16	95	0	71	35	5	32	27	1.79
51119887--51120039	18	8.9	18	64	20	67	55	2	0	41	1.18
51119976--51120016	13	3.2	12	80	12	55	58	0	0	41	0.98
51119873--51121641	119	15.0	122	75	16	909	53	4	1	41	1.28
51120090--51120137	12	3.7	12	75	20	51	56	0	0	43	0.99
51120097--51120161	18	4.2	16	72	18	57	60	0	1	38	1.07
51120124--51120161	18	2.2	17	90	4	58	63	0	2	34	1.09
51120244--51120279	18	2.1	17	90	10	56	66	0	0	33	0.92
51120368--51120440	18	3.9	18	72	12	67	49	1	2	46	1.24
51120456--51120517	14	4.3	15	75	17	51	58	1	0	40	1.08
51120386--51120929	102	5.2	102	78	11	496	53	4	1	41	1.28
51119867--51120503	122	5.3	120	87	5	937	53	3	1	41	1.25
51120569--51120619	12	3.4	15	76	23	54	50	1	0	47	1.12
51120560--51120701	28	5.1	28	74	17	127	55	2	0	42	1.11
51120530--51120716	83	2.3	82	90	5	288	54	3	0	41	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51120776--51120834	16	3.6	16	80	13	57	55	0	1	42	1.09
51120613--51121171	122	4.6	119	92	2	881	54	4	1	40	1.27
51120883--51120947	18	4.2	16	72	18	57	60	0	1	38	1.07
51120910--51120947	18	2.2	17	90	4	58	63	0	2	34	1.09
51121005--51121070	15	4.4	14	73	19	53	62	0	0	37	0.96
51121017--51121069	16	3.2	16	86	10	63	64	0	0	35	0.94
51120185--51123045	427	6.4	422	75	18	1902	52	4	1	41	1.30
51121032--51121069	18	2.2	18	95	4	69	65	0	0	34	0.93
51121091--51121647	38	14.4	38	64	22	155	52	4	1	40	1.31
51121054--51121253	102	2.0	102	95	0	364	51	4	1	43	1.28
51121198--51121410	55	4.0	55	73	14	230	53	5	0	40	1.30
51121062--51121290	102	2.2	102	87	3	300	51	4	1	41	1.31
51121517--51121561	16	2.8	16	80	16	56	60	0	2	37	1.09
51121532--51121569	18	2.2	17	90	4	58	63	0	2	34	1.09
51121531--51121735	95	2.2	94	95	2	374	53	4	1	40	1.30
51121612--51121664	17	3.1	17	76	17	56	62	1	0	35	1.06
51121532--51121787	95	2.7	94	87	6	288	53	3	1	41	1.25
51121837--51121894	16	3.8	16	70	27	54	56	3	1	37	1.26
51121686--51123045	38	34.3	39	66	19	529	52	4	1	41	1.31
51122093--51122138	17	2.8	17	84	12	53	52	0	0	47	1.00
51122112--51122145	17	2.0	17	94	0	59	55	0	0	44	0.99
51122322--51122386	18	4.2	16	72	18	57	60	0	1	38	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51122349--51122386	18	2.2	17	90	4	58	63	0	2	34	1.09
51122560--51122625	15	4.4	14	71	19	53	60	0	1	37	1.06
51122572--51122616	16	2.8	16	80	16	56	60	0	2	37	1.09
51122587--51122624	18	2.2	17	90	4	58	63	0	2	34	1.09
51122690--51122721	16	2.1	15	94	5	55	53	0	0	46	1.00
51122690--51122728	14	2.8	14	84	11	53	56	0	0	43	0.99
51122696--51122742	16	3.0	16	79	14	53	55	0	0	44	0.99
51122680--51122748	26	2.5	28	79	9	70	56	1	0	42	1.08
51122943--51122976	17	2.0	17	100	0	68	58	0	0	41	0.98
51121630--51123045	119	11.9	120	91	3	2283	52	4	1	41	1.31
51124432--51124535	49	2.1	49	94	0	181	50	10	7	31	1.65
51128120--51128161	22	1.9	22	100	0	84	54	7	28	9	1.59
51133784--51133822	17	2.2	17	86	4	51	41	2	5	51	1.38
51138211--51138250	21	2.0	19	85	9	53	47	10	10	32	1.70
51141158--51141209	25	2.0	26	85	3	70	25	3	21	50	1.65
51142524--51142555	16	2.0	16	100	0	64	56	6	12	25	1.59
51142867--51142901	12	2.8	12	91	4	52	31	42	2	22	1.68
51143557--51143650	47	2.0	47	89	0	143	29	14	22	32	1.94
51145224--51145274	21	2.4	21	90	0	75	35	17	43	3	1.68
51145174--51145341	87	1.9	87	89	4	259	38	16	31	13	1.87
51145686--51145990	43	7.1	42	88	3	405	22	21	26	30	1.99
51145699--51145990	128	2.3	128	89	2	426	22	21	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51145686--51145990	85	3.6	84	88	3	430	22	21	26	30	1.99
51145699--51146038	85	4.0	87	84	4	354	24	21	25	29	1.99
51146092--51146134	21	2.0	21	86	8	61	44	30	13	11	1.80
51147177--51147234	21	2.8	21	84	7	66	56	3	1	37	1.26
51147204--51147279	9	8.0	9	76	12	55	56	2	2	38	1.27
51147199--51147280	29	2.8	29	79	5	85	57	2	2	37	1.25
51147785--51147859	27	2.8	26	76	15	80	32	0	4	64	1.12
51147793--51147832	19	2.1	19	90	0	62	32	0	2	65	1.06
51147821--51147878	19	3.1	19	80	14	75	32	0	5	62	1.18
51148225--51148262	20	2.0	21	85	15	55	28	7	2	60	1.38
51152409--51152438	15	2.0	15	93	0	51	53	30	13	3	1.56
51156470--51156571	24	4.2	24	71	8	82	20	25	19	34	1.96
51156563--51156635	25	3.0	23	75	13	65	26	27	19	27	1.99
51159611--51159872	131	2.0	131	96	0	479	28	7	28	35	1.84
51168887--51168921	17	2.1	17	100	0	70	17	25	22	34	1.96
51181122--51181177	19	2.8	20	78	10	69	3	23	7	66	1.33
51189706--51189756	15	3.5	14	70	19	50	27	23	5	43	1.77
51189725--51189772	15	3.2	15	71	11	53	25	20	6	47	1.73
51189703--51189772	30	2.3	30	97	2	131	27	24	5	42	1.77
51190714--51190772	30	2.0	30	86	0	82	23	20	15	40	1.90
51209895--51209950	29	1.9	29	92	0	94	17	10	25	46	1.80
51227640--51227680	18	2.2	19	86	4	57	60	4	7	26	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51230124--51230154	16	1.9	16	93	0	53	0	16	0	83	0.64
51243076--51243147	36	2.0	35	81	2	81	33	25	11	30	1.90
51249080--51249118	20	2.1	19	85	9	53	33	30	20	15	1.94
51256406--51256435	15	2.0	15	100	0	60	60	13	0	26	1.34
51263494--51263535	20	2.2	19	83	12	50	61	2	19	16	1.44
51265007--51265046	21	1.9	22	85	10	57	30	17	2	50	1.59
51265994--51266129	27	5.0	27	80	3	114	34	15	21	28	1.94
51265994--51266129	54	2.5	54	80	2	139	34	15	21	28	1.94
51266253--51266281	9	3.3	9	95	4	51	20	0	24	55	1.44
51271770--51271798	14	2.0	15	93	6	51	6	10	0	82	0.83
51279095--51279135	20	2.0	22	85	9	59	70	4	9	14	1.30
51279301--51279358	22	2.6	22	81	7	64	41	15	5	37	1.70
51281907--51281937	16	1.9	16	100	0	62	35	6	6	51	1.53
51292580--51293092	44	11.7	43	83	3	571	26	25	17	30	1.97
51292580--51293092	132	3.9	132	84	1	670	26	25	17	30	1.97
51292580--51293094	88	5.9	88	88	0	683	26	25	17	31	1.97
51316572--51317108	267	2.0	266	96	0	984	30	17	13	39	1.87
51318312--51318376	32	2.0	32	100	0	130	29	33	12	24	1.92
51329345--51329388	10	4.6	10	83	5	56	34	0	43	22	1.54
51330000--51330074	32	2.3	32	95	0	132	21	1	20	57	1.48
51332116--51332159	20	2.3	18	84	7	52	18	22	0	59	1.38
51333561--51333654	48	2.0	48	100	0	188	43	14	12	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51336245--51336282	19	2.1	19	90	9	62	50	0	7	42	1.31
51340379--51340410	14	2.3	14	100	0	64	46	0	0	53	1.00
51344559--51344610	16	3.2	16	100	0	104	30	30	11	26	1.92
51346486--51346913	142	3.0	142	89	2	637	34	17	20	28	1.95
51346958--51348246	100	12.9	100	84	4	1454	32	22	20	23	1.98
51346988--51348246	50	25.2	50	70	3	632	32	22	20	23	1.98
51349776--51349806	16	1.9	16	93	0	53	41	9	0	48	1.36
51354604--51354651	20	2.4	20	92	0	78	75	8	4	12	1.18
51356982--51357135	44	3.5	43	74	12	111	31	18	20	29	1.96
51357010--51357714	142	5.0	142	92	0	1126	33	18	20	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213