genome.fa.s14.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  114  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32687687--32687749	21	3.2	20	74	24	55	42	19	1	36	1.61
32688836--32688860	10	2.5	10	100	0	50	28	8	0	64	1.22
32689163--32689206	23	1.9	22	82	17	54	36	25	0	38	1.56
32689251--32689339	45	2.0	45	93	0	151	33	23	17	24	1.96
32689350--32689536	51	3.7	49	80	7	223	31	28	16	24	1.96
32689346--32689532	101	1.8	101	90	5	306	32	28	16	23	1.96
32701528--32701588	29	2.1	29	87	6	88	24	13	16	45	1.83
32711208--32711462	124	2.1	124	88	3	379	30	15	22	31	1.95
32714733--32715693	28	35.6	28	77	15	693	31	1	23	43	1.62
32714816--32715409	23	22.4	23	74	18	263	32	1	22	44	1.60
32715239--32715312	35	2.1	35	89	0	112	24	2	33	39	1.70
32715441--32715676	23	9.4	23	76	19	215	31	0	22	44	1.59
32715378--32715473	29	2.9	35	71	17	105	26	2	30	41	1.67
32714832--32715676	51	15.8	51	77	14	646	31	0	23	44	1.60
32717839--32717872	15	2.3	15	90	5	52	67	5	0	26	1.13
32718069--32718110	22	1.9	22	90	0	66	33	0	33	33	1.58
32718082--32718140	30	2.0	30	96	0	109	32	0	35	32	1.58
32718060--32718162	52	2.0	51	84	5	136	33	0	32	33	1.65
32718111--32718181	22	3.2	22	90	7	108	36	1	28	33	1.66
32724377--32724439	23	2.6	25	85	10	94	0	33	19	47	1.49
32724499--32724583	41	2.1	41	97	0	161	8	30	14	47	1.73
32727121--32727160	13	3.1	13	96	0	71	40	25	7	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32733872--32734215	102	3.4	101	84	2	415	28	15	25	30	1.96
32733872--32734205	51	6.6	50	77	7	307	29	15	25	30	1.96
32737870--32737956	43	2.0	43	88	0	129	25	21	3	49	1.65
32740018--32740051	18	1.9	17	88	5	50	58	20	0	20	1.39
32740269--32740377	55	2.0	55	85	0	146	20	28	26	24	1.99
32740273--32740394	55	2.2	55	83	0	145	19	28	26	25	1.99
32742628--32742653	9	2.9	9	100	0	52	11	30	11	46	1.76
32744859--32745129	40	6.8	40	90	1	418	23	29	21	25	1.99
32744859--32745129	80	3.4	80	95	0	470	23	29	21	25	1.99
32751766--32751812	21	2.2	21	96	0	85	44	21	8	25	1.80
32751766--32751821	21	2.7	21	88	5	69	37	25	8	28	1.86
32761391--32761446	21	2.7	21	85	0	76	26	7	37	28	1.83
32761614--32761732	35	3.5	34	76	14	97	52	4	1	42	1.31
32761750--32761783	17	1.9	18	88	5	52	50	2	2	44	1.32
32766698--32766745	22	2.2	22	88	3	71	66	4	12	16	1.39
32769448--32769520	26	2.8	26	80	12	80	54	1	10	32	1.44
32769455--32769507	24	2.2	24	86	6	72	54	0	11	33	1.36
32771290--32771752	50	9.3	50	69	0	305	25	24	20	30	1.99
32771306--32771803	100	5.0	100	93	0	825	24	23	21	30	1.99
32779824--32779863	20	2.0	20	95	0	71	30	12	25	32	1.92
32783714--32783762	25	2.0	24	88	4	71	57	4	8	30	1.47
32783764--32783830	25	2.6	25	83	6	82	55	0	10	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32787744--32787857	40	2.9	39	83	6	133	34	21	22	21	1.97
32787902--32788141	41	5.9	41	91	1	365	24	20	24	30	1.98
32788526--32788578	14	3.8	14	82	0	52	26	0	39	33	1.57
32788554--32788583	14	2.1	14	93	0	51	36	0	30	33	1.58
32788757--32788808	21	2.4	22	80	6	70	21	0	40	38	1.53
32789668--32789703	7	5.1	7	89	0	54	22	0	44	33	1.53
32789670--32789778	7	15.4	7	72	9	51	22	0	33	44	1.53
32789685--32789799	50	2.3	50	84	3	160	22	0	33	43	1.54
32790625--32790668	21	2.0	21	86	8	61	45	38	0	15	1.47
32791542--32791852	43	7.3	43	85	5	398	25	18	30	24	1.98
32791548--32791852	128	2.4	129	85	6	404	25	19	30	24	1.98
32792113--32792152	19	2.1	19	86	9	55	60	12	5	22	1.52
32806862--32806898	17	2.2	17	100	0	74	45	0	16	37	1.47
32808267--32808464	88	2.2	88	83	3	238	31	25	25	17	1.97
32810370--32810421	21	2.5	21	96	0	95	36	25	19	19	1.95
32811351--32811405	26	2.1	26	86	6	76	30	0	9	60	1.28
32813131--32813197	29	2.5	27	84	13	93	47	4	0	47	1.22
32813355--32813411	18	3.1	18	82	12	62	61	0	38	0	0.96
32813386--32813495	10	10.5	10	72	13	53	70	0	29	0	0.94
32813401--32813462	16	3.9	16	71	25	51	69	0	29	1	0.98
32813384--32813496	18	6.1	18	69	15	70	69	0	30	0	0.95
32813441--32813523	28	2.8	30	80	8	82	71	0	28	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32813400--32813523	36	3.4	35	75	11	106	70	0	29	0	0.93
32814257--32814312	27	2.1	27	93	0	94	44	14	32	8	1.76
32819311--32819345	18	1.9	18	94	0	61	14	42	5	37	1.69
32820133--32820161	3	9.7	3	100	0	58	68	31	0	0	0.89
32820214--32820262	23	2.1	23	85	14	66	73	8	0	18	1.07
32820287--32820317	13	2.5	13	94	5	55	0	25	0	74	0.82
32820509--32820579	30	2.5	29	84	13	94	46	0	9	43	1.37
32820509--32820579	27	2.6	27	88	8	99	46	0	9	43	1.37
32824833--32824858	9	2.9	9	100	0	52	46	11	11	30	1.76
32824937--32825008	20	3.7	19	81	7	74	55	5	0	38	1.23
32824938--32825014	19	4.1	19	80	14	79	53	5	0	41	1.23
32829262--32829420	25	6.4	24	82	11	103	32	20	23	23	1.98
32829262--32829421	50	3.2	49	82	4	153	31	20	24	23	1.98
32829305--32829421	50	2.3	50	88	0	162	34	19	25	20	1.96
32839036--32839060	13	1.9	13	100	0	50	52	0	0	48	1.00
32844652--32844727	28	2.7	28	85	0	107	36	5	9	48	1.58
32849845--32849875	15	2.1	15	94	5	55	32	9	6	51	1.60
32853069--32853417	27	12.9	27	88	1	466	38	18	16	25	1.92
32868109--32868185	39	2.0	39	100	0	154	32	12	20	33	1.91
32869555--32869745	50	3.7	50	85	4	220	26	21	28	23	1.99
32869617--32869796	50	3.6	49	82	3	175	28	21	28	22	1.99
32869998--32870046	20	2.5	20	81	15	66	57	6	24	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32874698--32874731	11	3.2	10	88	12	50	67	2	2	26	1.19
32878904--32878950	24	2.0	24	100	0	94	25	17	12	44	1.84
32885326--32885365	6	7.0	6	86	8	57	65	2	0	32	1.06
32885326--32885365	11	3.5	11	86	6	62	65	2	0	32	1.06
32885326--32885411	17	4.8	17	72	13	66	68	4	3	23	1.24
32892016--32892120	36	2.9	36	82	1	140	23	24	14	37	1.92
32893510--32893540	16	1.9	16	100	0	62	32	29	0	38	1.57
32898271--32898301	14	2.2	14	100	0	62	41	29	0	29	1.56
32899978--32900140	80	2.0	80	100	0	326	27	11	17	44	1.82
32903441--32903569	63	2.0	63	86	2	179	26	31	17	25	1.97
32904785--32904820	16	2.2	17	90	5	56	47	0	36	16	1.47
32904989--32905031	22	2.0	22	86	9	61	6	30	0	62	1.21
32907346--32907394	24	2.0	24	84	7	64	22	8	0	69	1.14
32908621--32908681	31	1.9	32	83	6	79	36	11	13	39	1.80
32909084--32909121	18	2.1	18	90	0	58	44	0	5	50	1.24
32914514--32914871	40	8.9	40	88	1	270	34	18	31	16	1.93
32914565--32914871	80	3.8	80	90	0	425	34	17	30	16	1.93
32914565--32914871	120	2.6	120	89	0	461	34	17	30	16	1.93
32919539--32919619	38	2.2	37	80	14	87	66	3	2	27	1.21
32919863--32919910	25	2.0	24	87	4	69	35	12	8	43	1.73
32920401--32920446	24	1.9	24	86	0	65	15	4	30	50	1.63
32924475--32924635	34	4.7	34	80	9	168	32	11	14	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32924746--32924870	44	2.8	44	79	4	135	22	15	21	40	1.90
32932030--32932265	116	2.0	117	92	0	393	40	27	5	25	1.78
32935279--32935384	29	3.6	29	77	6	90	33	9	22	33	1.86
32961970--32962012	15	2.7	16	78	10	52	62	6	0	30	1.21
32970236--32970271	18	2.1	17	89	5	54	75	8	2	13	1.15
32977621--32977655	18	1.9	18	94	0	61	28	5	42	22	1.76
32979402--32979459	22	2.7	22	86	7	75	22	0	37	39	1.54
32979415--32979486	29	2.5	29	80	14	87	22	0	37	40	1.54
32979452--32979544	21	4.4	21	66	15	66	18	0	43	38	1.50
32979238--32979544	14	21.9	14	66	10	92	21	0	37	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213